Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0002646.1

Orthogroup ID

OG0006436

Physical Location & Seq

Genomic Coordinates Forward (+)

77484 .. 79336

Gene Structure 1853 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0002646.1_g000018.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 576 bp

atgtgtagttttctcaaaggaagcaagctatggcgttatgctactagagatattactcaaccaaccaagctcaataacgaaactgatgacaagtttgctgaacgacttgaagattgggacaataagaaccaccaggtcatcacttggtttcgcaacaccttatcttcctcaatcaaccatcaatttggcctgttcaacacagccaaggacatttggaattttttaaagaagcgctatacaaccacagatcttgctcacagatatcaacttttgagcacccttcatcgtatgcgccaagaacctgaggatggtcgtacgtccttcagcccgtccggcgctgctgcggtgtcctcccatcattttgcaatgggaagattgaccggtcaaggattgtcgacggtggtccatggtgacgcatatgatgacgaaacccgcagacattgccggattcaatctccggtgagagaagaaatcagtgaggggggaggagagagagaagagattgaagaggggggggaagagagagtcggagaggagtcaaagggcgacggcattgctggattcagtctccggtga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF4219 Retrotran_gag_2 gag_pre-integrs rve

Protein Analysis

191

Amino Acids

21.82

Weight (kDa)

6.07

Isoelectric Point (pI)

45.36

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006436)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G21280
fragaria_vesca	FvH4_3g37931 FvH4_3g37931 FvH4_3g37931
malus_domestica	MD01G1094300.v1.1 MD02G1156200.v1.1 MD10G1309400.v1.1 MD14G1005300.v1.1
pyrus_communis	pycom02g16670 pycom03g10030 pycom04g21390 pycom05g29420 pycom07g08570 pycom08g06430 pycom15g03080 pycom15g21690
rosa_chinensis	RchiOBHm_Chr4g0394011 RchiOBHm_Chr4g0436631
rosa_multiflora	Rmu_sc0002646.1_g000018 Rmu_sc0004135.1_g000007
rosa_roxburghii	Rroxscaffold_2G00099130
rosa_samantha	Rh1AG086000 Rh2BG003200 Rh5DG450100 Rh7AG095400
rosa_wichuraiana	Rw1G012660

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	395
AciI	CCGC	2 cut(s)	344, 433
AcsI	RAATTY	1 cut(s)	217
AcuI	CTGAAG	1 cut(s)	307
AfaI	GTAC	1 cut(s)	316
AfeI	AGCGCT	1 cut(s)	233
AfiI	CCNNNNNNNGG	1 cut(s)	308
AgeI	ACCGGT	1 cut(s)	380
AgsI	TTSAA	4 cut(s)	110, 196, 452, 506
AjnI	CCWGG	1 cut(s)	132
AluBI	AGCT	2 cut(s)	28, 70
AluI	AGCT	2 cut(s)	28, 70
Alw21I	GWGCWC	1 cut(s)	278
Alw26I	GTCTC	1 cut(s)	572
Aor51HI	AGCGCT	1 cut(s)	233
AoxI	GGCC	1 cut(s)	187
ApeKI	GCWGC	2 cut(s)	338, 341
ApoI	RAATTY	1 cut(s)	217
AsiGI	ACCGGT	1 cut(s)	380
AspLEI	GCGC	3 cut(s)	234, 294, 338
AspS9I	GGNCC	1 cut(s)	403
AsuHPI	GGTGA	2 cut(s)	422, 472
AvaII	GGWCC	1 cut(s)	403
AxyI	CCTNAGG	1 cut(s)	303
Bbv12I	GWGCWC	1 cut(s)	278
BbvI	GCAGC	2 cut(s)	325, 328
BccI	CCATC	3 cut(s)	186, 302, 363
BceAI	ACGGC	1 cut(s)	565
BcgI	CGANNNNNNTGC	2 cut(s)	536, 570
BciT130I	CCWGG	1 cut(s)	134
BcoDI	GTCTC	1 cut(s)	572
BfaI	CTAG	1 cut(s)	45
BfoI	RGCGCY	2 cut(s)	235, 339
BglI	GCCNNNNNGGC	1 cut(s)	333
BglII	AGATCT	1 cut(s)	247
BisI	GCNGC	2 cut(s)	339, 342
BlsI	GCNGC	2 cut(s)	340, 343
Bme1390I	CCNGG	1 cut(s)	134
Bme18I	GGWCC	1 cut(s)	403
BmgT120I	GGNCC	1 cut(s)	403
BmrFI	CCNGG	1 cut(s)	134
BoxI	GACNNNNGTC	1 cut(s)	401
BsaJI	CCNNGG	2 cut(s)	204, 406
BsaWI	WCCGGW	3 cut(s)	380, 457, 570
Bsc4I	CCNNNNNNNGG	1 cut(s)	308
Bse118I	RCCGGY	1 cut(s)	380
Bse21I	CCTNAGG	1 cut(s)	303
Bse3DI	GCAATG	3 cut(s)	372, 439, 552
BseBI	CCWGG	1 cut(s)	134
BseDI	CCNNGG	2 cut(s)	204, 406
BseGI	GGATG	1 cut(s)	313
BseLI	CCNNNNNNNGG	1 cut(s)	308
BseMI	GCAATG	3 cut(s)	372, 439, 552
BseMII	CTCAG	1 cut(s)	294
BseRI	GAGGAG	2 cut(s)	501, 548
BseXI	GCAGC	2 cut(s)	325, 328
BshFI	GGCC	1 cut(s)	189
BshTI	ACCGGT	1 cut(s)	380
BsiHKAI	GWGCWC	1 cut(s)	278
BsiSI	CCGG	5 cut(s)	333, 381, 445, 458, 571
BsiWI	CGTACG	1 cut(s)	314
BslFI	GGGAC	1 cut(s)	131
BslI	CCNNNNNNNGG	1 cut(s)	308
BsmAI	GTCTC	1 cut(s)	572
BsmFI	GGGAC	1 cut(s)	131
BsnI	GGCC	1 cut(s)	189
Bsp1286I	GDGCHC	1 cut(s)	278
Bsp143I	GATC	1 cut(s)	247
Bsp19I	CCATGG	1 cut(s)	406
BspACI	CCGC	2 cut(s)	344, 433
BspANI	GGCC	1 cut(s)	189
BspCNI	CTCAG	1 cut(s)	295
BsrDI	GCAATG	3 cut(s)	372, 439, 552
BsrFI	RCCGGY	1 cut(s)	380
BssAI	RCCGGY	1 cut(s)	380
BssECI	CCNNGG	2 cut(s)	204, 406
BssMI	GATC	1 cut(s)	247
BssT1I	CCWWGG	2 cut(s)	204, 406
Bst2UI	CCWGG	1 cut(s)	134
Bst4CI	ACNGT	1 cut(s)	400
Bst6I	CTCTTC	3 cut(s)	492, 501, 513
BstAPI	GCANNNNNTGC	1 cut(s)	441
BstC8I	GCNNGC	1 cut(s)	26
BstDEI	CTNAG	1 cut(s)	303
BstDSI	CCRYGG	1 cut(s)	406
BstF5I	GGATG	1 cut(s)	313
BstH2I	RGCGCY	2 cut(s)	235, 339
BstHHI	GCGC	3 cut(s)	234, 294, 338
BstKTI	GATC	1 cut(s)	250
BstMAI	GTCTC	1 cut(s)	572
BstMBI	GATC	1 cut(s)	247
BstMWI	GCNNNNNNNGC	2 cut(s)	333, 441
BstNI	CCWGG	1 cut(s)	134
BstPAI	GACNNNNGTC	1 cut(s)	401
BstSCI	CCNGG	1 cut(s)	132
BstV1I	GCAGC	2 cut(s)	325, 328
BstX2I	RGATCY	1 cut(s)	247
BstXI	CCANNNNNNTGG	1 cut(s)	185
BstYI	RGATCY	1 cut(s)	247
Bsu36I	CCTNAGG	1 cut(s)	303
BsuRI	GGCC	1 cut(s)	189
BtgI	CCRYGG	1 cut(s)	406
BtsCI	GGATG	1 cut(s)	313
BtsIMutI	CAGTG	1 cut(s)	481
Cac8I	GCNNGC	1 cut(s)	26
CfoI	GCGC	3 cut(s)	234, 294, 338
Cfr10I	RCCGGY	1 cut(s)	380
Cfr13I	GGNCC	1 cut(s)	403
CseI	GACGC	1 cut(s)	422
CsiI	ACCWGGT	1 cut(s)	132
Csp6I	GTAC	1 cut(s)	315
CspAI	ACCGGT	1 cut(s)	380
CspCI	CAANNNNNGTGG	2 cut(s)	232, 267
CviAII	CATG	1 cut(s)	407
CviJI	RGCY	5 cut(s)	28, 70, 189, 203, 327
CviKI_1	RGCY	5 cut(s)	28, 70, 189, 203, 327
CviQI	GTAC	1 cut(s)	315
DdeI	CTNAG	1 cut(s)	303
DpnI	GATC	1 cut(s)	249
DpnII	GATC	1 cut(s)	247
DraI	TTTAAA	1 cut(s)	225
Eam1104I	CTCTTC	3 cut(s)	492, 501, 513
EarI	CTCTTC	3 cut(s)	492, 501, 513
Eco130I	CCWWGG	2 cut(s)	204, 406
Eco32I	GATATC	1 cut(s)	263
Eco47I	GGWCC	1 cut(s)	403
Eco47III	AGCGCT	1 cut(s)	233
Eco57I	CTGAAG	1 cut(s)	307
Eco81I	CCTNAGG	1 cut(s)	303
EcoRII	CCWGG	1 cut(s)	132
EcoRV	GATATC	1 cut(s)	263
EcoT14I	CCWWGG	2 cut(s)	204, 406
ErhI	CCWWGG	2 cut(s)	204, 406
FaeI	CATG	1 cut(s)	410
FaiI	YATR	7 cut(s)	31, 39, 237, 290, 408, 418, 420
FaqI	GGGAC	1 cut(s)	131
FatI	CATG	1 cut(s)	406
FauI	CCCGC	1 cut(s)	440
FauNDI	CATATG	1 cut(s)	418
FblI	GTMKAC	1 cut(s)	395
Fnu4HI	GCNGC	2 cut(s)	339, 342
FokI	GGATG	1 cut(s)	320
Fsp4HI	GCNGC	2 cut(s)	339, 342
FspBI	CTAG	1 cut(s)	45
GlaI	GCGC	3 cut(s)	233, 293, 337
GluI	GCNGC	2 cut(s)	339, 342
HaeII	RGCGCY	2 cut(s)	235, 339
HaeIII	GGCC	1 cut(s)	189
HapII	CCGG	5 cut(s)	333, 381, 445, 458, 571
HgaI	GACGC	1 cut(s)	422
HhaI	GCGC	3 cut(s)	234, 294, 338
Hin1II	CATG	1 cut(s)	410
Hin6I	GCGC	3 cut(s)	232, 292, 336
HinP1I	GCGC	3 cut(s)	232, 292, 336
HincII	GTYRAC	1 cut(s)	396
HindII	GTYRAC	1 cut(s)	396
HinfI	GANTC	4 cut(s)	448, 525, 536, 561
HpaII	CCGG	5 cut(s)	333, 381, 445, 458, 571
HphI	GGTGA	2 cut(s)	422, 472
Hpy166II	GTNNAC	1 cut(s)	396
Hpy188I	TCNGA	1 cut(s)	530
Hpy8I	GTNNAC	1 cut(s)	396
Hpy99I	CGWCG	2 cut(s)	400, 551
HpyAV	CCTTC	2 cut(s)	290, 331
HpyCH4III	ACNGT	1 cut(s)	400
HpyCH4IV	ACGT	1 cut(s)	317
HpyCH4V	TGCA	1 cut(s)	365
HpyF10VI	GCNNNNNNNGC	2 cut(s)	333, 441
HpyF3I	CTNAG	1 cut(s)	303
HpySE526I	ACGT	1 cut(s)	317
Hsp92II	CATG	1 cut(s)	410
HspAI	GCGC	3 cut(s)	232, 292, 336
Kzo9I	GATC	1 cut(s)	247
LpnPI	CCDG	9 cut(s)	119, 146, 203, 315, 346, 394, 458, 471, 543
Lsp1109I	GCAGC	2 cut(s)	325, 328
MabI	ACCWGGT	1 cut(s)	132
MaeI	CTAG	1 cut(s)	45
MaeII	ACGT	1 cut(s)	317
MaeIII	GTNAC	1 cut(s)	410
MalI	GATC	1 cut(s)	249
MboI	GATC	1 cut(s)	247
MboII	GAAGA	7 cut(s)	122, 156, 384, 479, 509, 518, 530
MflI	RGATCY	1 cut(s)	247
MhlI	GDGCHC	1 cut(s)	278
MluCI	AATT	2 cut(s)	182, 217
MlyI	GAGTC	2 cut(s)	534, 545
MmeI	TCCRAC	1 cut(s)	508
MnlI	CCTC	7 cut(s)	178, 298, 361, 472, 479, 502, 526
MseI	TTAA	1 cut(s)	224
MspI	CCGG	5 cut(s)	333, 381, 445, 458, 571
MspR9I	CCNGG	1 cut(s)	134
MvaI	CCWGG	1 cut(s)	134
MwoI	GCNNNNNNNGC	2 cut(s)	333, 441
NcoI	CCATGG	1 cut(s)	406
NdeI	CATATG	1 cut(s)	418
NdeII	GATC	1 cut(s)	247
NlaIII	CATG	1 cut(s)	410
NmuCI	GTSAC	1 cut(s)	410
PfeI	GAWTC	2 cut(s)	448, 561
Pfl23II	CGTACG	1 cut(s)	314
PinAI	ACCGGT	1 cut(s)	380
PkrI	GCNGC	2 cut(s)	340, 343
PleI	GAGTC	2 cut(s)	533, 544
PpsI	GAGTC	2 cut(s)	533, 544
PshAI	GACNNNNGTC	1 cut(s)	401
Psp6I	CCWGG	1 cut(s)	132
PspGI	CCWGG	1 cut(s)	132
PspLI	CGTACG	1 cut(s)	314
PspPI	GGNCC	1 cut(s)	403
PsuI	RGATCY	1 cut(s)	247
RsaI	GTAC	1 cut(s)	316
RsaNI	GTAC	1 cut(s)	315
SalI	GTCGAC	1 cut(s)	394
SaqAI	TTAA	1 cut(s)	224
SatI	GCNGC	2 cut(s)	339, 342
Sau3AI	GATC	1 cut(s)	247
Sau96I	GGNCC	1 cut(s)	403
SchI	GAGTC	2 cut(s)	534, 545
ScrFI	CCNGG	1 cut(s)	134
SduI	GDGCHC	1 cut(s)	278
SetI	ASST	6 cut(s)	30, 72, 138, 161, 304, 320
SexAI	ACCWGGT	1 cut(s)	132
SinI	GGWCC	1 cut(s)	403
Sse9I	AATT	2 cut(s)	182, 217
SsiI	CCGC	2 cut(s)	344, 433
SspMI	CTAG	1 cut(s)	45
StyD4I	CCNGG	1 cut(s)	132
StyI	CCWWGG	2 cut(s)	204, 406
TaaI	ACNGT	1 cut(s)	400
TaiI	ACGT	1 cut(s)	320
TaqI	TCGA	1 cut(s)	395
TasI	AATT	2 cut(s)	182, 217
TfiI	GAWTC	2 cut(s)	448, 561
Tru1I	TTAA	1 cut(s)	224
Tru9I	TTAA	1 cut(s)	224
TscAI	CASTG	1 cut(s)	481
TseFI	GTSAC	1 cut(s)	410
TseI	GCWGC	2 cut(s)	338, 341
Tsp45I	GTSAC	1 cut(s)	410
TspDTI	ATGAA	1 cut(s)	272
TspRI	CASTG	1 cut(s)	481
VpaK11BI	GGWCC	1 cut(s)	403
XapI	RAATTY	1 cut(s)	217
XmiI	GTMKAC	1 cut(s)	395
XspI	CTAG	1 cut(s)	45

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.