Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr8

Orthogroup ID

OG0006436

Physical Location & Seq

Genomic Coordinates Forward (+)

5019064 .. 5019835

Gene Structure 772 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom08g06430.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 546 bp

ATGCTATTCATTCTCTTATTCCTTACTCTAGAGAAGAGAATGTATACATTGGTGATGGACAAGGATCGCTATACGGGGATGATGTTTTTTCAAGGGCCAATTAAAGAAGGTTTCTATCCTCTCCAAGGGATCCCCTCAACATCTGCACATTCAGTTTTCCTAAGTTCTAAAACTACACTTCAGACATGGCATAGAAAGCATGGGCATCCCTTTATAGCAATGTTCAGGAAGATTTTAAATAAAGCTCAACTTGCTCACAGTGATGCCAAGTCTGTAAATTTCTTATGCATATATTGTGTTATTGGTAAAAATCATAAGTTACCATTTTCATCTAGTACTAGTAGTGTCTCTGCCAGTCTTGAGTTGATTCATTGTGATGTTTGGGCCCCAGCTCCAATTCTATCTGTCAGTGGTTACAAGTATTATGTTCTATTTGTAGATGAGTTCACTAAATATACATGGTTGTTTCCATTGAAGGCAAAGTCTAAAGTTTTTTCTGTATTTGTCAGTTTTACAGCATATGTTGAAAATTTGCTATGCGTTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000375 GO:0000377 GO:0000398 GO:0000993 GO:0001098 GO:0001099 GO:0003674 GO:0003676 GO:0003723 GO:0003729 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005737 GO:0005739 GO:0005849 GO:0006139 GO:0006351 GO:0006353 GO:0006366 GO:0006369 GO:0006378 GO:0006379 GO:0006396 GO:0006397 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0008380 GO:0009058 GO:0009059 GO:0009987 GO:0010467 GO:0016070 GO:0016071 GO:0018130 GO:0019438 GO:0019899 GO:0031123 GO:0031124 GO:0031974 GO:0031981 GO:0032774 GO:0032991 GO:0034641 GO:0034645 GO:0034654 GO:0043170 GO:0043175 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0043631 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044271 GO:0044422 GO:0044424 GO:0044428 GO:0044444 GO:0044446 GO:0044451 GO:0044464 GO:0044877 GO:0046483 GO:0070013 GO:0070063 GO:0071704 GO:0090304 GO:0090305 GO:0090501 GO:0097159 GO:0097659 GO:1901360 GO:1901362 GO:1901363 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko03015 ko04016 ko04075 map03015 map04016 map04075

Pfam Domains

Protein Families

CTD_bind

Protein Analysis

182

Amino Acids

20.73

Weight (kDa)

9.43

Isoelectric Point (pI)

28.23

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
gag_pre-integrs	PF13976	38 - 103	2.8e-07	GAG-pre-integrase domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0006436)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G21280
fragaria_vesca	FvH4_3g37931 FvH4_3g37931 FvH4_3g37931
malus_domestica	MD01G1094300.v1.1 MD02G1156200.v1.1 MD10G1309400.v1.1 MD14G1005300.v1.1
pyrus_communis	pycom02g16670 pycom03g10030 pycom04g21390 pycom05g29420 pycom07g08570 pycom08g06430 pycom15g03080 pycom15g21690
rosa_chinensis	RchiOBHm_Chr4g0394011 RchiOBHm_Chr4g0436631
rosa_multiflora	Rmu_sc0002646.1_g000018 Rmu_sc0004135.1_g000007
rosa_roxburghii	Rroxscaffold_2G00099130
rosa_samantha	Rh1AG086000 Rh2BG003200 Rh5DG450100 Rh7AG095400
rosa_wichuraiana	Rw1G012660

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	44
AclWI	GGATC	3 cut(s)	72, 124, 137
AcsI	RAATTY	2 cut(s)	277, 529
AcuI	CTGAAG	1 cut(s)	164
AfaI	GTAC	1 cut(s)	337
AfiI	CCNNNNNNNGG	1 cut(s)	125
AgsI	TTSAA	3 cut(s)	92, 475, 527
AhlI	ACTAGT	1 cut(s)	338
AluBI	AGCT	2 cut(s)	245, 392
AluI	AGCT	2 cut(s)	245, 392
Alw26I	GTCTC	1 cut(s)	352
AlwI	GGATC	3 cut(s)	72, 124, 137
AoxI	GGCC	2 cut(s)	95, 384
ApaI	GGGCCC	1 cut(s)	388
ApoI	RAATTY	2 cut(s)	277, 529
AspS9I	GGNCC	3 cut(s)	95, 384, 385
AsuHPI	GGTGA	1 cut(s)	64
BaeGI	GKGCMC	1 cut(s)	388
BamHI	GGATCC	1 cut(s)	129
BanII	GRGCYC	1 cut(s)	388
BccI	CCATC	1 cut(s)	49
BcoDI	GTCTC	1 cut(s)	352
BcuI	ACTAGT	1 cut(s)	338
BfaI	CTAG	3 cut(s)	29, 333, 339
BmcAI	AGTACT	1 cut(s)	337
BmgT120I	GGNCC	3 cut(s)	95, 384, 385
BmiI	GGNNCC	3 cut(s)	131, 386, 387
BmsI	GCATC	2 cut(s)	214, 253
BpuEI	CTTGAG	1 cut(s)	380
BsaJI	CCNNGG	1 cut(s)	124
Bsc4I	CCNNNNNNNGG	1 cut(s)	125
Bse1I	ACTGG	1 cut(s)	354
Bse3DI	GCAATG	1 cut(s)	225
BseDI	CCNNGG	1 cut(s)	124
BseGI	GGATG	2 cut(s)	84, 205
BseLI	CCNNNNNNNGG	1 cut(s)	125
BseMI	GCAATG	1 cut(s)	225
BseNI	ACTGG	1 cut(s)	354
BseSI	GKGCMC	1 cut(s)	388
BseYI	CCCAGC	1 cut(s)	388
BsgI	GTGCAG	1 cut(s)	129
BshFI	GGCC	2 cut(s)	97, 386
BslI	CCNNNNNNNGG	1 cut(s)	125
BsmAI	GTCTC	1 cut(s)	352
BsnI	GGCC	2 cut(s)	97, 386
Bsp120I	GGGCCC	1 cut(s)	384
Bsp1286I	GDGCHC	1 cut(s)	388
Bsp143I	GATC	2 cut(s)	64, 129
BspANI	GGCC	2 cut(s)	97, 386
BspLI	GGNNCC	3 cut(s)	131, 386, 387
BspPI	GGATC	3 cut(s)	72, 124, 137
BsrDI	GCAATG	1 cut(s)	225
BsrI	ACTGG	1 cut(s)	354
BssECI	CCNNGG	1 cut(s)	124
BssMI	GATC	2 cut(s)	64, 129
BssNAI	GTATAC	1 cut(s)	45
BssT1I	CCWWGG	1 cut(s)	124
Bst1107I	GTATAC	1 cut(s)	45
Bst4CI	ACNGT	1 cut(s)	260
Bst6I	CTCTTC	1 cut(s)	29
BstDEI	CTNAG	1 cut(s)	161
BstENI	CCTNNNNNAGG	1 cut(s)	123
BstF5I	GGATG	2 cut(s)	84, 205
BstKTI	GATC	2 cut(s)	67, 132
BstMAI	GTCTC	1 cut(s)	352
BstMBI	GATC	2 cut(s)	64, 129
BstMWI	GCNNNNNNNGC	2 cut(s)	196, 251
BstSLI	GKGCMC	1 cut(s)	388
BstX2I	RGATCY	1 cut(s)	129
BstYI	RGATCY	1 cut(s)	129
BstZ17I	GTATAC	1 cut(s)	45
BsuRI	GGCC	2 cut(s)	97, 386
BtsCI	GGATG	2 cut(s)	84, 205
BtsIMutI	CAGTG	2 cut(s)	265, 415
Cfr13I	GGNCC	3 cut(s)	95, 384, 385
Csp6I	GTAC	1 cut(s)	336
CviAII	CATG	3 cut(s)	186, 200, 459
CviJI	RGCY	4 cut(s)	97, 245, 386, 392
CviKI_1	RGCY	4 cut(s)	97, 245, 386, 392
CviQI	GTAC	1 cut(s)	336
DdeI	CTNAG	1 cut(s)	161
DpnI	GATC	2 cut(s)	66, 131
DpnII	GATC	2 cut(s)	64, 129
DraI	TTTAAA	1 cut(s)	237
Eam1104I	CTCTTC	1 cut(s)	29
EarI	CTCTTC	1 cut(s)	29
Eco130I	CCWWGG	1 cut(s)	124
Eco24I	GRGCYC	1 cut(s)	388
Eco57I	CTGAAG	1 cut(s)	164
EcoNI	CCTNNNNNAGG	1 cut(s)	123
EcoO109I	RGGNCCY	1 cut(s)	385
EcoT14I	CCWWGG	1 cut(s)	124
EcoT22I	ATGCAT	1 cut(s)	290
EcoT38I	GRGCYC	1 cut(s)	388
ErhI	CCWWGG	1 cut(s)	124
FaeI	CATG	3 cut(s)	189, 203, 462
FalI	AAGNNNNNCTT	2 cut(s)	234, 266
FatI	CATG	3 cut(s)	185, 199, 458
FauNDI	CATATG	1 cut(s)	520
FblI	GTMKAC	1 cut(s)	44
FokI	GGATG	2 cut(s)	91, 192
FriOI	GRGCYC	1 cut(s)	388
FspBI	CTAG	3 cut(s)	29, 333, 339
GsaI	CCCAGC	1 cut(s)	392
HaeIII	GGCC	2 cut(s)	97, 386
Hin1II	CATG	3 cut(s)	189, 203, 462
HinfI	GANTC	1 cut(s)	367
HphI	GGTGA	1 cut(s)	64
Hpy166II	GTNNAC	2 cut(s)	45, 447
Hpy188I	TCNGA	1 cut(s)	183
Hpy188III	TCNNGA	3 cut(s)	29, 226, 359
Hpy8I	GTNNAC	2 cut(s)	45, 447
HpyAV	CCTTC	2 cut(s)	101, 469
HpyCH4III	ACNGT	1 cut(s)	260
HpyCH4V	TGCA	2 cut(s)	146, 288
HpyF10VI	GCNNNNNNNGC	2 cut(s)	196, 251
HpyF3I	CTNAG	1 cut(s)	161
Hsp92II	CATG	3 cut(s)	189, 203, 462
Kzo9I	GATC	2 cut(s)	64, 129
LmnI	GCTCC	1 cut(s)	397
LpnPI	CCDG	3 cut(s)	211, 367, 402
LweI	GCATC	2 cut(s)	214, 253
MaeI	CTAG	3 cut(s)	29, 333, 339
MaeIII	GTNAC	2 cut(s)	318, 413
MalI	GATC	2 cut(s)	66, 131
MboI	GATC	2 cut(s)	64, 129
MboII	GAAGA	2 cut(s)	46, 241
MflI	RGATCY	1 cut(s)	129
MhlI	GDGCHC	1 cut(s)	388
MluCI	AATT	4 cut(s)	99, 277, 396, 529
MnlI	CCTC	2 cut(s)	129, 145
Mph1103I	ATGCAT	1 cut(s)	290
MseI	TTAA	3 cut(s)	102, 236, 544
MslI	CAYNNNNRTG	2 cut(s)	261, 375
MwoI	GCNNNNNNNGC	2 cut(s)	196, 251
NdeI	CATATG	1 cut(s)	520
NdeII	GATC	2 cut(s)	64, 129
NlaIII	CATG	3 cut(s)	189, 203, 462
NlaIV	GGNNCC	3 cut(s)	131, 386, 387
NsiI	ATGCAT	1 cut(s)	290
PfeI	GAWTC	1 cut(s)	367
PspFI	CCCAGC	1 cut(s)	388
PspN4I	GGNNCC	3 cut(s)	131, 386, 387
PspOMI	GGGCCC	1 cut(s)	384
PspPI	GGNCC	3 cut(s)	95, 384, 385
PsuI	RGATCY	1 cut(s)	129
RsaI	GTAC	1 cut(s)	337
RsaNI	GTAC	1 cut(s)	336
RseI	CAYNNNNRTG	2 cut(s)	261, 375
SaqAI	TTAA	3 cut(s)	102, 236, 544
Sau3AI	GATC	2 cut(s)	64, 129
Sau96I	GGNCC	3 cut(s)	95, 384, 385
ScaI	AGTACT	1 cut(s)	337
SduI	GDGCHC	1 cut(s)	388
SetI	ASST	3 cut(s)	112, 247, 394
SfaNI	GCATC	2 cut(s)	214, 253
SmiMI	CAYNNNNRTG	2 cut(s)	261, 375
SmlI	CTYRAG	1 cut(s)	359
SmoI	CTYRAG	1 cut(s)	359
SpeI	ACTAGT	1 cut(s)	338
Sse9I	AATT	4 cut(s)	99, 277, 396, 529
SspMI	CTAG	3 cut(s)	29, 333, 339
StyI	CCWWGG	1 cut(s)	124
TaaI	ACNGT	1 cut(s)	260
TasI	AATT	4 cut(s)	99, 277, 396, 529
TatI	WGTACW	1 cut(s)	335
TfiI	GAWTC	1 cut(s)	367
Tru1I	TTAA	3 cut(s)	102, 236, 544
Tru9I	TTAA	3 cut(s)	102, 236, 544
TscAI	CASTG	2 cut(s)	265, 415
TspDTI	ATGAA	2 cut(s)	318, 359
TspRI	CASTG	2 cut(s)	265, 415
XagI	CCTNNNNNAGG	1 cut(s)	123
XapI	RAATTY	2 cut(s)	277, 529
XbaI	TCTAGA	1 cut(s)	28
XmiI	GTMKAC	1 cut(s)	44
XspI	CTAG	3 cut(s)	29, 333, 339
ZrmI	AGTACT	1 cut(s)	337
Zsp2I	ATGCAT	1 cut(s)	290

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.