Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr7

Orthogroup ID

OG0006436

Physical Location & Seq

Genomic Coordinates Forward (+)

7866832 .. 7867878

Gene Structure 1047 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom07g08570.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 705 bp

ATGAGTCCCTGTGGTGCTTTGTATGTTAAGCTCATAAACTTAGCTCCTAAGTATACCTTATGTCTATTACCAATCCAGAAATACTCGTATAACGGACGATCAATCAAGCGAGCAATCAATAGGAGCAGAAACAAGCAACTCGTAGCAACAGCTCAACGAGAGGAATTGTTAATTTTGGGCGATAGATCTGTTTGGCCAACTGATCGGTCGTTTTTGCATGTTCCTTGTTTTTTGTTATGCGTTTTCAGAGTCTGTCTAGAGAGTAGGTTTTGGGGTTTTCATGAGATTCCTTTATTTCACTTGCTTGTTTTGTATTTGACTGTGACTCTATATAATGTTGTAACCTTAATTCGATCAATGAGAAGAAGAAACACAGACCTTGCATTTCTTTACATGGTACCAGAGTCCAACGTAGCCATGGGTGACAAATCAAAAACACAGTCACATGTAAAGTGGGAAAATCCAAACCACCCACTCTACCTTTACCATTCGGACCAGCCTGGTGCAGTGCTTGTACCGCAGCCATTGGTGGAAGATAATTATAGTACATGGGTTCAGTCCATGACAATTGATAGGAGCATATTTATGCGACTTAGTTTGCTTTTCTTTAAGCTTCTTTTGTGTGTTTTCAGGTTCATAAGATGTATTTGGCGAAAGGATGCATTTTGGAGCCTTTTGGAGCACTTTTGGGCACAAATTGGATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

235

Amino Acids

27.57

Weight (kDa)

9.57

Isoelectric Point (pI)

44.9

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0006436)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G21280
fragaria_vesca	FvH4_3g37931 FvH4_3g37931 FvH4_3g37931
malus_domestica	MD01G1094300.v1.1 MD02G1156200.v1.1 MD10G1309400.v1.1 MD14G1005300.v1.1
pyrus_communis	pycom02g16670 pycom03g10030 pycom04g21390 pycom05g29420 pycom07g08570 pycom08g06430 pycom15g03080 pycom15g21690
rosa_chinensis	RchiOBHm_Chr4g0394011 RchiOBHm_Chr4g0436631
rosa_multiflora	Rmu_sc0002646.1_g000018 Rmu_sc0004135.1_g000007
rosa_roxburghii	Rroxscaffold_2G00099130
rosa_samantha	Rh1AG086000 Rh2BG003200 Rh5DG450100 Rh7AG095400
rosa_wichuraiana	Rw1G012660

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	397
AccB1I	GGYRCC	1 cut(s)	397
AccI	GTMKAC	1 cut(s)	53
AciI	CCGC	1 cut(s)	518
AcoI	YGGCCR	1 cut(s)	194
AfaI	GTAC	3 cut(s)	399, 516, 547
AflIII	ACRYGT	1 cut(s)	445
AjnI	CCWGG	1 cut(s)	499
AluBI	AGCT	4 cut(s)	31, 44, 152, 613
AluI	AGCT	4 cut(s)	31, 44, 152, 613
Alw21I	GWGCWC	1 cut(s)	684
AlwNI	CAGNNNCTG	1 cut(s)	252
AoxI	GGCC	1 cut(s)	194
ApeKI	GCWGC	1 cut(s)	520
ArsI	GACNNNNNNTTYG	2 cut(s)	425, 457
Asp718I	GGTACC	1 cut(s)	397
AspS9I	GGNCC	1 cut(s)	493
AsuHPI	GGTGA	1 cut(s)	434
AvaII	GGWCC	1 cut(s)	493
BaeGI	GKGCMC	1 cut(s)	694
BaeI	ACNNNNGTAYC	2 cut(s)	389, 422
BalI	TGGCCA	1 cut(s)	196
BanI	GGYRCC	1 cut(s)	397
Bbv12I	GWGCWC	1 cut(s)	684
BbvI	GCAGC	1 cut(s)	532
BciT130I	CCWGG	1 cut(s)	501
BfaI	CTAG	1 cut(s)	257
BglII	AGATCT	1 cut(s)	185
BisI	GCNGC	1 cut(s)	521
BlsI	GCNGC	1 cut(s)	522
Bme1390I	CCNGG	1 cut(s)	501
Bme18I	GGWCC	1 cut(s)	493
BmgT120I	GGNCC	1 cut(s)	493
BmiI	GGNNCC	2 cut(s)	399, 671
BmrFI	CCNGG	1 cut(s)	501
BmsI	GCATC	1 cut(s)	649
BsaJI	CCNNGG	1 cut(s)	417
BseBI	CCWGG	1 cut(s)	501
BseDI	CCNNGG	1 cut(s)	417
BseGI	GGATG	1 cut(s)	664
BseSI	GKGCMC	1 cut(s)	694
BseXI	GCAGC	1 cut(s)	532
BsgI	GTGCAG	1 cut(s)	525
Bsh1285I	CGRYCG	1 cut(s)	209
BshFI	GGCC	1 cut(s)	196
BshNI	GGYRCC	1 cut(s)	397
BsiEI	CGRYCG	1 cut(s)	209
BsiHKAI	GWGCWC	1 cut(s)	684
BsnI	GGCC	1 cut(s)	196
Bsp1286I	GDGCHC	2 cut(s)	684, 694
Bsp143I	GATC	4 cut(s)	98, 185, 202, 353
Bsp19I	CCATGG	1 cut(s)	417
BspACI	CCGC	1 cut(s)	518
BspANI	GGCC	1 cut(s)	196
BspHI	TCATGA	1 cut(s)	280
BspLI	GGNNCC	2 cut(s)	399, 671
BspT107I	GGYRCC	1 cut(s)	397
BssECI	CCNNGG	1 cut(s)	417
BssMI	GATC	4 cut(s)	98, 185, 202, 353
BssNAI	GTATAC	1 cut(s)	54
BssT1I	CCWWGG	1 cut(s)	417
Bst1107I	GTATAC	1 cut(s)	54
Bst2UI	CCWGG	1 cut(s)	501
Bst4CI	ACNGT	2 cut(s)	322, 441
BstC8I	GCNNGC	1 cut(s)	111
BstDEI	CTNAG	3 cut(s)	40, 48, 593
BstDSI	CCRYGG	1 cut(s)	417
BstF5I	GGATG	1 cut(s)	664
BstKTI	GATC	4 cut(s)	101, 188, 205, 356
BstMBI	GATC	4 cut(s)	98, 185, 202, 353
BstMCI	CGRYCG	1 cut(s)	209
BstMWI	GCNNNNNNNGC	1 cut(s)	517
BstNI	CCWGG	1 cut(s)	501
BstNSI	RCATGY	2 cut(s)	221, 449
BstSCI	CCNGG	1 cut(s)	499
BstSLI	GKGCMC	1 cut(s)	694
BstV1I	GCAGC	1 cut(s)	532
BstX2I	RGATCY	1 cut(s)	185
BstYI	RGATCY	1 cut(s)	185
BstZ17I	GTATAC	1 cut(s)	54
BsuRI	GGCC	1 cut(s)	196
BtgI	CCRYGG	1 cut(s)	417
BtsCI	GGATG	1 cut(s)	664
BtsI	GCAGTG	1 cut(s)	513
BtsIMutI	CAGTG	1 cut(s)	513
Cac8I	GCNNGC	1 cut(s)	111
CaiI	CAGNNNCTG	1 cut(s)	252
CciI	TCATGA	1 cut(s)	280
Cfr13I	GGNCC	1 cut(s)	493
Csp6I	GTAC	3 cut(s)	398, 515, 546
CviAII	CATG	7 cut(s)	218, 281, 394, 418, 446, 549, 562
CviJI	RGCY	9 cut(s)	31, 44, 152, 196, 416, 499, 523, 613, 672
CviKI_1	RGCY	9 cut(s)	31, 44, 152, 196, 416, 499, 523, 613, 672
CviQI	GTAC	3 cut(s)	398, 515, 546
DdeI	CTNAG	3 cut(s)	40, 48, 593
DpnI	GATC	4 cut(s)	100, 187, 204, 355
DpnII	GATC	4 cut(s)	98, 185, 202, 353
EaeI	YGGCCR	1 cut(s)	194
Eco130I	CCWWGG	1 cut(s)	417
Eco47I	GGWCC	1 cut(s)	493
EcoRII	CCWGG	1 cut(s)	499
EcoT14I	CCWWGG	1 cut(s)	417
EcoT22I	ATGCAT	1 cut(s)	664
ErhI	CCWWGG	1 cut(s)	417
FaeI	CATG	7 cut(s)	221, 284, 397, 421, 449, 552, 565
FalI	AAGNNNNNCTT	2 cut(s)	41, 73
FatI	CATG	7 cut(s)	217, 280, 393, 417, 445, 548, 561
FblI	GTMKAC	1 cut(s)	53
Fnu4HI	GCNGC	1 cut(s)	521
FokI	GGATG	1 cut(s)	671
Fsp4HI	GCNGC	1 cut(s)	521
FspBI	CTAG	1 cut(s)	257
GluI	GCNGC	1 cut(s)	521
HaeIII	GGCC	1 cut(s)	196
Hin1II	CATG	7 cut(s)	221, 284, 397, 421, 449, 552, 565
HindIII	AAGCTT	1 cut(s)	611
HinfI	GANTC	5 cut(s)	4, 249, 286, 325, 404
HphI	GGTGA	1 cut(s)	434
Hpy166II	GTNNAC	1 cut(s)	54
Hpy188I	TCNGA	2 cut(s)	248, 493
Hpy188III	TCNNGA	3 cut(s)	76, 257, 281
Hpy8I	GTNNAC	1 cut(s)	54
HpyCH4III	ACNGT	2 cut(s)	322, 441
HpyCH4IV	ACGT	1 cut(s)	411
HpyCH4V	TGCA	4 cut(s)	217, 383, 506, 662
HpyF10VI	GCNNNNNNNGC	1 cut(s)	517
HpyF3I	CTNAG	3 cut(s)	40, 48, 593
HpySE526I	ACGT	1 cut(s)	411
Hsp92II	CATG	7 cut(s)	221, 284, 397, 421, 449, 552, 565
KpnI	GGTACC	1 cut(s)	401
Kzo9I	GATC	4 cut(s)	98, 185, 202, 353
LmnI	GCTCC	5 cut(s)	49, 123, 576, 669, 679
LpnPI	CCDG	7 cut(s)	22, 89, 414, 486, 509, 513, 616
Lsp1109I	GCAGC	1 cut(s)	532
LweI	GCATC	1 cut(s)	649
MaeI	CTAG	1 cut(s)	257
MaeII	ACGT	1 cut(s)	411
MaeIII	GTNAC	4 cut(s)	322, 340, 422, 441
MalI	GATC	4 cut(s)	100, 187, 204, 355
MboI	GATC	4 cut(s)	98, 185, 202, 353
MboII	GAAGA	3 cut(s)	375, 378, 545
MfeI	CAATTG	1 cut(s)	567
MflI	RGATCY	1 cut(s)	185
MhlI	GDGCHC	2 cut(s)	684, 694
MlsI	TGGCCA	1 cut(s)	196
MluCI	AATT	6 cut(s)	164, 171, 348, 538, 567, 696
MluNI	TGGCCA	1 cut(s)	196
MlyI	GAGTC	4 cut(s)	13, 258, 319, 413
MmeI	TCCRAC	1 cut(s)	432
MnlI	CCTC	1 cut(s)	154
Mox20I	TGGCCA	1 cut(s)	196
Mph1103I	ATGCAT	1 cut(s)	664
MscI	TGGCCA	1 cut(s)	196
MseI	TTAA	4 cut(s)	27, 170, 347, 609
MslI	CAYNNNNRTG	1 cut(s)	584
Msp20I	TGGCCA	1 cut(s)	196
MspR9I	CCNGG	1 cut(s)	501
MunI	CAATTG	1 cut(s)	567
MvaI	CCWGG	1 cut(s)	501
MwoI	GCNNNNNNNGC	1 cut(s)	517
NcoI	CCATGG	1 cut(s)	417
NdeII	GATC	4 cut(s)	98, 185, 202, 353
NlaIII	CATG	7 cut(s)	221, 284, 397, 421, 449, 552, 565
NlaIV	GGNNCC	2 cut(s)	399, 671
NmuCI	GTSAC	3 cut(s)	322, 422, 441
NsiI	ATGCAT	1 cut(s)	664
NspI	RCATGY	2 cut(s)	221, 449
PagI	TCATGA	1 cut(s)	280
PciI	ACATGT	1 cut(s)	445
PfeI	GAWTC	1 cut(s)	286
PkrI	GCNGC	1 cut(s)	522
PleI	GAGTC	4 cut(s)	12, 257, 319, 412
PpsI	GAGTC	4 cut(s)	12, 257, 319, 412
PscI	ACATGT	1 cut(s)	445
Psp6I	CCWGG	1 cut(s)	499
PspGI	CCWGG	1 cut(s)	499
PspN4I	GGNNCC	2 cut(s)	399, 671
PspPI	GGNCC	1 cut(s)	493
PstNI	CAGNNNCTG	1 cut(s)	252
PsuI	RGATCY	1 cut(s)	185
RsaI	GTAC	3 cut(s)	399, 516, 547
RsaNI	GTAC	3 cut(s)	398, 515, 546
RseI	CAYNNNNRTG	1 cut(s)	584
SaqAI	TTAA	4 cut(s)	27, 170, 347, 609
SatI	GCNGC	1 cut(s)	521
Sau3AI	GATC	4 cut(s)	98, 185, 202, 353
Sau96I	GGNCC	1 cut(s)	493
SchI	GAGTC	4 cut(s)	13, 258, 319, 413
ScrFI	CCNGG	1 cut(s)	501
SduI	GDGCHC	2 cut(s)	684, 694
SfaNI	GCATC	1 cut(s)	649
SinI	GGWCC	1 cut(s)	493
SmiMI	CAYNNNNRTG	1 cut(s)	584
Sse9I	AATT	6 cut(s)	164, 171, 348, 538, 567, 696
SsiI	CCGC	1 cut(s)	518
SspMI	CTAG	1 cut(s)	257
StyD4I	CCNGG	1 cut(s)	499
StyI	CCWWGG	1 cut(s)	417
TaaI	ACNGT	2 cut(s)	322, 441
TaiI	ACGT	1 cut(s)	414
TaqI	TCGA	1 cut(s)	352
TaqII	GACCGA	1 cut(s)	195
TasI	AATT	6 cut(s)	164, 171, 348, 538, 567, 696
TatI	WGTACW	1 cut(s)	545
TfiI	GAWTC	1 cut(s)	286
Tru1I	TTAA	4 cut(s)	27, 170, 347, 609
Tru9I	TTAA	4 cut(s)	27, 170, 347, 609
TscAI	CASTG	1 cut(s)	513
TseFI	GTSAC	3 cut(s)	322, 422, 441
TseI	GCWGC	1 cut(s)	520
Tsp45I	GTSAC	3 cut(s)	322, 422, 441
TspDTI	ATGAA	2 cut(s)	269, 625
TspGWI	ACGGA	1 cut(s)	108
TspRI	CASTG	1 cut(s)	513
VpaK11BI	GGWCC	1 cut(s)	493
XbaI	TCTAGA	1 cut(s)	256
XceI	RCATGY	2 cut(s)	221, 449
XcmI	CCANNNNNNNNNTGG	1 cut(s)	415
XmiI	GTMKAC	1 cut(s)	53
XspI	CTAG	1 cut(s)	257
Zsp2I	ATGCAT	1 cut(s)	664

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.