Retrotransposon gag protein
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| Species | Orthologous Gene IDs |
|---|---|
| arabidopsis_thaliana | AT1G21280 |
| fragaria_vesca | FvH4_3g37931 FvH4_3g37931 FvH4_3g37931 |
| malus_domestica | MD01G1094300.v1.1 MD02G1156200.v1.1 MD10G1309400.v1.1 MD14G1005300.v1.1 |
| pyrus_communis | pycom02g16670 pycom03g10030 pycom04g21390 pycom05g29420 pycom07g08570 pycom08g06430 pycom15g03080 pycom15g21690 |
| rosa_chinensis | RchiOBHm_Chr4g0394011 RchiOBHm_Chr4g0436631 |
| rosa_multiflora | Rmu_sc0002646.1_g000018 Rmu_sc0004135.1_g000007 |
| rosa_roxburghii | Rroxscaffold_2G00099130 |
| rosa_samantha | Rh1AG086000 Rh2BG003200 Rh5DG450100 Rh7AG095400 |
| rosa_wichuraiana | Rw1G012660 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AccI | GTMKAC | 1 cut(s) | 186 |
| AclWI | GGATC | 2 cut(s) | 10, 23 |
| AcsI | RAATTY | 1 cut(s) | 22 |
| AcuI | CTGAAG | 1 cut(s) | 51 |
| AcvI | CACGTG | 1 cut(s) | 125 |
| AfaI | GTAC | 1 cut(s) | 30 |
| AflIII | ACRYGT | 1 cut(s) | 124 |
| Alw21I | GWGCWC | 1 cut(s) | 159 |
| AlwI | GGATC | 2 cut(s) | 10, 23 |
| ApeKI | GCWGC | 2 cut(s) | 48, 71 |
| ApoI | RAATTY | 1 cut(s) | 22 |
| BamHI | GGATCC | 1 cut(s) | 15 |
| BbrPI | CACGTG | 1 cut(s) | 125 |
| BbsI | GAAGAC | 1 cut(s) | 42 |
| Bbv12I | GWGCWC | 1 cut(s) | 159 |
| BbvI | GCAGC | 2 cut(s) | 60, 83 |
| BisI | GCNGC | 2 cut(s) | 49, 72 |
| BlsI | GCNGC | 2 cut(s) | 50, 73 |
| BmiI | GGNNCC | 1 cut(s) | 17 |
| BpiI | GAAGAC | 1 cut(s) | 42 |
| BpuEI | CTTGAG | 1 cut(s) | 93 |
| Bsa29I | ATCGAT | 1 cut(s) | 176 |
| BsaAI | YACGTR | 1 cut(s) | 125 |
| Bse3DI | GCAATG | 1 cut(s) | 39 |
| BseCI | ATCGAT | 1 cut(s) | 176 |
| BseMI | GCAATG | 1 cut(s) | 39 |
| BseMII | CTCAG | 1 cut(s) | 195 |
| BseXI | GCAGC | 2 cut(s) | 60, 83 |
| BshVI | ATCGAT | 1 cut(s) | 176 |
| BsiHKAI | GWGCWC | 1 cut(s) | 159 |
| Bsp1286I | GDGCHC | 1 cut(s) | 159 |
| Bsp1407I | TGTACA | 1 cut(s) | 28 |
| Bsp143I | GATC | 3 cut(s) | 15, 97, 177 |
| BspCNI | CTCAG | 1 cut(s) | 194 |
| BspDI | ATCGAT | 1 cut(s) | 176 |
| BspLI | GGNNCC | 1 cut(s) | 17 |
| BspPI | GGATC | 2 cut(s) | 10, 23 |
| BsrDI | GCAATG | 1 cut(s) | 39 |
| BsrGI | TGTACA | 1 cut(s) | 28 |
| BssMI | GATC | 3 cut(s) | 15, 97, 177 |
| BstAUI | TGTACA | 1 cut(s) | 28 |
| BstBAI | YACGTR | 1 cut(s) | 125 |
| BstC8I | GCNNGC | 1 cut(s) | 46 |
| BstDEI | CTNAG | 1 cut(s) | 181 |
| BstKTI | GATC | 3 cut(s) | 18, 100, 180 |
| BstMBI | GATC | 3 cut(s) | 15, 97, 177 |
| BstV1I | GCAGC | 2 cut(s) | 60, 83 |
| BstV2I | GAAGAC | 1 cut(s) | 42 |
| BstX2I | RGATCY | 1 cut(s) | 15 |
| BstYI | RGATCY | 1 cut(s) | 15 |
| Bsu15I | ATCGAT | 1 cut(s) | 176 |
| BsuTUI | ATCGAT | 1 cut(s) | 176 |
| Cac8I | GCNNGC | 1 cut(s) | 46 |
| ClaI | ATCGAT | 1 cut(s) | 176 |
| Csp6I | GTAC | 1 cut(s) | 29 |
| CviAII | CATG | 2 cut(s) | 12, 32 |
| CviJI | RGCY | 1 cut(s) | 86 |
| CviKI_1 | RGCY | 1 cut(s) | 86 |
| CviQI | GTAC | 1 cut(s) | 29 |
| DdeI | CTNAG | 1 cut(s) | 181 |
| DpnI | GATC | 3 cut(s) | 17, 99, 179 |
| DpnII | GATC | 3 cut(s) | 15, 97, 177 |
| Eco57I | CTGAAG | 1 cut(s) | 51 |
| Eco72I | CACGTG | 1 cut(s) | 125 |
| EcoRI | GAATTC | 1 cut(s) | 22 |
| FaeI | CATG | 2 cut(s) | 15, 35 |
| FaiI | YATR | 2 cut(s) | 13, 33 |
| FatI | CATG | 2 cut(s) | 11, 31 |
| FblI | GTMKAC | 1 cut(s) | 186 |
| Fnu4HI | GCNGC | 2 cut(s) | 49, 72 |
| Fsp4HI | GCNGC | 2 cut(s) | 49, 72 |
| FspEI | CC | 8 cut(s) | 32, 67, 68, 70, 96, 97, 146, 149 |
| GluI | GCNGC | 2 cut(s) | 49, 72 |
| Hin1II | CATG | 2 cut(s) | 15, 35 |
| HinfI | GANTC | 1 cut(s) | 119 |
| Hpy166II | GTNNAC | 2 cut(s) | 130, 187 |
| Hpy188III | TCNNGA | 1 cut(s) | 19 |
| Hpy8I | GTNNAC | 2 cut(s) | 130, 187 |
| HpyCH4IV | ACGT | 1 cut(s) | 124 |
| HpyCH4V | TGCA | 1 cut(s) | 44 |
| HpyF3I | CTNAG | 1 cut(s) | 181 |
| HpySE526I | ACGT | 1 cut(s) | 124 |
| Hsp92II | CATG | 2 cut(s) | 15, 35 |
| Kzo9I | GATC | 3 cut(s) | 15, 97, 177 |
| LmnI | GCTCC | 1 cut(s) | 166 |
| LpnPI | CCDG | 2 cut(s) | 32, 149 |
| Lsp1109I | GCAGC | 2 cut(s) | 60, 83 |
| MaeII | ACGT | 1 cut(s) | 124 |
| MalI | GATC | 3 cut(s) | 17, 99, 179 |
| MboI | GATC | 3 cut(s) | 15, 97, 177 |
| MboII | GAAGA | 1 cut(s) | 47 |
| MflI | RGATCY | 1 cut(s) | 15 |
| MhlI | GDGCHC | 1 cut(s) | 159 |
| MluCI | AATT | 3 cut(s) | 22, 135, 147 |
| MseI | TTAA | 1 cut(s) | 138 |
| NdeII | GATC | 3 cut(s) | 15, 97, 177 |
| NlaIII | CATG | 2 cut(s) | 15, 35 |
| NlaIV | GGNNCC | 1 cut(s) | 17 |
| PfeI | GAWTC | 1 cut(s) | 119 |
| PkrI | GCNGC | 2 cut(s) | 50, 73 |
| PmaCI | CACGTG | 1 cut(s) | 125 |
| PmlI | CACGTG | 1 cut(s) | 125 |
| Ppu21I | YACGTR | 1 cut(s) | 125 |
| PspCI | CACGTG | 1 cut(s) | 125 |
| PspN4I | GGNNCC | 1 cut(s) | 17 |
| PsuI | RGATCY | 1 cut(s) | 15 |
| RsaI | GTAC | 1 cut(s) | 30 |
| RsaNI | GTAC | 1 cut(s) | 29 |
| SaqAI | TTAA | 1 cut(s) | 138 |
| SatI | GCNGC | 2 cut(s) | 49, 72 |
| Sau3AI | GATC | 3 cut(s) | 15, 97, 177 |
| SduI | GDGCHC | 1 cut(s) | 159 |
| SetI | ASST | 1 cut(s) | 127 |
| SmlI | CTYRAG | 1 cut(s) | 108 |
| SmoI | CTYRAG | 1 cut(s) | 108 |
| Sse9I | AATT | 3 cut(s) | 22, 135, 147 |
| TaiI | ACGT | 1 cut(s) | 127 |
| TaqI | TCGA | 1 cut(s) | 176 |
| TasI | AATT | 3 cut(s) | 22, 135, 147 |
| TatI | WGTACW | 1 cut(s) | 28 |
| TfiI | GAWTC | 1 cut(s) | 119 |
| Tru1I | TTAA | 1 cut(s) | 138 |
| Tru9I | TTAA | 1 cut(s) | 138 |
| TseI | GCWGC | 2 cut(s) | 48, 71 |
| TspDTI | ATGAA | 1 cut(s) | 48 |
| XapI | RAATTY | 1 cut(s) | 22 |
| XmiI | GTMKAC | 1 cut(s) | 186 |