Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr2

Orthogroup ID

OG0006436

Physical Location & Seq

Genomic Coordinates Reverse (-)

13918422 .. 13919805

Gene Structure 1384 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom02g16670.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1299 bp

ATGGGTAAAGGAAAGTTTCATCAAGGGTATAGGTATCCTGCACCAAGACAACAGTTCTTTAATCAGAATCATGTCCCTACCTCAGGTGTTCTTGGTCCATCTCCAACTGTGCCTTTTGCTCATTCTGTTTTGTGTCAGTTGTGTAATGCATATGGTCATACTGCACCATTTTGCCATTCCAAGACAGTGGATAAATCTGGTTGCCAGATTTGTGGGAAGCACAACCACACGACTTGGTTTTGCTTTTACAATGATAAGGGTCATTCATACATTGGTTCACAGCAACCATCCATGGCTCATTATTCCTATGCTCCGTCAGCACCTCAGTTCTCATCTCAGCCTGCAATGCAAGCCATGCATACTATGGTTCCATCATCTTCTCAAGCATCTTCATCTCAACCTTCTACTCATCTTTGGCTTGCTGATTCTGGGGCCACGAATCACATGACCACTGATCTCAGTAACTTGACTTTAGCCTCTCCATATCCAACAAATGAGACAGTTCAAACTGCTAATGGAGAAGGTTTGAGAGTATCCCATGTTGGCAGTACTGTTATTCATACACCAGTACATCCTATCCAATTAAATTCTGTTTTATATGTGCCCAAGTTGTCTCAAAATCTATTATCCGTACATAGACTTTGTCTTGATAACAACTGCTGGTTGATTTTTGATGCATTCTGTTTTTGGATTCAGGACAAGGCCACAGAGAGGATGCTTTACAAAGGGCTGTGCAGTAATGGACTTTACCCCATCCCATCCCTTGCCAAACATCCTGCTTCTTATTCACCAAGTAATATCAAGGCCTCTGCATATCTGGGACAACTTATCAGTTCATCTCTTTGGCATAGTAGGTTAGGTCATCCTACTAATAACATTGTTTCTACTATGCTAAGTAAAGCTAATATTAGGTGTTCCAAGGATGATGTACCAATAGTCTGTCATAGTTGCCTAGCAGGGAAATTTACTAAACTGCCTTTTCAATCTAGTACTCATCAATCTCAAATACCTTTTGAAGTTGTTCACAGTGACCTTTGGGGTCCTGCCCCTTGTAATTCAATTGATGGTTTCAAATTCTATGTAACTATCATTGATGAATGTACTATATTCTGTTGGGTGTTCCCACTTATAAATAAATCTGATTTTTTTGATACTTTTGTCTCCTTTTATGCATTTGTTCAAGCTCAGTTTTCTGCAACCATCAAGATTTTACAATCCGATGGTGGGGGAGAGTATATAAATCATAAACTACAAGCTTTTCTCAAAGTCAAAGGGGTGCTTAGCCGAAAGAAAACATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005768 GO:0005770 GO:0006605 GO:0006623 GO:0006810 GO:0006811 GO:0006812 GO:0006885 GO:0006886 GO:0007034 GO:0008104 GO:0008150 GO:0012505 GO:0015031 GO:0015672 GO:0015833 GO:0031410 GO:0031982 GO:0033036 GO:0033365 GO:0034613 GO:0042592 GO:0042886 GO:0043226 GO:0043227 GO:0043229 GO:0044424 GO:0044444 GO:0044464 GO:0045184 GO:0046907 GO:0048878 GO:0050801 GO:0051179 GO:0051234 GO:0051641 GO:0051649 GO:0055067 GO:0055080 GO:0065007 GO:0065008 GO:0070727 GO:0071702 GO:0071705 GO:0072594 GO:0072665 GO:0072666 GO:0097708 GO:0098771

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Na_H_Exchanger

Protein Analysis

433

Amino Acids

47.8

Weight (kDa)

8.84

Isoelectric Point (pI)

51.44

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Pol_BBD	PF22936	139 - 214	6.7e-16	Pol polyprotein, beta-barrel domain
gag_pre-integrs	PF13976	277 - 321	5.3e-10	GAG-pre-integrase domain
rve	PF00665	336 - 426	2.3e-06	Integrase core domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006436)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G21280
fragaria_vesca	FvH4_3g37931 FvH4_3g37931 FvH4_3g37931
malus_domestica	MD01G1094300.v1.1 MD02G1156200.v1.1 MD10G1309400.v1.1 MD14G1005300.v1.1
pyrus_communis	pycom02g16670 pycom03g10030 pycom04g21390 pycom05g29420 pycom07g08570 pycom08g06430 pycom15g03080 pycom15g21690
rosa_chinensis	RchiOBHm_Chr4g0394011 RchiOBHm_Chr4g0436631
rosa_multiflora	Rmu_sc0002646.1_g000018 Rmu_sc0004135.1_g000007
rosa_roxburghii	Rroxscaffold_2G00099130
rosa_samantha	Rh1AG086000 Rh2BG003200 Rh5DG450100 Rh7AG095400
rosa_wichuraiana	Rw1G012660

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	1130
AcsI	RAATTY	3 cut(s)	586, 962, 1073
AfaI	GTAC	6 cut(s)	550, 570, 633, 930, 991, 1102
AfiI	CCNNNNNNNGG	3 cut(s)	83, 711, 1224
AgsI	TTSAA	6 cut(s)	506, 983, 1016, 1059, 1072, 1181
AluBI	AGCT	3 cut(s)	902, 1184, 1256
AluI	AGCT	3 cut(s)	902, 1184, 1256
Alw26I	GTCTC	3 cut(s)	491, 618, 1165
AoxI	GGCC	3 cut(s)	432, 702, 804
ApoI	RAATTY	3 cut(s)	586, 962, 1073
Asp700I	GAANNNNTTC	1 cut(s)	1020
AspS9I	GGNCC	3 cut(s)	95, 432, 1040
AsuHPI	GGTGA	1 cut(s)	780
AvaII	GGWCC	2 cut(s)	95, 1040
AxyI	CCTNAGG	1 cut(s)	82
BaeGI	GKGCMC	1 cut(s)	606
BaeI	ACNNNNGTAYC	2 cut(s)	1143, 1176
BccI	CCATC	8 cut(s)	106, 295, 379, 761, 766, 1058, 1208, 1214
BciVI	GTATCC	2 cut(s)	45, 544
BcoDI	GTCTC	3 cut(s)	491, 618, 1165
BfaI	CTAG	2 cut(s)	953, 987
BfuI	GTATCC	2 cut(s)	45, 544
BlpI	GCTNAGC	1 cut(s)	1280
BmcAI	AGTACT	2 cut(s)	550, 991
Bme18I	GGWCC	2 cut(s)	95, 1040
BmgT120I	GGNCC	3 cut(s)	95, 432, 1040
BmiI	GGNNCC	3 cut(s)	369, 433, 1041
BmsI	GCATC	3 cut(s)	395, 664, 705
Bpu1102I	GCTNAGC	1 cut(s)	1280
BpuEI	CTTGAG	1 cut(s)	366
BsaJI	CCNNGG	2 cut(s)	291, 918
Bsc4I	CCNNNNNNNGG	3 cut(s)	83, 711, 1224
Bse1I	ACTGG	1 cut(s)	566
Bse21I	CCTNAGG	1 cut(s)	82
Bse3DI	GCAATG	1 cut(s)	351
BseDI	CCNNGG	2 cut(s)	291, 918
BseGI	GGATG	8 cut(s)	287, 571, 720, 753, 758, 772, 862, 928
BseLI	CCNNNNNNNGG	3 cut(s)	83, 711, 1224
BseMI	GCAATG	1 cut(s)	351
BseMII	CTCAG	5 cut(s)	96, 338, 350, 472, 1199
BseNI	ACTGG	1 cut(s)	566
BseSI	GKGCMC	1 cut(s)	606
BsgI	GTGCAG	3 cut(s)	24, 147, 754
BshFI	GGCC	3 cut(s)	434, 704, 806
BslFI	GGGAC	2 cut(s)	59, 834
BslI	CCNNNNNNNGG	3 cut(s)	83, 711, 1224
BsmAI	GTCTC	3 cut(s)	491, 618, 1165
BsmFI	GGGAC	2 cut(s)	59, 834
BsmI	GAATGC	1 cut(s)	677
BsnI	GGCC	3 cut(s)	434, 704, 806
Bsp1286I	GDGCHC	1 cut(s)	606
Bsp143I	GATC	1 cut(s)	454
Bsp1720I	GCTNAGC	1 cut(s)	1280
Bsp19I	CCATGG	1 cut(s)	291
BspANI	GGCC	3 cut(s)	434, 704, 806
BspCNI	CTCAG	5 cut(s)	95, 337, 349, 471, 1198
BspLI	GGNNCC	3 cut(s)	369, 433, 1041
BsrDI	GCAATG	1 cut(s)	351
BsrI	ACTGG	1 cut(s)	566
BssECI	CCNNGG	2 cut(s)	291, 918
BssMI	GATC	1 cut(s)	454
BssT1I	CCWWGG	2 cut(s)	291, 918
Bst4CI	ACNGT	6 cut(s)	54, 109, 187, 502, 553, 1028
BstAPI	GCANNNNNTGC	1 cut(s)	355
BstC8I	GCNNGC	3 cut(s)	342, 351, 420
BstDEI	CTNAG	7 cut(s)	82, 324, 336, 458, 893, 1185, 1280
BstDSI	CCRYGG	1 cut(s)	291
BstENI	CCTNNNNNAGG	1 cut(s)	81
BstF5I	GGATG	8 cut(s)	287, 571, 720, 753, 758, 772, 862, 928
BstKTI	GATC	1 cut(s)	457
BstMAI	GTCTC	3 cut(s)	491, 618, 1165
BstMBI	GATC	1 cut(s)	454
BstMWI	GCNNNNNNNGC	4 cut(s)	317, 346, 350, 355
BstSLI	GKGCMC	1 cut(s)	606
BstXI	CCANNNNNNTGG	2 cut(s)	187, 212
Bsu36I	CCTNAGG	1 cut(s)	82
BsuI	GTATCC	2 cut(s)	45, 544
BsuRI	GGCC	3 cut(s)	434, 704, 806
BtgI	CCRYGG	1 cut(s)	291
BtsCI	GGATG	8 cut(s)	287, 571, 720, 753, 758, 772, 862, 928
BtsIMutI	CAGTG	3 cut(s)	192, 450, 1033
Cac8I	GCNNGC	3 cut(s)	342, 351, 420
Cfr13I	GGNCC	3 cut(s)	95, 432, 1040
Csp6I	GTAC	6 cut(s)	549, 569, 632, 929, 990, 1101
CspCI	CAANNNNNGTGG	2 cut(s)	215, 250
CviAII	CATG	5 cut(s)	71, 292, 355, 445, 539
CviQI	GTAC	6 cut(s)	549, 569, 632, 929, 990, 1101
DdeI	CTNAG	7 cut(s)	82, 324, 336, 458, 893, 1185, 1280
DpnI	GATC	1 cut(s)	456
DpnII	GATC	1 cut(s)	454
Eco130I	CCWWGG	2 cut(s)	291, 918
Eco147I	AGGCCT	1 cut(s)	806
Eco47I	GGWCC	2 cut(s)	95, 1040
Eco81I	CCTNAGG	1 cut(s)	82
EcoNI	CCTNNNNNAGG	1 cut(s)	81
EcoO109I	RGGNCCY	1 cut(s)	1040
EcoT14I	CCWWGG	2 cut(s)	291, 918
EcoT22I	ATGCAT	4 cut(s)	151, 360, 679, 1174
ErhI	CCWWGG	2 cut(s)	291, 918
FaeI	CATG	5 cut(s)	74, 295, 358, 448, 542
FalI	AAGNNNNNCTT	2 cut(s)	1263, 1295
FaqI	GGGAC	2 cut(s)	59, 834
FatI	CATG	5 cut(s)	70, 291, 354, 444, 538
FauNDI	CATATG	1 cut(s)	151
FokI	GGATG	8 cut(s)	274, 558, 727, 740, 745, 759, 849, 935
FspBI	CTAG	2 cut(s)	953, 987
HaeIII	GGCC	3 cut(s)	434, 704, 806
Hin1II	CATG	5 cut(s)	74, 295, 358, 448, 542
HindIII	AAGCTT	1 cut(s)	1254
HinfI	GANTC	4 cut(s)	67, 425, 439, 691
HphI	GGTGA	1 cut(s)	780
Hpy166II	GTNNAC	2 cut(s)	278, 1024
Hpy188I	TCNGA	3 cut(s)	66, 1141, 1219
Hpy188III	TCNNGA	3 cut(s)	647, 695, 1204
Hpy8I	GTNNAC	2 cut(s)	278, 1024
HpyAV	CCTTC	2 cut(s)	411, 515
HpyCH4III	ACNGT	6 cut(s)	54, 109, 187, 502, 553, 1028
HpyF10VI	GCNNNNNNNGC	4 cut(s)	317, 346, 350, 355
HpyF3I	CTNAG	7 cut(s)	82, 324, 336, 458, 893, 1185, 1280
Hsp92II	CATG	5 cut(s)	74, 295, 358, 448, 542
Kzo9I	GATC	1 cut(s)	454
LmnI	GCTCC	1 cut(s)	316
LweI	GCATC	3 cut(s)	395, 664, 705
MaeI	CTAG	2 cut(s)	953, 987
MaeIII	GTNAC	3 cut(s)	461, 1028, 1081
MalI	GATC	1 cut(s)	456
MboI	GATC	1 cut(s)	454
MboII	GAAGA	2 cut(s)	369, 381
MfeI	CAATTG	1 cut(s)	1059
MhlI	GDGCHC	1 cut(s)	606
MluCI	AATT	6 cut(s)	581, 586, 962, 1054, 1059, 1073
MmeI	TCCRAC	2 cut(s)	128, 512
MnlI	CCTC	5 cut(s)	91, 333, 487, 705, 817
Mph1103I	ATGCAT	4 cut(s)	151, 360, 679, 1174
MroXI	GAANNNNTTC	1 cut(s)	1020
MseI	TTAA	2 cut(s)	60, 584
MunI	CAATTG	1 cut(s)	1059
Mva1269I	GAATGC	1 cut(s)	677
MwoI	GCNNNNNNNGC	4 cut(s)	317, 346, 350, 355
NcoI	CCATGG	1 cut(s)	291
NdeI	CATATG	1 cut(s)	151
NdeII	GATC	1 cut(s)	454
NlaIII	CATG	5 cut(s)	74, 295, 358, 448, 542
NlaIV	GGNNCC	3 cut(s)	369, 433, 1041
NmuCI	GTSAC	1 cut(s)	1028
NsiI	ATGCAT	4 cut(s)	151, 360, 679, 1174
PceI	AGGCCT	1 cut(s)	806
PctI	GAATGC	1 cut(s)	677
PdmI	GAANNNNTTC	1 cut(s)	1020
PfeI	GAWTC	4 cut(s)	67, 425, 439, 691
PflFI	GACNNNGTC	1 cut(s)	642
PpuMI	RGGWCCY	1 cut(s)	1040
PsiI	TTATAA	1 cut(s)	1130
Psp5II	RGGWCCY	1 cut(s)	1040
PspN4I	GGNNCC	3 cut(s)	369, 433, 1041
PspPI	GGNCC	3 cut(s)	95, 432, 1040
PspPPI	RGGWCCY	1 cut(s)	1040
PsyI	GACNNNGTC	1 cut(s)	642
RsaI	GTAC	6 cut(s)	550, 570, 633, 930, 991, 1102
RsaNI	GTAC	6 cut(s)	549, 569, 632, 929, 990, 1101
SaqAI	TTAA	2 cut(s)	60, 584
Sau3AI	GATC	1 cut(s)	454
Sau96I	GGNCC	3 cut(s)	95, 432, 1040
ScaI	AGTACT	2 cut(s)	550, 991
SduI	GDGCHC	1 cut(s)	606
SfaNI	GCATC	3 cut(s)	395, 664, 705
SinI	GGWCC	2 cut(s)	95, 1040
SmlI	CTYRAG	1 cut(s)	381
SmoI	CTYRAG	1 cut(s)	381
Sse9I	AATT	6 cut(s)	581, 586, 962, 1054, 1059, 1073
SseBI	AGGCCT	1 cut(s)	806
SspI	AATATT	1 cut(s)	907
SspMI	CTAG	2 cut(s)	953, 987
StuI	AGGCCT	1 cut(s)	806
StyI	CCWWGG	2 cut(s)	291, 918
TaaI	ACNGT	6 cut(s)	54, 109, 187, 502, 553, 1028
TasI	AATT	6 cut(s)	581, 586, 962, 1054, 1059, 1073
TatI	WGTACW	4 cut(s)	548, 568, 989, 1100
TfiI	GAWTC	4 cut(s)	67, 425, 439, 691
Tru1I	TTAA	2 cut(s)	60, 584
Tru9I	TTAA	2 cut(s)	60, 584
TscAI	CASTG	3 cut(s)	192, 457, 1033
TseFI	GTSAC	1 cut(s)	1028
Tsp45I	GTSAC	1 cut(s)	1028
TspDTI	ATGAA	6 cut(s)	8, 255, 381, 548, 825, 1110
TspGWI	ACGGA	2 cut(s)	303, 619
TspRI	CASTG	3 cut(s)	192, 457, 1033
Tth111I	GACNNNGTC	1 cut(s)	642
VpaK11BI	GGWCC	2 cut(s)	95, 1040
XagI	CCTNNNNNAGG	1 cut(s)	81
XapI	RAATTY	3 cut(s)	586, 962, 1073
XcmI	CCANNNNNNNNNTGG	1 cut(s)	361
XmnI	GAANNNNTTC	1 cut(s)	1020
XspI	CTAG	2 cut(s)	953, 987
ZrmI	AGTACT	2 cut(s)	550, 991
Zsp2I	ATGCAT	4 cut(s)	151, 360, 679, 1174

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.