FvH4_3g38300

GDP-mannose transporter

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb3
OG0008024
Physical Location & Seq
Forward (+)
32679779 .. 32683261
3483 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_3g38300.t1

Sequence Viewer

Length: 1119 bp
ATGTCGTCTGATTTCAAGTTAGAGGGAGTTAAAGGCCATGAAATTGAGGACCCAGAAGTTGGTTCGCCAAATGGAGTACATAAGATTCTTGCAGAACGAAGAACTATGACTCTCAGTGACAGGTTGTTCAGAGGGAATCGAGCAGGGCATGGCGACGCCGTCTCGTTTAGTCAAAGTGACGGAAATGAAAAGCATGGACATGGGCAAGCAAAGAAATCTGGACCTCTGTTGTCTGGGATATCATATTGCCTTTCGTCTTGCAGCATGATATTGCTGAATAAAGTTGTCTTATCCGGTTATAACTTTAATGCAGGAGTATCGTTGATGTTCTATCAAAATTTGATAACTACTGTAATTGTTGTATTCTTGGGCTTCTCTGGAGTTGCTCCTGTGGAAAAGCTCAATTGGAAACTGATTAAGGTCTGGATCCCTGTTAATGTAATCTTCATCGGCATGCTTGTATCAGGCATGTATAGTTTGAAATACGTAAATATTGCAATGGTGACCATTCTGAAGAATGTGACAAATATTTTAACAGCACTGGGAGAATTATATATGTTTCGGAAACACCAGAATCAGAAAGTGTGGACTGCCATGTTTCTGATGATTATCTCTGCTATCAGCAGTGGCATTACCGATATCTCCTTTGATACCGTAGGTTATGCTTGGCAATTTTCAAATTGCATACTAACAGCAAGCTACTCACTCACTCTACGTCGAGTCATGGATGAAGCAAAAAAGTATACAAGATCTGGATCTCTGAATGAAGTTTCGATGGTCTTGTTGAATAATTTGCTATCTCTACCTTTTGCTGCCTTCTTGATTATTTTGTTTGGCGAATGGGAATACGTGATTAATGCGGATGTAGTTAAATTGCCAATGTTTTGGATTATCGCAACAGCTAGCGGGTTGCTTGGACTTGCCATCAGCTTCACTTCCATGTGGTTTCTACATCAAACTGGACCAACCACCTATAGTTTGGTGGGTTCCTTGAACAAAATTCCTATCTCTCTTGCTGGTTTAGTCCTGTTCAGGGTGCCTCTCAGTCTACCAAACCTCTTCAGCATACTATTTGGTTTATTTGCTGGAATATTTTTCGCCAGGGCCAAAATGTCTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
TPT

Protein Analysis

373

Amino Acids

41.03

Weight (kDa)

9.38

Isoelectric Point (pI)

29.53

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
TPT PF03151 82 - 358 2.7e-12 Triose-phosphate Transporter family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 300
AccB1I GGYRCC 1 cut(s) 1036
AccB7I CCANNNNNTGG 1 cut(s) 59
AccI GTMKAC 2 cut(s) 743, 1048
AciI CCGC 2 cut(s) 860, 906
AclWI GGATC 3 cut(s) 421, 434, 763
AcsI RAATTY 2 cut(s) 337, 999
AcuI CTGAAG 2 cut(s) 533, 1045
AcyI GRCGYC 1 cut(s) 156
AfaI GTAC 1 cut(s) 78
AfiI CCNNNNNNNGG 2 cut(s) 59, 1033
AgsI TTSAA 5 cut(s) 16, 481, 678, 787, 994
AjnI CCWGG 1 cut(s) 1100
AluBI AGCT 4 cut(s) 400, 699, 902, 930
AluI AGCT 4 cut(s) 400, 699, 902, 930
Alw26I GTCTC 1 cut(s) 166
AlwI GGATC 3 cut(s) 421, 434, 763
AoxI GGCC 2 cut(s) 34, 1104
ApeKI GCWGC 2 cut(s) 261, 812
ApoI RAATTY 2 cut(s) 337, 999
AseI ATTAAT 1 cut(s) 855
AspS9I GGNCC 4 cut(s) 49, 221, 962, 1104
AsuHPI GGTGA 1 cut(s) 514
AsuNHI GCTAGC 1 cut(s) 902
AvaII GGWCC 3 cut(s) 49, 221, 962
BamHI GGATCC 1 cut(s) 426
BanI GGYRCC 1 cut(s) 1036
BbvI GCAGC 2 cut(s) 273, 799
BccI CCATC 2 cut(s) 769, 932
BceAI ACGGC 1 cut(s) 143
BcgI CGANNNNNNTGC 2 cut(s) 300, 334
BciT130I CCWGG 1 cut(s) 1102
BcoDI GTCTC 1 cut(s) 166
BfaI CTAG 1 cut(s) 903
BfmI CTRYAG 1 cut(s) 973
BglII AGATCT 1 cut(s) 749
BisI GCNGC 2 cut(s) 262, 813
BlsI GCNGC 2 cut(s) 263, 814
Bme1390I CCNGG 1 cut(s) 1102
Bme18I GGWCC 3 cut(s) 49, 221, 962
BmgT120I GGNCC 4 cut(s) 49, 221, 962, 1104
BmiI GGNNCC 4 cut(s) 51, 428, 988, 1038
BmrFI CCNGG 1 cut(s) 1102
BmrI ACTGGG 1 cut(s) 551
BmtI GCTAGC 1 cut(s) 906
BmuI ACTGGG 1 cut(s) 551
BpmI CTGGAG 1 cut(s) 399
BsaAI YACGTR 2 cut(s) 487, 850
BsaBI GATNNNNATC 2 cut(s) 608, 754
BsaHI GRCGYC 1 cut(s) 156
BsaJI CCNNGG 1 cut(s) 1101
BsaWI WCCGGW 1 cut(s) 293
Bsc4I CCNNNNNNNGG 2 cut(s) 59, 1033
Bse1I ACTGG 2 cut(s) 546, 964
Bse3DI GCAATG 1 cut(s) 504
Bse8I GATNNNNATC 2 cut(s) 608, 754
BseBI CCWGG 1 cut(s) 1102
BseDI CCNNGG 1 cut(s) 1101
BseGI GGATG 2 cut(s) 733, 868
BseJI GATNNNNATC 2 cut(s) 608, 754
BseLI CCNNNNNNNGG 2 cut(s) 59, 1033
BseMI GCAATG 1 cut(s) 504
BseMII CTCAG 2 cut(s) 127, 1057
BseNI ACTGG 2 cut(s) 546, 964
BseXI GCAGC 2 cut(s) 273, 799
BshFI GGCC 2 cut(s) 36, 1106
BshNI GGYRCC 1 cut(s) 1036
BsiSI CCGG 1 cut(s) 294
BslI CCNNNNNNNGG 2 cut(s) 59, 1033
BsmAI GTCTC 1 cut(s) 166
BsmBI CGTCTC 1 cut(s) 166
BsnI GGCC 2 cut(s) 36, 1106
Bsp143I GATC 3 cut(s) 426, 749, 755
BspACI CCGC 2 cut(s) 860, 906
BspANI GGCC 2 cut(s) 36, 1106
BspCNI CTCAG 2 cut(s) 126, 1056
BspLI GGNNCC 4 cut(s) 51, 428, 988, 1038
BspOI GCTAGC 1 cut(s) 906
BspPI GGATC 3 cut(s) 421, 434, 763
BspT107I GGYRCC 1 cut(s) 1036
BsrDI GCAATG 1 cut(s) 504
BsrI ACTGG 2 cut(s) 546, 964
BssECI CCNNGG 1 cut(s) 1101
BssMI GATC 3 cut(s) 426, 749, 755
BssNAI GTATAC 1 cut(s) 744
BssNI GRCGYC 1 cut(s) 156
Bst1107I GTATAC 1 cut(s) 744
Bst2UI CCWGG 1 cut(s) 1102
Bst4CI ACNGT 2 cut(s) 352, 655
Bst6I CTCTTC 1 cut(s) 1064
BstACI GRCGYC 1 cut(s) 156
BstBAI YACGTR 2 cut(s) 487, 850
BstC8I GCNNGC 4 cut(s) 207, 455, 697, 904
BstDEI CTNAG 2 cut(s) 113, 1043
BstEII GGTNACC 1 cut(s) 502
BstF5I GGATG 2 cut(s) 733, 868
BstKTI GATC 3 cut(s) 429, 752, 758
BstMAI GTCTC 1 cut(s) 166
BstMBI GATC 3 cut(s) 426, 749, 755
BstNI CCWGG 1 cut(s) 1102
BstNSI RCATGY 2 cut(s) 457, 472
BstPI GGTNACC 1 cut(s) 502
BstSCI CCNGG 1 cut(s) 1100
BstSFI CTRYAG 1 cut(s) 973
BstSNI TACGTA 1 cut(s) 487
BstV1I GCAGC 2 cut(s) 273, 799
BstX2I RGATCY 3 cut(s) 426, 749, 755
BstXI CCANNNNNNTGG 1 cut(s) 885
BstYI RGATCY 3 cut(s) 426, 749, 755
BstZ17I GTATAC 1 cut(s) 744
BsuRI GGCC 2 cut(s) 36, 1106
BtsCI GGATG 2 cut(s) 733, 868
BtsI GCAGTG 1 cut(s) 631
BtsIMutI CAGTG 3 cut(s) 121, 539, 631
Cac8I GCNNGC 4 cut(s) 207, 455, 697, 904
Cfr13I GGNCC 4 cut(s) 49, 221, 962, 1104
CseI GACGC 1 cut(s) 164
Csp6I GTAC 1 cut(s) 77
CviJI RGCY 7 cut(s) 36, 372, 400, 699, 902, 930, 1106
CviKI_1 RGCY 7 cut(s) 36, 372, 400, 699, 902, 930, 1106
CviQI GTAC 1 cut(s) 77
DdeI CTNAG 2 cut(s) 113, 1043
DpnI GATC 3 cut(s) 428, 751, 757
DpnII GATC 3 cut(s) 426, 749, 755
Eam1104I CTCTTC 1 cut(s) 1064
EarI CTCTTC 1 cut(s) 1064
Eco105I TACGTA 1 cut(s) 487
Eco32I GATATC 2 cut(s) 240, 640
Eco47I GGWCC 3 cut(s) 49, 221, 962
Eco57I CTGAAG 2 cut(s) 533, 1045
Eco91I GGTNACC 1 cut(s) 502
EcoO109I RGGNCCY 1 cut(s) 49
EcoO65I GGTNACC 1 cut(s) 502
EcoRII CCWGG 1 cut(s) 1100
EcoRV GATATC 2 cut(s) 240, 640
Esp3I CGTCTC 1 cut(s) 166
FauI CCCGC 1 cut(s) 899
FblI GTMKAC 2 cut(s) 743, 1048
Fnu4HI GCNGC 2 cut(s) 262, 813
FokI GGATG 2 cut(s) 740, 875
Fsp4HI GCNGC 2 cut(s) 262, 813
FspBI CTAG 1 cut(s) 903
GluI GCNGC 2 cut(s) 262, 813
GsuI CTGGAG 1 cut(s) 399
HaeIII GGCC 2 cut(s) 36, 1106
HapII CCGG 1 cut(s) 294
HgaI GACGC 1 cut(s) 164
Hin1I GRCGYC 1 cut(s) 156
HinfI GANTC 5 cut(s) 85, 109, 136, 574, 720
HpaII CCGG 1 cut(s) 294
HphI GGTGA 1 cut(s) 514
Hpy166II GTNNAC 3 cut(s) 588, 744, 1049
Hpy188I TCNGA 7 cut(s) 10, 131, 513, 564, 579, 603, 762
Hpy188III TCNNGA 6 cut(s) 219, 378, 424, 753, 820, 1116
Hpy8I GTNNAC 3 cut(s) 588, 744, 1049
Hpy99I CGWCG 2 cut(s) 158, 720
HpyAV CCTTC 1 cut(s) 826
HpyCH4III ACNGT 2 cut(s) 352, 655
HpyCH4IV ACGT 3 cut(s) 486, 715, 849
HpyCH4V TGCA 5 cut(s) 92, 261, 311, 497, 684
HpyF3I CTNAG 2 cut(s) 113, 1043
HpySE526I ACGT 3 cut(s) 486, 715, 849
Hsp92I GRCGYC 1 cut(s) 156
Kzo9I GATC 3 cut(s) 426, 749, 755
LmnI GCTCC 1 cut(s) 391
Lsp1109I GCAGC 2 cut(s) 273, 799
MaeI CTAG 1 cut(s) 903
MaeII ACGT 3 cut(s) 486, 715, 849
MaeIII GTNAC 4 cut(s) 116, 176, 502, 520
MalI GATC 3 cut(s) 428, 751, 757
MboI GATC 3 cut(s) 426, 749, 755
MboII GAAGA 4 cut(s) 111, 436, 526, 1051
MfeI CAATTG 1 cut(s) 403
MflI RGATCY 3 cut(s) 426, 749, 755
MlyI GAGTC 2 cut(s) 103, 729
MnlI CCTC 6 cut(s) 16, 40, 125, 234, 1050, 1067
MseI TTAA 7 cut(s) 30, 306, 417, 435, 533, 855, 870
MslI CAYNNNNRTG 3 cut(s) 198, 452, 938
MspI CCGG 1 cut(s) 294
MspR9I CCNGG 1 cut(s) 1102
MunI CAATTG 1 cut(s) 403
MvaI CCWGG 1 cut(s) 1102
NdeII GATC 3 cut(s) 426, 749, 755
NheI GCTAGC 1 cut(s) 902
NlaIV GGNNCC 4 cut(s) 51, 428, 988, 1038
NmuCI GTSAC 4 cut(s) 116, 176, 502, 520
NspI RCATGY 2 cut(s) 457, 472
PaeI GCATGC 1 cut(s) 457
PfeI GAWTC 3 cut(s) 85, 136, 574
PflFI GACNNNGTC 1 cut(s) 158
PflMI CCANNNNNTGG 1 cut(s) 59
PkrI GCNGC 2 cut(s) 263, 814
PleI GAGTC 2 cut(s) 103, 728
PpsI GAGTC 2 cut(s) 103, 728
Ppu21I YACGTR 2 cut(s) 487, 850
PpuMI RGGWCCY 1 cut(s) 49
PshBI ATTAAT 1 cut(s) 855
PsiI TTATAA 1 cut(s) 300
Psp5II RGGWCCY 1 cut(s) 49
Psp6I CCWGG 1 cut(s) 1100
PspEI GGTNACC 1 cut(s) 502
PspGI CCWGG 1 cut(s) 1100
PspN4I GGNNCC 4 cut(s) 51, 428, 988, 1038
PspPI GGNCC 4 cut(s) 49, 221, 962, 1104
PspPPI RGGWCCY 1 cut(s) 49
PsuI RGATCY 3 cut(s) 426, 749, 755
PsyI GACNNNGTC 1 cut(s) 158
RsaI GTAC 1 cut(s) 78
RsaNI GTAC 1 cut(s) 77
RseI CAYNNNNRTG 3 cut(s) 198, 452, 938
SaqAI TTAA 7 cut(s) 30, 306, 417, 435, 533, 855, 870
SatI GCNGC 2 cut(s) 262, 813
Sau3AI GATC 3 cut(s) 426, 749, 755
Sau96I GGNCC 4 cut(s) 49, 221, 962, 1104
SchI GAGTC 2 cut(s) 103, 729
ScrFI CCNGG 1 cut(s) 1102
SfcI CTRYAG 1 cut(s) 973
SinI GGWCC 3 cut(s) 49, 221, 962
SmiMI CAYNNNNRTG 3 cut(s) 198, 452, 938
SnaBI TACGTA 1 cut(s) 487
SphI GCATGC 1 cut(s) 457
SsiI CCGC 2 cut(s) 860, 906
SspI AATATT 3 cut(s) 493, 529, 1092
SspMI CTAG 1 cut(s) 903
StyD4I CCNGG 1 cut(s) 1100
TaaI ACNGT 2 cut(s) 352, 655
TaiI ACGT 3 cut(s) 489, 718, 852
TaqI TCGA 3 cut(s) 139, 718, 773
TatI WGTACW 1 cut(s) 76
TfiI GAWTC 3 cut(s) 85, 136, 574
Tru1I TTAA 7 cut(s) 30, 306, 417, 435, 533, 855, 870
Tru9I TTAA 7 cut(s) 30, 306, 417, 435, 533, 855, 870
TscAI CASTG 3 cut(s) 121, 546, 631
TseFI GTSAC 4 cut(s) 116, 176, 502, 520
TseI GCWGC 2 cut(s) 261, 812
Tsp45I GTSAC 4 cut(s) 116, 176, 502, 520
TspDTI ATGAA 5 cut(s) 54, 201, 436, 744, 780
TspGWI ACGGA 1 cut(s) 195
TspRI CASTG 3 cut(s) 121, 546, 631
Tth111I GACNNNGTC 1 cut(s) 158
Van91I CCANNNNNTGG 1 cut(s) 59
VpaK11BI GGWCC 3 cut(s) 49, 221, 962
VspI ATTAAT 1 cut(s) 855
XapI RAATTY 2 cut(s) 337, 999
XceI RCATGY 2 cut(s) 457, 472
XcmI CCANNNNNNNNNTGG 1 cut(s) 976
XmiI GTMKAC 2 cut(s) 743, 1048
XspI CTAG 1 cut(s) 903
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.