Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr5

Orthogroup ID

OG0006436

Physical Location & Seq

Genomic Coordinates Forward (+)

29844815 .. 29847586

Gene Structure 2772 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom05g29420.4

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1470 bp

ATGGGATATTGCGCGGTAAAAGCGAGCCAAGTGCAGCGGACGAGCCAAGCTCAAGACTTTACTTCCTCTCTCTCCTCTCTCTCACCTCTGACTCTAGAGAGAGAAAGTGGTGGGAGCTTCCACAGCTCCACTAACAGGTATATATTTTTGGTTCCCAATGCCCAAAGCATTTCAGATTTCACTTGCAATCTTTTGCCGCCCTCCGCCATTAAACTCCTCTCCAACTTCCTGTGCAACTTTGATTCGGTTTCGATCTATTTGCAACGTATTAAAGAAGCTCGTGATTATCTGTTTGCTGCTGGGGTTCAGTTTGATGATGATGACATTGTGATTTTGACTTTGAATGGTCTCTCCTCTGAATATAATACTTTGAGATCAATTGTTCGAGGTCGTGAGAATGTTATCTCCATGAAAGATCTCCGGTCTCAGTTACTTGCTGAGGAAGCCATGGTTGAGAACATTCCGATTACACCTTTCTTGTCTGCTATGGTTGCTCGAAATAATGGCACTAGTTCCAAAGCTGAGGATCATTCGCGTAATGTGTCTTATGGTGGTTCTTCTCAGTCTACGTTATATTCGTCTGTTCCTTCTGGGTTTAAGCCATCCTATAGTAAGAACAAATACAAAGGGAAATTTCAGTATCATCCTCATTCTCGTTTTGGGAGTTCCAAGACCACTTATGGCCAGTATAATGTGAATTCTGCTCCTGGTATTCTTGGTGCTTCTCCACCACCGCAACAGGATTTTTCGAGCACTTCCTGTCAAATTTGTGGCAAGTTTGGACATCTCGCTCCTACTTGCAGATTTAGGAATGTTGATAGTACTGTTTCTGAGGGTTGTCAAATTTGTGGGAAGAAGAATCACATTGCAAAATTCTGTCATTTCAGGAACTCTAATTCCTCTCCTTCAGTTCCGACTGCAATGCATGTTTCTCCATCGCAACATCATCAGTCCACTGTGCATAAACTGTGCCTGGATAATCATTGTAGGCTAATATATGATGCTTCCTGTTTTTGGATCCAGGACAAAGTCACAGGGAGGATTCTCTTTCAAGGCAAATGCAGTAATGGATTGTATCCCATACCACTTCCAGCACGCGTTCGCCCTGTTTCTTCTCAACCTCAAGCTGCCTATCTTGGCTGTCAAGTACCTTCTAGTCTCTGGCATAGTCGATTAGGTCACCCGTCTAATTCTGTGATCTCGTTAATGTTGAAGAAGTGTAATCTGTCTGTTATACCTGATTCAGTGTCTGTGATGTGTCATACTTGTCTGGAAGGCAAATTCTGTAAATTGCCCTTTGTTAAGTCTGTGTCAAAGTCTTTGCACCCCTTTGAAGTCATTCACAGTGATGTATGGGGTCCTTCTCCTTGTCCTTCCATAGATGGTTTTAGTCCTTTCGAAATTTTCTGTTGGACAAAGGCATCAAACATCAACTGTCCTGCCCTTACACACCCGAGCAAAATGGGTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Retrotran_gag_2 gag_pre-integrs

Protein Analysis

490

Amino Acids

53.74

Weight (kDa)

8.99

Isoelectric Point (pI)

52.86

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0006436)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G21280
fragaria_vesca	FvH4_3g37931 FvH4_3g37931 FvH4_3g37931
malus_domestica	MD01G1094300.v1.1 MD02G1156200.v1.1 MD10G1309400.v1.1 MD14G1005300.v1.1
pyrus_communis	pycom02g16670 pycom03g10030 pycom04g21390 pycom05g29420 pycom07g08570 pycom08g06430 pycom15g03080 pycom15g21690
rosa_chinensis	RchiOBHm_Chr4g0394011 RchiOBHm_Chr4g0436631
rosa_multiflora	Rmu_sc0002646.1_g000018 Rmu_sc0004135.1_g000007
rosa_roxburghii	Rroxscaffold_2G00099130
rosa_samantha	Rh1AG086000 Rh2BG003200 Rh5DG450100 Rh7AG095400
rosa_wichuraiana	Rw1G012660

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	566
AccII	CGCG	3 cut(s)	14, 535, 1098
AciI	CCGC	5 cut(s)	14, 37, 197, 204, 734
AclWI	GGATC	3 cut(s)	534, 1012, 1025
AcoI	YGGCCR	1 cut(s)	682
AcsI	RAATTY	7 cut(s)	632, 697, 765, 843, 872, 1280, 1401
AcuI	CTGAAG	1 cut(s)	891
AfaI	GTAC	2 cut(s)	823, 1149
AfiI	CCNNNNNNNGG	2 cut(s)	135, 1014
AflIII	ACRYGT	1 cut(s)	1096
AgsI	TTSAA	4 cut(s)	343, 1052, 1213, 1334
AhlI	ACTAGT	1 cut(s)	509
AjnI	CCWGG	3 cut(s)	706, 972, 1020
AloI	GAACNNNNNNTCC	2 cut(s)	881, 913
AluBI	AGCT	6 cut(s)	50, 117, 126, 278, 521, 1127
AluI	AGCT	6 cut(s)	50, 117, 126, 278, 521, 1127
Alw21I	GWGCWC	1 cut(s)	755
Alw26I	GTCTC	3 cut(s)	353, 429, 1163
AlwI	GGATC	3 cut(s)	534, 1012, 1025
AlwNI	CAGNNNCTG	1 cut(s)	1250
Ama87I	CYCGRG	1 cut(s)	1453
AoxI	GGCC	1 cut(s)	682
ApeKI	GCWGC	3 cut(s)	34, 296, 1127
ApoI	RAATTY	7 cut(s)	632, 697, 765, 843, 872, 1280, 1401
Asp700I	GAANNNNTTC	1 cut(s)	1338
AspLEI	GCGC	1 cut(s)	14
AspS9I	GGNCC	1 cut(s)	1358
AsuHPI	GGTGA	2 cut(s)	75, 1172
AsuII	TTCGAA	1 cut(s)	1398
AvaI	CYCGRG	1 cut(s)	1453
AvaII	GGWCC	1 cut(s)	1358
BalI	TGGCCA	1 cut(s)	684
BamHI	GGATCC	1 cut(s)	1017
BauI	CACGAG	1 cut(s)	279
Bbv12I	GWGCWC	1 cut(s)	755
BbvCI	CCTCAGC	2 cut(s)	438, 522
BbvI	GCAGC	3 cut(s)	46, 283, 1114
BccI	CCATC	3 cut(s)	610, 943, 1376
BcgI	CGANNNNNNTGC	6 cut(s)	13, 47, 241, 275, 904, 938
BciT130I	CCWGG	3 cut(s)	708, 974, 1022
BciVI	GTATCC	1 cut(s)	1086
BcoDI	GTCTC	3 cut(s)	353, 429, 1163
BcuI	ACTAGT	1 cut(s)	509
BfaI	CTAG	3 cut(s)	95, 510, 1155
BfmI	CTRYAG	1 cut(s)	607
BfuI	GTATCC	1 cut(s)	1086
BglII	AGATCT	1 cut(s)	415
BisI	GCNGC	4 cut(s)	35, 197, 297, 1128
BlsI	GCNGC	4 cut(s)	36, 198, 298, 1129
BmcAI	AGTACT	1 cut(s)	823
Bme1390I	CCNGG	3 cut(s)	708, 974, 1022
Bme18I	GGWCC	1 cut(s)	1358
BmeT110I	CYCGRG	1 cut(s)	1453
BmgT120I	GGNCC	1 cut(s)	1358
BmiI	GGNNCC	3 cut(s)	153, 1019, 1359
BmrFI	CCNGG	3 cut(s)	708, 974, 1022
BmsI	GCATC	2 cut(s)	991, 1430
BplI	GAGNNNNNCTC	2 cut(s)	34, 66
Bpu10I	CCTNAGC	2 cut(s)	438, 522
Bpu14I	TTCGAA	1 cut(s)	1398
BpuEI	CTTGAG	2 cut(s)	36, 1107
BsaI	GGTCTC	2 cut(s)	353, 429
BsaJI	CCNNGG	1 cut(s)	447
BsaWI	WCCGGW	1 cut(s)	420
Bsc4I	CCNNNNNNNGG	2 cut(s)	135, 1014
Bse1I	ACTGG	1 cut(s)	685
Bse3DI	GCAATG	2 cut(s)	864, 927
BseBI	CCWGG	3 cut(s)	708, 974, 1022
BseDI	CCNNGG	1 cut(s)	447
BseGI	GGATG	2 cut(s)	602, 643
BseLI	CCNNNNNNNGG	2 cut(s)	135, 1014
BseMI	GCAATG	2 cut(s)	864, 927
BseMII	CTCAG	5 cut(s)	429, 440, 513, 575, 822
BseNI	ACTGG	1 cut(s)	685
BseRI	GAGGAG	3 cut(s)	64, 206, 343
BseXI	GCAGC	3 cut(s)	46, 283, 1114
BseYI	CCCAGC	1 cut(s)	299
BsgI	GTGCAG	1 cut(s)	53
Bsh1236I	CGCG	3 cut(s)	14, 535, 1098
BshFI	GGCC	1 cut(s)	684
BsiHKAI	GWGCWC	1 cut(s)	755
BsiHKCI	CYCGRG	1 cut(s)	1453
BsiSI	CCGG	1 cut(s)	421
BslI	CCNNNNNNNGG	2 cut(s)	135, 1014
BsmAI	GTCTC	3 cut(s)	353, 429, 1163
BsnI	GGCC	1 cut(s)	684
Bso31I	GGTCTC	2 cut(s)	353, 429
BsoBI	CYCGRG	1 cut(s)	1453
Bsp119I	TTCGAA	1 cut(s)	1398
Bsp1286I	GDGCHC	1 cut(s)	755
Bsp143I	GATC	6 cut(s)	252, 374, 415, 526, 1017, 1197
Bsp19I	CCATGG	1 cut(s)	447
BspACI	CCGC	5 cut(s)	14, 37, 197, 204, 734
BspANI	GGCC	1 cut(s)	684
BspCNI	CTCAG	5 cut(s)	430, 439, 514, 574, 823
BspFNI	CGCG	3 cut(s)	14, 535, 1098
BspLI	GGNNCC	3 cut(s)	153, 1019, 1359
BspPI	GGATC	3 cut(s)	534, 1012, 1025
BspT104I	TTCGAA	1 cut(s)	1398
BspTNI	GGTCTC	2 cut(s)	353, 429
BsrDI	GCAATG	2 cut(s)	864, 927
BsrI	ACTGG	1 cut(s)	685
BssECI	CCNNGG	1 cut(s)	447
BssMI	GATC	6 cut(s)	252, 374, 415, 526, 1017, 1197
BssSI	CACGAG	1 cut(s)	279
BssT1I	CCWWGG	1 cut(s)	447
Bst2BI	CACGAG	1 cut(s)	279
Bst2UI	CCWGG	3 cut(s)	708, 974, 1022
Bst4CI	ACNGT	5 cut(s)	826, 958, 969, 1346, 1436
BstBI	TTCGAA	1 cut(s)	1398
BstC8I	GCNNGC	2 cut(s)	25, 1096
BstDEI	CTNAG	5 cut(s)	426, 438, 522, 561, 831
BstDSI	CCRYGG	1 cut(s)	447
BstEII	GGTNACC	1 cut(s)	1178
BstF5I	GGATG	2 cut(s)	602, 643
BstFNI	CGCG	3 cut(s)	14, 535, 1098
BstHHI	GCGC	1 cut(s)	14
BstKTI	GATC	6 cut(s)	255, 377, 418, 529, 1020, 1200
BstMAI	GTCTC	3 cut(s)	353, 429, 1163
BstMBI	GATC	6 cut(s)	252, 374, 415, 526, 1017, 1197
BstMWI	GCNNNNNNNGC	4 cut(s)	20, 123, 443, 491
BstNI	CCWGG	3 cut(s)	708, 974, 1022
BstNSI	RCATGY	1 cut(s)	929
BstPI	GGTNACC	1 cut(s)	1178
BstSCI	CCNGG	3 cut(s)	706, 972, 1020
BstSFI	CTRYAG	1 cut(s)	607
BstUI	CGCG	3 cut(s)	14, 535, 1098
BstV1I	GCAGC	3 cut(s)	46, 283, 1114
BstX2I	RGATCY	2 cut(s)	415, 1017
BstYI	RGATCY	2 cut(s)	415, 1017
BsuI	GTATCC	1 cut(s)	1086
BsuRI	GGCC	1 cut(s)	684
BtgI	CCRYGG	1 cut(s)	447
BtgZI	GCGATG	1 cut(s)	921
BtsCI	GGATG	2 cut(s)	602, 643
BtsIMutI	CAGTG	3 cut(s)	954, 1251, 1351
Cac8I	GCNNGC	2 cut(s)	25, 1096
CaiI	CAGNNNCTG	1 cut(s)	1250
CfoI	GCGC	1 cut(s)	14
Cfr13I	GGNCC	1 cut(s)	1358
Csp6I	GTAC	2 cut(s)	822, 1148
CviAII	CATG	3 cut(s)	409, 448, 926
CviQI	GTAC	2 cut(s)	822, 1148
DdeI	CTNAG	5 cut(s)	426, 438, 522, 561, 831
DpnI	GATC	6 cut(s)	254, 376, 417, 528, 1019, 1199
DpnII	GATC	6 cut(s)	252, 374, 415, 526, 1017, 1197
EaeI	YGGCCR	1 cut(s)	682
EciI	GGCGGA	1 cut(s)	193
Eco130I	CCWWGG	1 cut(s)	447
Eco31I	GGTCTC	2 cut(s)	353, 429
Eco47I	GGWCC	1 cut(s)	1358
Eco57I	CTGAAG	1 cut(s)	891
Eco88I	CYCGRG	1 cut(s)	1453
Eco91I	GGTNACC	1 cut(s)	1178
EcoO109I	RGGNCCY	1 cut(s)	1358
EcoO65I	GGTNACC	1 cut(s)	1178
EcoRI	GAATTC	1 cut(s)	697
EcoRII	CCWGG	3 cut(s)	706, 972, 1020
EcoT14I	CCWWGG	1 cut(s)	447
EcoT22I	ATGCAT	1 cut(s)	927
ErhI	CCWWGG	1 cut(s)	447
FaeI	CATG	3 cut(s)	412, 451, 929
FatI	CATG	3 cut(s)	408, 447, 925
FblI	GTMKAC	1 cut(s)	566
Fnu4HI	GCNGC	4 cut(s)	35, 197, 297, 1128
FokI	GGATG	2 cut(s)	589, 630
Fsp4HI	GCNGC	4 cut(s)	35, 197, 297, 1128
FspBI	CTAG	3 cut(s)	95, 510, 1155
GlaI	GCGC	1 cut(s)	13
GluI	GCNGC	4 cut(s)	35, 197, 297, 1128
GsaI	CCCAGC	1 cut(s)	303
HaeIII	GGCC	1 cut(s)	684
HapII	CCGG	1 cut(s)	421
HhaI	GCGC	1 cut(s)	14
Hin1II	CATG	3 cut(s)	412, 451, 929
Hin6I	GCGC	1 cut(s)	12
HinP1I	GCGC	1 cut(s)	12
HinfI	GANTC	5 cut(s)	91, 242, 859, 1042, 1241
HpaII	CCGG	1 cut(s)	421
HphI	GGTGA	2 cut(s)	75, 1172
Hpy166II	GTNNAC	2 cut(s)	567, 954
Hpy188I	TCNGA	6 cut(s)	90, 175, 358, 465, 832, 915
Hpy188III	TCNNGA	6 cut(s)	53, 95, 281, 392, 886, 1271
Hpy8I	GTNNAC	2 cut(s)	567, 954
HpyAV	CCTTC	6 cut(s)	597, 915, 1161, 1268, 1371, 1383
HpyCH4III	ACNGT	5 cut(s)	826, 958, 969, 1346, 1436
HpyCH4IV	ACGT	2 cut(s)	265, 569
HpyF10VI	GCNNNNNNNGC	4 cut(s)	20, 123, 443, 491
HpyF3I	CTNAG	5 cut(s)	426, 438, 522, 561, 831
HpySE526I	ACGT	2 cut(s)	265, 569
Hsp92II	CATG	3 cut(s)	412, 451, 929
HspAI	GCGC	1 cut(s)	12
Kzo9I	GATC	6 cut(s)	252, 374, 415, 526, 1017, 1197
LmnI	GCTCC	4 cut(s)	114, 131, 709, 796
Lsp1109I	GCAGC	3 cut(s)	46, 283, 1114
LweI	GCATC	2 cut(s)	991, 1430
MaeI	CTAG	3 cut(s)	95, 510, 1155
MaeII	ACGT	2 cut(s)	265, 569
MaeIII	GTNAC	3 cut(s)	429, 1030, 1178
MalI	GATC	6 cut(s)	254, 376, 417, 528, 1019, 1199
MboI	GATC	6 cut(s)	252, 374, 415, 526, 1017, 1197
MboII	GAAGA	5 cut(s)	549, 865, 868, 1104, 1225
MfeI	CAATTG	1 cut(s)	378
MflI	RGATCY	2 cut(s)	415, 1017
MhlI	GDGCHC	1 cut(s)	755
MlsI	TGGCCA	1 cut(s)	684
MluI	ACGCGT	1 cut(s)	1096
MluNI	TGGCCA	1 cut(s)	684
MlyI	GAGTC	1 cut(s)	85
MmeI	TCCRAC	3 cut(s)	246, 938, 1391
Mox20I	TGGCCA	1 cut(s)	684
Mph1103I	ATGCAT	1 cut(s)	927
MroXI	GAANNNNTTC	1 cut(s)	1338
MscI	TGGCCA	1 cut(s)	684
MseI	TTAA	5 cut(s)	210, 270, 597, 1205, 1302
MslI	CAYNNNNRTG	1 cut(s)	1347
Msp20I	TGGCCA	1 cut(s)	684
MspA1I	CMGCKG	1 cut(s)	37
MspI	CCGG	1 cut(s)	421
MspR9I	CCNGG	3 cut(s)	708, 974, 1022
MunI	CAATTG	1 cut(s)	378
MvaI	CCWGG	3 cut(s)	708, 974, 1022
MvnI	CGCG	3 cut(s)	14, 535, 1098
MwoI	GCNNNNNNNGC	4 cut(s)	20, 123, 443, 491
NcoI	CCATGG	1 cut(s)	447
NdeII	GATC	6 cut(s)	252, 374, 415, 526, 1017, 1197
NlaIII	CATG	3 cut(s)	412, 451, 929
NlaIV	GGNNCC	3 cut(s)	153, 1019, 1359
NmuCI	GTSAC	2 cut(s)	1030, 1178
NsiI	ATGCAT	1 cut(s)	927
NspI	RCATGY	1 cut(s)	929
NspV	TTCGAA	1 cut(s)	1398
PcsI	WCGNNNNNNNCGW	1 cut(s)	575
PdmI	GAANNNNTTC	1 cut(s)	1338
PfeI	GAWTC	4 cut(s)	242, 859, 1042, 1241
PflFI	GACNNNGTC	1 cut(s)	1028
PfoI	TCCNGGA	1 cut(s)	1020
PkrI	GCNGC	4 cut(s)	36, 198, 298, 1129
PleI	GAGTC	1 cut(s)	85
PpsI	GAGTC	1 cut(s)	85
PpuMI	RGGWCCY	1 cut(s)	1358
Psp5II	RGGWCCY	1 cut(s)	1358
Psp6I	CCWGG	3 cut(s)	706, 972, 1020
PspEI	GGTNACC	1 cut(s)	1178
PspFI	CCCAGC	1 cut(s)	299
PspGI	CCWGG	3 cut(s)	706, 972, 1020
PspN4I	GGNNCC	3 cut(s)	153, 1019, 1359
PspPI	GGNCC	1 cut(s)	1358
PspPPI	RGGWCCY	1 cut(s)	1358
PstNI	CAGNNNCTG	1 cut(s)	1250
PsuI	RGATCY	2 cut(s)	415, 1017
PsyI	GACNNNGTC	1 cut(s)	1028
RsaI	GTAC	2 cut(s)	823, 1149
RsaNI	GTAC	2 cut(s)	822, 1148
RseI	CAYNNNNRTG	1 cut(s)	1347
SaqAI	TTAA	5 cut(s)	210, 270, 597, 1205, 1302
SatI	GCNGC	4 cut(s)	35, 197, 297, 1128
Sau3AI	GATC	6 cut(s)	252, 374, 415, 526, 1017, 1197
Sau96I	GGNCC	1 cut(s)	1358
ScaI	AGTACT	1 cut(s)	823
SchI	GAGTC	1 cut(s)	85
ScrFI	CCNGG	3 cut(s)	708, 974, 1022
SduI	GDGCHC	1 cut(s)	755
SfaNI	GCATC	2 cut(s)	991, 1430
SfcI	CTRYAG	1 cut(s)	607
SfuI	TTCGAA	1 cut(s)	1398
SinI	GGWCC	1 cut(s)	1358
SmiMI	CAYNNNNRTG	1 cut(s)	1347
SmlI	CTYRAG	2 cut(s)	51, 1122
SmoI	CTYRAG	2 cut(s)	51, 1122
SpeI	ACTAGT	1 cut(s)	509
SsiI	CCGC	5 cut(s)	14, 37, 197, 204, 734
SspMI	CTAG	3 cut(s)	95, 510, 1155
StyD4I	CCNGG	3 cut(s)	706, 972, 1020
StyI	CCWWGG	1 cut(s)	447
TaaI	ACNGT	5 cut(s)	826, 958, 969, 1346, 1436
TaiI	ACGT	2 cut(s)	268, 572
TaqI	TCGA	6 cut(s)	251, 385, 496, 749, 1171, 1398
TatI	WGTACW	1 cut(s)	821
TauI	GCSGC	1 cut(s)	199
TfiI	GAWTC	4 cut(s)	242, 859, 1042, 1241
Tru1I	TTAA	5 cut(s)	210, 270, 597, 1205, 1302
Tru9I	TTAA	5 cut(s)	210, 270, 597, 1205, 1302
TscAI	CASTG	3 cut(s)	961, 1251, 1351
TseFI	GTSAC	2 cut(s)	1030, 1178
TseI	GCWGC	3 cut(s)	34, 296, 1127
Tsp45I	GTSAC	2 cut(s)	1030, 1178
TspDTI	ATGAA	1 cut(s)	425
TspRI	CASTG	3 cut(s)	961, 1251, 1351
Tth111I	GACNNNGTC	1 cut(s)	1028
VpaK11BI	GGWCC	1 cut(s)	1358
XapI	RAATTY	7 cut(s)	632, 697, 765, 843, 872, 1280, 1401
XbaI	TCTAGA	1 cut(s)	94
XceI	RCATGY	1 cut(s)	929
XmiI	GTMKAC	1 cut(s)	566
XmnI	GAANNNNTTC	1 cut(s)	1338
XspI	CTAG	3 cut(s)	95, 510, 1155
ZrmI	AGTACT	1 cut(s)	823
Zsp2I	ATGCAT	1 cut(s)	927

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.