MD03G1073200.v1.1

GDP-mannose transporter

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr03
OG0008024
Physical Location & Seq
Reverse (-)
5954623 .. 5957598
2976 bp
Loading structure...
UTR
Exon/CDS
Intron
MD03G1073200.v1.1.491

Sequence Viewer

Length: 1197 bp
ATGGGGAAGTGTTCCTCATTCCCAAATATTTTTAAATTTCTCTGGCAGTCGCCTGGAATCTCGCCTTCCCACTCTGTGGGTGATATGTCATCTGATTTCGAGTTGGATCAAGTAAAAGGCCATGATAGTGAGGACCCAGAAGTTGGCTCTATCAATGGAGGACTACATTCGATCCTTCCGGAACGAAGAGCTGTGACATTGACTGACAGGTTGTTTAGAGGGAGTCGAGGAGGGCATGGTGCCTCTGTTCCAAACGGTGGGGATGAAGAGCGTGAACATGGGTCAGCAAGGAAATCTGGACCTCTGTTGTCTGGGACAGCTTATTGCATTTCTTCTTGCAGTATGATATTGCTGAACAAAGTTGTTCTGTCCGGTTACAACTTCAATGCAGGCGTGTCATTGATGTTTTATCAAAATTTGATAAGTACCGTAATTGTTGTCCTCTTGGGCTTCTCTGGAGTCGTTACAGTGGAAAAGTTGAATTGGAAACTGGTTAGGGTCTGGATCCCTGTCAATGTAATCTTCATCGGCATGCTTGTATCGGGCATGTATAGTTTGAAGTACGTAAACATAGCAATGGTAACCATTCTGAAGAATGTGACAAATATTTTAACAGCACTTGGAGAATTGTATTTGTTCCGGAAACATCAGAACCAGAAAGTGTGGACTGCCATGTTTTTTATGATTATCTCTGCTATCAGCAGTGGCATTACAGATATCTCCTTCGATACGGTAGGTTACGCATGGCAGCTTTCAAACTGCGTACTAACCGCAAGCTACTCACTCACTCTACGGCGAGTCATGGATGAAGCAAAGAAGTACACAAGATCTGGATCGCTCAACGAAGTTTCAATGGTCTTGCTGAATAATTTGTTATCTCTACCTTTCGCTGCATTTTTTATTATTCTGTTTGATGAATGGGAATACGTACTGAACGTAGATGTGATCAAATTGCCAATGTTTTGGGTTGTTGCTACAGCTAGCGGATTGCTTGGACTTGCCATCAGCTTCACCTCCATGTGGTTTTTACATCAAACTGGCCCGACCACCTACAGTCTCGTCGGTTCCTTAAACAAAATTCCTATCTCTCTCGCTGGTTTAGTCCTTTTCAAAGTGCCTCTTAGTCCACCAAACCTCTTCAGCATACTATTTGGTTTATTCGCCGGAGTATTCTTCGCCAGGGCCAAAATGTCCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
TPT

Protein Analysis

399

Amino Acids

43.73

Weight (kDa)

8.93

Isoelectric Point (pI)

31.48

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
TPT PF03151 107 - 391 4.3e-12 Triose-phosphate Transporter family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 239
AccB7I CCANNNNNTGG 3 cut(s) 76, 143, 257
AccIII TCCGGA 2 cut(s) 178, 639
AciI CCGC 2 cut(s) 771, 984
AclWI GGATC 5 cut(s) 114, 166, 499, 512, 841
AcsI RAATTY 3 cut(s) 35, 415, 1077
AcuI CTGAAG 2 cut(s) 611, 1123
AdeI CACNNNGTG 1 cut(s) 76
AfaI GTAC 5 cut(s) 427, 563, 765, 821, 930
AfiI CCNNNNNNNGG 4 cut(s) 76, 143, 257, 1020
AgsI TTSAA 6 cut(s) 385, 481, 559, 756, 852, 1111
AjnI CCWGG 2 cut(s) 52, 1178
AluBI AGCT 6 cut(s) 191, 320, 751, 777, 980, 1008
AluI AGCT 6 cut(s) 191, 320, 751, 777, 980, 1008
Alw26I GTCTC 1 cut(s) 1061
AlwI GGATC 5 cut(s) 114, 166, 499, 512, 841
Aor13HI TCCGGA 2 cut(s) 178, 639
AoxI GGCC 3 cut(s) 118, 1039, 1182
ApeKI GCWGC 2 cut(s) 748, 890
ApoI RAATTY 3 cut(s) 35, 415, 1077
AspS9I GGNCC 4 cut(s) 133, 299, 1040, 1182
AsuHPI GGTGA 2 cut(s) 92, 1003
AsuNHI GCTAGC 1 cut(s) 980
AvaII GGWCC 2 cut(s) 133, 299
BamHI GGATCC 1 cut(s) 504
BanI GGYRCC 1 cut(s) 239
BbvI GCAGC 2 cut(s) 760, 877
BccI CCATC 1 cut(s) 1010
BceAI ACGGC 1 cut(s) 809
BciT130I CCWGG 2 cut(s) 54, 1180
BclI TGATCA 1 cut(s) 945
BcoDI GTCTC 1 cut(s) 1061
BfaI CTAG 1 cut(s) 981
BfmI CTRYAG 2 cut(s) 975, 1051
BglII AGATCT 1 cut(s) 827
BisI GCNGC 2 cut(s) 749, 891
BlsI GCNGC 2 cut(s) 750, 892
Bme1390I CCNGG 2 cut(s) 54, 1180
Bme18I GGWCC 2 cut(s) 133, 299
BmgT120I GGNCC 4 cut(s) 133, 299, 1040, 1182
BmiI GGNNCC 4 cut(s) 135, 241, 506, 1066
BmrFI CCNGG 2 cut(s) 54, 1180
BmtI GCTAGC 1 cut(s) 984
BpmI CTGGAG 1 cut(s) 477
BsaAI YACGTR 2 cut(s) 565, 928
BsaBI GATNNNNATC 1 cut(s) 832
BsaJI CCNNGG 1 cut(s) 1179
BsaWI WCCGGW 3 cut(s) 178, 371, 639
Bsc4I CCNNNNNNNGG 4 cut(s) 76, 143, 257, 1020
Bse1I ACTGG 2 cut(s) 495, 1042
Bse3DI GCAATG 1 cut(s) 582
Bse8I GATNNNNATC 1 cut(s) 832
BseAI TCCGGA 2 cut(s) 178, 639
BseBI CCWGG 2 cut(s) 54, 1180
BseDI CCNNGG 1 cut(s) 1179
BseGI GGATG 2 cut(s) 268, 811
BseJI GATNNNNATC 1 cut(s) 832
BseLI CCNNNNNNNGG 4 cut(s) 76, 143, 257, 1020
BseMI GCAATG 1 cut(s) 582
BseNI ACTGG 2 cut(s) 495, 1042
BseRI GAGGAG 1 cut(s) 243
BseXI GCAGC 2 cut(s) 760, 877
BshFI GGCC 3 cut(s) 120, 1041, 1184
BshNI GGYRCC 1 cut(s) 239
BsiSI CCGG 4 cut(s) 179, 372, 640, 1164
BslFI GGGAC 1 cut(s) 328
BslI CCNNNNNNNGG 4 cut(s) 76, 143, 257, 1020
BsmAI GTCTC 1 cut(s) 1061
BsmFI GGGAC 1 cut(s) 328
BsnI GGCC 3 cut(s) 120, 1041, 1184
Bsp13I TCCGGA 2 cut(s) 178, 639
Bsp143I GATC 6 cut(s) 106, 171, 504, 827, 833, 945
BspACI CCGC 2 cut(s) 771, 984
BspANI GGCC 3 cut(s) 120, 1041, 1184
BspEI TCCGGA 2 cut(s) 178, 639
BspLI GGNNCC 4 cut(s) 135, 241, 506, 1066
BspOI GCTAGC 1 cut(s) 984
BspPI GGATC 5 cut(s) 114, 166, 499, 512, 841
BspQI GCTCTTC 2 cut(s) 181, 261
BspT107I GGYRCC 1 cut(s) 239
BsrDI GCAATG 1 cut(s) 582
BsrI ACTGG 2 cut(s) 495, 1042
BssECI CCNNGG 1 cut(s) 1179
BssMI GATC 6 cut(s) 106, 171, 504, 827, 833, 945
Bst2UI CCWGG 2 cut(s) 54, 1180
Bst4CI ACNGT 5 cut(s) 257, 430, 469, 733, 1055
Bst6I CTCTTC 3 cut(s) 181, 261, 1142
BstBAI YACGTR 2 cut(s) 565, 928
BstC8I GCNNGC 4 cut(s) 391, 533, 775, 982
BstDEI CTNAG 1 cut(s) 1121
BstEII GGTNACC 1 cut(s) 580
BstF5I GGATG 2 cut(s) 268, 811
BstKTI GATC 6 cut(s) 109, 174, 507, 830, 836, 948
BstMAI GTCTC 1 cut(s) 1061
BstMBI GATC 6 cut(s) 106, 171, 504, 827, 833, 945
BstNI CCWGG 2 cut(s) 54, 1180
BstNSI RCATGY 2 cut(s) 535, 550
BstPI GGTNACC 1 cut(s) 580
BstSCI CCNGG 2 cut(s) 52, 1178
BstSFI CTRYAG 2 cut(s) 975, 1051
BstSNI TACGTA 2 cut(s) 565, 928
BstV1I GCAGC 2 cut(s) 760, 877
BstX2I RGATCY 2 cut(s) 504, 827
BstXI CCANNNNNNTGG 1 cut(s) 963
BstYI RGATCY 2 cut(s) 504, 827
BsuRI GGCC 3 cut(s) 120, 1041, 1184
BtsCI GGATG 2 cut(s) 268, 811
BtsI GCAGTG 1 cut(s) 709
BtsIMutI CAGTG 2 cut(s) 474, 709
Cac8I GCNNGC 4 cut(s) 391, 533, 775, 982
Cfr13I GGNCC 4 cut(s) 133, 299, 1040, 1182
Csp6I GTAC 5 cut(s) 426, 562, 764, 820, 929
CviAII CATG 9 cut(s) 122, 236, 278, 532, 547, 673, 744, 802, 1018
CviQI GTAC 5 cut(s) 426, 562, 764, 820, 929
DdeI CTNAG 1 cut(s) 1121
DpnI GATC 6 cut(s) 108, 173, 506, 829, 835, 947
DpnII GATC 6 cut(s) 106, 171, 504, 827, 833, 945
DraI TTTAAA 1 cut(s) 34
DraIII CACNNNGTG 1 cut(s) 76
Eam1104I CTCTTC 3 cut(s) 181, 261, 1142
EarI CTCTTC 3 cut(s) 181, 261, 1142
Eco105I TACGTA 2 cut(s) 565, 928
Eco32I GATATC 1 cut(s) 718
Eco47I GGWCC 2 cut(s) 133, 299
Eco57I CTGAAG 2 cut(s) 611, 1123
Eco91I GGTNACC 1 cut(s) 580
EcoO109I RGGNCCY 1 cut(s) 133
EcoO65I GGTNACC 1 cut(s) 580
EcoRII CCWGG 2 cut(s) 52, 1178
EcoRV GATATC 1 cut(s) 718
FaeI CATG 9 cut(s) 125, 239, 281, 535, 550, 676, 747, 805, 1021
FalI AAGNNNNNCTT 2 cut(s) 1104, 1136
FaqI GGGAC 1 cut(s) 328
FatI CATG 9 cut(s) 121, 235, 277, 531, 546, 672, 743, 801, 1017
FbaI TGATCA 1 cut(s) 945
Fnu4HI GCNGC 2 cut(s) 749, 891
FokI GGATG 2 cut(s) 275, 818
Fsp4HI GCNGC 2 cut(s) 749, 891
FspBI CTAG 1 cut(s) 981
GluI GCNGC 2 cut(s) 749, 891
GsuI CTGGAG 1 cut(s) 477
HaeIII GGCC 3 cut(s) 120, 1041, 1184
HapII CCGG 4 cut(s) 179, 372, 640, 1164
Hin1II CATG 9 cut(s) 125, 239, 281, 535, 550, 676, 747, 805, 1021
HinfI GANTC 4 cut(s) 57, 223, 459, 798
HpaII CCGG 4 cut(s) 179, 372, 640, 1164
HphI GGTGA 2 cut(s) 92, 1003
Hpy166II GTNNAC 5 cut(s) 275, 568, 666, 822, 1127
Hpy188I TCNGA 3 cut(s) 94, 591, 651
Hpy188III TCNNGA 7 cut(s) 179, 297, 456, 502, 640, 831, 1194
Hpy8I GTNNAC 5 cut(s) 275, 568, 666, 822, 1127
Hpy99I CGWCG 1 cut(s) 1064
HpyAV CCTTC 3 cut(s) 75, 185, 733
HpyCH4III ACNGT 5 cut(s) 257, 430, 469, 733, 1055
HpyCH4IV ACGT 3 cut(s) 564, 927, 936
HpyCH4V TGCA 4 cut(s) 327, 339, 389, 893
HpyF3I CTNAG 1 cut(s) 1121
HpySE526I ACGT 3 cut(s) 564, 927, 936
Hsp92II CATG 9 cut(s) 125, 239, 281, 535, 550, 676, 747, 805, 1021
Kpn2I TCCGGA 2 cut(s) 178, 639
Ksp22I TGATCA 1 cut(s) 945
Kzo9I GATC 6 cut(s) 106, 171, 504, 827, 833, 945
LguI GCTCTTC 2 cut(s) 181, 261
Lsp1109I GCAGC 2 cut(s) 760, 877
MaeI CTAG 1 cut(s) 981
MaeII ACGT 3 cut(s) 564, 927, 936
MaeIII GTNAC 6 cut(s) 193, 374, 463, 580, 598, 737
MalI GATC 6 cut(s) 108, 173, 506, 829, 835, 947
MboI GATC 6 cut(s) 106, 171, 504, 827, 833, 945
MboII GAAGA 7 cut(s) 198, 278, 324, 514, 604, 1129, 1165
MflI RGATCY 2 cut(s) 504, 827
MluCI AATT 8 cut(s) 35, 415, 432, 481, 626, 868, 950, 1077
MlyI GAGTC 3 cut(s) 232, 468, 807
MmeI TCCRAC 1 cut(s) 84
MroI TCCGGA 2 cut(s) 178, 639
MseI TTAA 3 cut(s) 33, 611, 1070
MslI CAYNNNNRTG 4 cut(s) 126, 530, 575, 1016
MspI CCGG 4 cut(s) 179, 372, 640, 1164
MspR9I CCNGG 2 cut(s) 54, 1180
MvaI CCWGG 2 cut(s) 54, 1180
NdeII GATC 6 cut(s) 106, 171, 504, 827, 833, 945
NheI GCTAGC 1 cut(s) 980
NlaIII CATG 9 cut(s) 125, 239, 281, 535, 550, 676, 747, 805, 1021
NlaIV GGNNCC 4 cut(s) 135, 241, 506, 1066
NmuCI GTSAC 2 cut(s) 193, 598
NspI RCATGY 2 cut(s) 535, 550
PaeI GCATGC 1 cut(s) 535
PciSI GCTCTTC 2 cut(s) 181, 261
PcsI WCGNNNNNNNCGW 1 cut(s) 933
PfeI GAWTC 1 cut(s) 57
PflMI CCANNNNNTGG 3 cut(s) 76, 143, 257
PkrI GCNGC 2 cut(s) 750, 892
PleI GAGTC 3 cut(s) 231, 467, 806
PpsI GAGTC 3 cut(s) 231, 467, 806
Ppu21I YACGTR 2 cut(s) 565, 928
PpuMI RGGWCCY 1 cut(s) 133
Psp5II RGGWCCY 1 cut(s) 133
Psp6I CCWGG 2 cut(s) 52, 1178
PspEI GGTNACC 1 cut(s) 580
PspGI CCWGG 2 cut(s) 52, 1178
PspN4I GGNNCC 4 cut(s) 135, 241, 506, 1066
PspPI GGNCC 4 cut(s) 133, 299, 1040, 1182
PspPPI RGGWCCY 1 cut(s) 133
PsuI RGATCY 2 cut(s) 504, 827
RsaI GTAC 5 cut(s) 427, 563, 765, 821, 930
RsaNI GTAC 5 cut(s) 426, 562, 764, 820, 929
RseI CAYNNNNRTG 4 cut(s) 126, 530, 575, 1016
SapI GCTCTTC 2 cut(s) 181, 261
SaqAI TTAA 3 cut(s) 33, 611, 1070
SatI GCNGC 2 cut(s) 749, 891
Sau3AI GATC 6 cut(s) 106, 171, 504, 827, 833, 945
Sau96I GGNCC 4 cut(s) 133, 299, 1040, 1182
SchI GAGTC 3 cut(s) 232, 468, 807
ScrFI CCNGG 2 cut(s) 54, 1180
SfcI CTRYAG 2 cut(s) 975, 1051
SinI GGWCC 2 cut(s) 133, 299
SmiMI CAYNNNNRTG 4 cut(s) 126, 530, 575, 1016
SnaBI TACGTA 2 cut(s) 565, 928
SphI GCATGC 1 cut(s) 535
Sse9I AATT 8 cut(s) 35, 415, 432, 481, 626, 868, 950, 1077
SsiI CCGC 2 cut(s) 771, 984
SspI AATATT 2 cut(s) 28, 607
SspMI CTAG 1 cut(s) 981
StyD4I CCNGG 2 cut(s) 52, 1178
TaaI ACNGT 5 cut(s) 257, 430, 469, 733, 1055
TaiI ACGT 3 cut(s) 567, 930, 939
TaqI TCGA 4 cut(s) 99, 170, 226, 726
TasI AATT 8 cut(s) 35, 415, 432, 481, 626, 868, 950, 1077
TatI WGTACW 1 cut(s) 819
TfiI GAWTC 1 cut(s) 57
Tru1I TTAA 3 cut(s) 33, 611, 1070
Tru9I TTAA 3 cut(s) 33, 611, 1070
TscAI CASTG 2 cut(s) 474, 709
TseFI GTSAC 2 cut(s) 193, 598
TseI GCWGC 2 cut(s) 748, 890
Tsp45I GTSAC 2 cut(s) 193, 598
TspDTI ATGAA 4 cut(s) 279, 514, 822, 930
TspRI CASTG 2 cut(s) 474, 709
Van91I CCANNNNNTGG 3 cut(s) 76, 143, 257
VpaK11BI GGWCC 2 cut(s) 133, 299
XapI RAATTY 3 cut(s) 35, 415, 1077
XceI RCATGY 2 cut(s) 535, 550
XspI CTAG 1 cut(s) 981
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.