pycom15g03080

Retrotransposon gag protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr15
OG0006436
Physical Location & Seq
Forward (+)
1901566 .. 1901919
354 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom15g03080.1

Sequence Viewer

Length: 354 bp
ATGCGACTTAGCTTGAGCACGAAGAACAAACTCAGTTTGGTTAATGGAACCATTGAACCTGCGTCTGAAACTGTCAAGCAGTTTACGTCATGGCAAAGATGCAACAACATGGTCCTTGCTTGGATTCTGAACTCCGTACATGATGACATCGCGACCAGCGTTTCTTATTACACATCAGCGGCAGATGTATGGGCAGACTTGCGAAATCGCTTCTCACAGGGAAACGATTCGCGCATCTACCAGATCCAAATAGAAATCACCAAACATAGACAGGAGCAACAATCAATCTCAGTTTACTACACGAAACATTACCATCCTACAATGAATCTCCAACCTGCACTTGTGGGGGATTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Retrotran_gag_2 Retrotran_gag_3 Retrotrans_gag gag_pre-integrs

Protein Analysis

118

Amino Acids

13.46

Weight (kDa)

7.9

Isoelectric Point (pI)

49.88

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Retrotran_gag_2 PF14223 1 - 82 2.1e-07 gag-polypeptide of LTR copia-type
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 2 cut(s) 67, 343
AccII CGCG 2 cut(s) 152, 232
AciI CCGC 1 cut(s) 179
AclWI GGATC 1 cut(s) 238
AfaI GTAC 1 cut(s) 138
AgsI TTSAA 1 cut(s) 56
AluBI AGCT 1 cut(s) 12
AluI AGCT 1 cut(s) 12
Alw21I GWGCWC 1 cut(s) 20
AlwI GGATC 1 cut(s) 238
Asp700I GAANNNNTTC 1 cut(s) 226
AspLEI GCGC 1 cut(s) 234
AspS9I GGNCC 1 cut(s) 112
AsuHPI GGTGA 1 cut(s) 250
AvaII GGWCC 1 cut(s) 112
Bbv12I GWGCWC 1 cut(s) 20
BccI CCATC 1 cut(s) 321
BfuAI ACCTGC 2 cut(s) 67, 343
BisI GCNGC 1 cut(s) 180
BlsI GCNGC 1 cut(s) 181
Bme18I GGWCC 1 cut(s) 112
BmgT120I GGNCC 1 cut(s) 112
BmiI GGNNCC 1 cut(s) 49
BmsI GCATC 2 cut(s) 89, 243
BpuEI CTTGAG 1 cut(s) 34
BseGI GGATG 1 cut(s) 313
BseMII CTCAG 2 cut(s) 46, 303
BsgI GTGCAG 1 cut(s) 321
Bsh1236I CGCG 2 cut(s) 152, 232
BsiHKAI GWGCWC 1 cut(s) 20
Bsp1286I GDGCHC 1 cut(s) 20
Bsp143I GATC 1 cut(s) 243
Bsp68I TCGCGA 1 cut(s) 152
BspACI CCGC 1 cut(s) 179
BspCNI CTCAG 2 cut(s) 45, 302
BspFNI CGCG 2 cut(s) 152, 232
BspLI GGNNCC 1 cut(s) 49
BspMI ACCTGC 2 cut(s) 67, 343
BspPI GGATC 1 cut(s) 238
BssMI GATC 1 cut(s) 243
Bst4CI ACNGT 1 cut(s) 73
BstDEI CTNAG 3 cut(s) 8, 32, 289
BstF5I GGATG 1 cut(s) 313
BstFNI CGCG 2 cut(s) 152, 232
BstHHI GCGC 1 cut(s) 234
BstKTI GATC 1 cut(s) 246
BstMBI GATC 1 cut(s) 243
BstUI CGCG 2 cut(s) 152, 232
BstX2I RGATCY 1 cut(s) 243
BstYI RGATCY 1 cut(s) 243
BtgZI GCGATG 1 cut(s) 133
BtsCI GGATG 1 cut(s) 313
BtuMI TCGCGA 1 cut(s) 152
BveI ACCTGC 2 cut(s) 67, 343
CfoI GCGC 1 cut(s) 234
Cfr13I GGNCC 1 cut(s) 112
CseI GACGC 1 cut(s) 51
Csp6I GTAC 1 cut(s) 137
CviAII CATG 3 cut(s) 90, 109, 140
CviJI RGCY 1 cut(s) 12
CviKI_1 RGCY 1 cut(s) 12
CviQI GTAC 1 cut(s) 137
DdeI CTNAG 3 cut(s) 8, 32, 289
DpnI GATC 1 cut(s) 245
DpnII GATC 1 cut(s) 243
Eco47I GGWCC 1 cut(s) 112
FaeI CATG 3 cut(s) 93, 112, 143
FaiI YATR 5 cut(s) 91, 110, 141, 190, 267
FatI CATG 3 cut(s) 89, 108, 139
Fnu4HI GCNGC 1 cut(s) 180
FokI GGATG 1 cut(s) 300
Fsp4HI GCNGC 1 cut(s) 180
GlaI GCGC 1 cut(s) 233
GluI GCNGC 1 cut(s) 180
HgaI GACGC 1 cut(s) 51
HhaI GCGC 1 cut(s) 234
Hin1II CATG 3 cut(s) 93, 112, 143
Hin6I GCGC 1 cut(s) 232
HinP1I GCGC 1 cut(s) 232
HinfI GANTC 3 cut(s) 124, 227, 325
HphI GGTGA 1 cut(s) 250
Hpy166II GTNNAC 2 cut(s) 84, 295
Hpy188I TCNGA 2 cut(s) 67, 129
Hpy188III TCNNGA 1 cut(s) 151
Hpy8I GTNNAC 2 cut(s) 84, 295
HpyCH4III ACNGT 1 cut(s) 73
HpyCH4IV ACGT 1 cut(s) 86
HpyCH4V TGCA 2 cut(s) 102, 338
HpyF3I CTNAG 3 cut(s) 8, 32, 289
HpySE526I ACGT 1 cut(s) 86
Hsp92II CATG 3 cut(s) 93, 112, 143
HspAI GCGC 1 cut(s) 232
Kzo9I GATC 1 cut(s) 243
LmnI GCTCC 1 cut(s) 274
LpnPI CCDG 6 cut(s) 72, 169, 203, 254, 257, 348
LweI GCATC 2 cut(s) 89, 243
MaeII ACGT 1 cut(s) 86
MalI GATC 1 cut(s) 245
MboI GATC 1 cut(s) 243
MboII GAAGA 1 cut(s) 34
MflI RGATCY 1 cut(s) 243
MhlI GDGCHC 1 cut(s) 20
MroXI GAANNNNTTC 1 cut(s) 226
MseI TTAA 1 cut(s) 42
MspA1I CMGCKG 1 cut(s) 179
MvnI CGCG 2 cut(s) 152, 232
NdeII GATC 1 cut(s) 243
NlaIII CATG 3 cut(s) 93, 112, 143
NlaIV GGNNCC 1 cut(s) 49
NruI TCGCGA 1 cut(s) 152
PcsI WCGNNNNNNNCGW 1 cut(s) 156
PdmI GAANNNNTTC 1 cut(s) 226
PfeI GAWTC 3 cut(s) 124, 227, 325
PkrI GCNGC 1 cut(s) 181
PspN4I GGNNCC 1 cut(s) 49
PspPI GGNCC 1 cut(s) 112
PsuI RGATCY 1 cut(s) 243
RruI TCGCGA 1 cut(s) 152
RsaI GTAC 1 cut(s) 138
RsaNI GTAC 1 cut(s) 137
SaqAI TTAA 1 cut(s) 42
SatI GCNGC 1 cut(s) 180
Sau3AI GATC 1 cut(s) 243
Sau96I GGNCC 1 cut(s) 112
SduI GDGCHC 1 cut(s) 20
SetI ASST 4 cut(s) 14, 61, 89, 337
SfaNI GCATC 2 cut(s) 89, 243
SinI GGWCC 1 cut(s) 112
SmlI CTYRAG 1 cut(s) 13
SmoI CTYRAG 1 cut(s) 13
SsiI CCGC 1 cut(s) 179
TaaI ACNGT 1 cut(s) 73
TaiI ACGT 1 cut(s) 89
TauI GCSGC 1 cut(s) 182
TfiI GAWTC 3 cut(s) 124, 227, 325
Tru1I TTAA 1 cut(s) 42
Tru9I TTAA 1 cut(s) 42
TspDTI ATGAA 1 cut(s) 338
TspGWI ACGGA 1 cut(s) 124
VpaK11BI GGWCC 1 cut(s) 112
XmnI GAANNNNTTC 1 cut(s) 226
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.