Rh5BG469600

GDP-mannose transporter

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5B
OG0008024
Physical Location & Seq
Forward (+)
74808340 .. 74810866
2527 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh5BG469600.1

Sequence Viewer

Length: 1119 bp
ATGTCGTCTGATTTCAAGTTAGAGGGAGTTAAAGACCATGAAATTGAGGACCCAGAAGTTGGTTCTCCAAATGGAATACATAATATTCTTGCGGAGCGAAGAACTATGACTCTCAGTGACAGGTTGTTTAGAGGGAATCGAGCAGGGCATGGTGACACCATCTCTTTTAGTCCGAGTGACGGAAATGAAAATCATGGACATGGGTCAGCAAAGAAATCTGGACCTCTGTTGTCTGGGACAGCATATTGCATTTCATCCTGCAGCATGATATTGCTGAATAAAGTTGTTCTATCCAGTTACAACTTCAATGCAGGAGTATCACTGATGTTTTATCAAAATTTGATAAGTACTGTAATTGTTGTATTCTTGGGCTTCTCTGGAGTTGTTACTGTGGAAAGGCTCAATTGGAAACTGATTAAGGTCTGGATCCCTGTTAATGTAATCTTCATCGGCATGCTTGTATCAGGCATGTATAGTTTGAAATTCGTAAATATTGCAATGGTGACCATTCTGAAGAATGTGACAAATATTTTAACAGCACTGGGAGAATTATACATGTTCCGGAAACACCAGAATCAGAAAGTGTGGACTGCCATGTTTCTGATGATTATCTCTGCTATCAGCAGTGGCATTACAGATATCTCCTTTGATACTGTAGGTTATGCTTGGCAATTTTCAAATTGCATACTAACAGCAAGCTACTCACTCACTCTACGGCGAGTCATGGATGAAGCAAAAAAGTACACAAGATCCGGATCTCTAAATGAAGTTTCAATGGTCTTGCTGAATAATTTGCTATCTCTACCTTTTGCTGCCTTCTTGATTATTCTGTTTGATGAATGGGAATATGTGATCAATGCGGATGTAGTTAAGTTGCCAGTGTTTTGGGTTGTTGCAACAGCTAGTGGATTGCTTGGACTTTCCATTAGCTTCACTTCCATGTGGTTTCTACATCAAACTGGCCCAACCACCTATAGTCTGGTGGGTTCCTTAAACAAGATTCCTATCTCTATTGCTGGTTTAGTCCTGTTCAGGGTGCCTCTCAGTCTACCAAACCTCTTCAGCATACTATTTGGTTTATTTGCTGGAATATTTTTCGCCAGGGCAAAAATGACTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
TPT

Protein Analysis

372

Amino Acids

41.11

Weight (kDa)

9.02

Isoelectric Point (pI)

29.83

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
TPT PF03151 81 - 358 1.3e-11 Triose-phosphate Transporter family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 1036
AccB7I CCANNNNNTGG 1 cut(s) 59
AccI GTMKAC 1 cut(s) 1048
AccIII TCCGGA 2 cut(s) 561, 752
AciI CCGC 2 cut(s) 92, 860
AclWI GGATC 4 cut(s) 421, 434, 744, 763
AcsI RAATTY 2 cut(s) 337, 482
AcuI CTGAAG 2 cut(s) 533, 1045
AfaI GTAC 2 cut(s) 349, 743
AfiI CCNNNNNNNGG 3 cut(s) 59, 179, 1033
AflIII ACRYGT 1 cut(s) 555
AgsI TTSAA 5 cut(s) 16, 307, 481, 678, 774
AjnI CCWGG 1 cut(s) 1100
AluBI AGCT 3 cut(s) 699, 902, 930
AluI AGCT 3 cut(s) 699, 902, 930
AlwI GGATC 4 cut(s) 421, 434, 744, 763
Aor13HI TCCGGA 2 cut(s) 561, 752
AoxI GGCC 1 cut(s) 961
ApeKI GCWGC 2 cut(s) 261, 812
ApoI RAATTY 2 cut(s) 337, 482
AspS9I GGNCC 3 cut(s) 49, 221, 962
AsuHPI GGTGA 2 cut(s) 164, 514
AvaII GGWCC 2 cut(s) 49, 221
BamHI GGATCC 1 cut(s) 426
BanI GGYRCC 1 cut(s) 1036
BbvI GCAGC 2 cut(s) 273, 799
BccI CCATC 1 cut(s) 167
BceAI ACGGC 1 cut(s) 731
BciT130I CCWGG 1 cut(s) 1102
BclI TGATCA 1 cut(s) 852
BfaI CTAG 1 cut(s) 903
BfmI CTRYAG 3 cut(s) 259, 654, 973
BisI GCNGC 2 cut(s) 262, 813
BlsI GCNGC 2 cut(s) 263, 814
BmcAI AGTACT 1 cut(s) 349
Bme1390I CCNGG 1 cut(s) 1102
Bme18I GGWCC 2 cut(s) 49, 221
BmgT120I GGNCC 3 cut(s) 49, 221, 962
BmiI GGNNCC 4 cut(s) 51, 428, 988, 1038
BmrFI CCNGG 1 cut(s) 1102
BmrI ACTGGG 1 cut(s) 551
BmuI ACTGGG 1 cut(s) 551
BoxI GACNNNNGTC 1 cut(s) 202
BpmI CTGGAG 1 cut(s) 399
BsaBI GATNNNNATC 3 cut(s) 608, 754, 1004
BsaJI CCNNGG 1 cut(s) 1101
BsaWI WCCGGW 2 cut(s) 561, 752
Bsc4I CCNNNNNNNGG 3 cut(s) 59, 179, 1033
Bse1I ACTGG 4 cut(s) 294, 546, 878, 964
Bse3DI GCAATG 1 cut(s) 504
Bse8I GATNNNNATC 3 cut(s) 608, 754, 1004
BseAI TCCGGA 2 cut(s) 561, 752
BseBI CCWGG 1 cut(s) 1102
BseDI CCNNGG 1 cut(s) 1101
BseGI GGATG 3 cut(s) 254, 733, 868
BseJI GATNNNNATC 3 cut(s) 608, 754, 1004
BseLI CCNNNNNNNGG 3 cut(s) 59, 179, 1033
BseMI GCAATG 1 cut(s) 504
BseMII CTCAG 2 cut(s) 127, 1057
BseNI ACTGG 4 cut(s) 294, 546, 878, 964
BseXI GCAGC 2 cut(s) 273, 799
BshFI GGCC 1 cut(s) 963
BshNI GGYRCC 1 cut(s) 1036
BsiSI CCGG 2 cut(s) 562, 753
BslFI GGGAC 1 cut(s) 250
BslI CCNNNNNNNGG 3 cut(s) 59, 179, 1033
BsmFI GGGAC 1 cut(s) 250
BsnI GGCC 1 cut(s) 963
Bsp13I TCCGGA 2 cut(s) 561, 752
Bsp143I GATC 4 cut(s) 426, 749, 755, 852
BspACI CCGC 2 cut(s) 92, 860
BspANI GGCC 1 cut(s) 963
BspCNI CTCAG 2 cut(s) 126, 1056
BspEI TCCGGA 2 cut(s) 561, 752
BspLI GGNNCC 4 cut(s) 51, 428, 988, 1038
BspMAI CTGCAG 1 cut(s) 263
BspPI GGATC 4 cut(s) 421, 434, 744, 763
BspT107I GGYRCC 1 cut(s) 1036
BsrDI GCAATG 1 cut(s) 504
BsrI ACTGG 4 cut(s) 294, 546, 878, 964
BssECI CCNNGG 1 cut(s) 1101
BssMI GATC 4 cut(s) 426, 749, 755, 852
Bst2UI CCWGG 1 cut(s) 1102
Bst4CI ACNGT 3 cut(s) 352, 391, 655
Bst6I CTCTTC 1 cut(s) 1064
BstC8I GCNNGC 2 cut(s) 455, 697
BstDEI CTNAG 2 cut(s) 113, 1043
BstEII GGTNACC 1 cut(s) 502
BstF5I GGATG 3 cut(s) 254, 733, 868
BstKTI GATC 4 cut(s) 429, 752, 758, 855
BstMBI GATC 4 cut(s) 426, 749, 755, 852
BstNI CCWGG 1 cut(s) 1102
BstNSI RCATGY 3 cut(s) 457, 472, 559
BstPAI GACNNNNGTC 1 cut(s) 202
BstPI GGTNACC 1 cut(s) 502
BstSCI CCNGG 1 cut(s) 1100
BstSFI CTRYAG 3 cut(s) 259, 654, 973
BstV1I GCAGC 2 cut(s) 273, 799
BstX2I RGATCY 3 cut(s) 426, 749, 755
BstXI CCANNNNNNTGG 1 cut(s) 885
BstYI RGATCY 3 cut(s) 426, 749, 755
BsuRI GGCC 1 cut(s) 963
BtsCI GGATG 3 cut(s) 254, 733, 868
BtsI GCAGTG 1 cut(s) 631
BtsIMutI CAGTG 5 cut(s) 121, 320, 539, 631, 885
Cac8I GCNNGC 2 cut(s) 455, 697
Cfr13I GGNCC 3 cut(s) 49, 221, 962
Csp6I GTAC 2 cut(s) 348, 742
CviJI RGCY 6 cut(s) 372, 400, 699, 902, 930, 963
CviKI_1 RGCY 6 cut(s) 372, 400, 699, 902, 930, 963
CviQI GTAC 2 cut(s) 348, 742
DdeI CTNAG 2 cut(s) 113, 1043
DpnI GATC 4 cut(s) 428, 751, 757, 854
DpnII GATC 4 cut(s) 426, 749, 755, 852
Eam1104I CTCTTC 1 cut(s) 1064
EarI CTCTTC 1 cut(s) 1064
Eco32I GATATC 1 cut(s) 640
Eco47I GGWCC 2 cut(s) 49, 221
Eco57I CTGAAG 2 cut(s) 533, 1045
Eco91I GGTNACC 1 cut(s) 502
EcoO109I RGGNCCY 1 cut(s) 49
EcoO65I GGTNACC 1 cut(s) 502
EcoRII CCWGG 1 cut(s) 1100
EcoRV GATATC 1 cut(s) 640
FaqI GGGAC 1 cut(s) 250
FbaI TGATCA 1 cut(s) 852
FblI GTMKAC 1 cut(s) 1048
Fnu4HI GCNGC 2 cut(s) 262, 813
FokI GGATG 3 cut(s) 241, 740, 875
Fsp4HI GCNGC 2 cut(s) 262, 813
FspBI CTAG 1 cut(s) 903
GluI GCNGC 2 cut(s) 262, 813
GsuI CTGGAG 1 cut(s) 399
HaeIII GGCC 1 cut(s) 963
HapII CCGG 2 cut(s) 562, 753
HinfI GANTC 5 cut(s) 109, 136, 574, 720, 1000
HpaII CCGG 2 cut(s) 562, 753
HphI GGTGA 2 cut(s) 164, 514
Hpy166II GTNNAC 3 cut(s) 588, 744, 1049
Hpy188I TCNGA 5 cut(s) 10, 174, 513, 579, 603
Hpy188III TCNNGA 6 cut(s) 219, 378, 424, 562, 753, 820
Hpy8I GTNNAC 3 cut(s) 588, 744, 1049
HpyAV CCTTC 1 cut(s) 826
HpyCH4III ACNGT 3 cut(s) 352, 391, 655
HpyCH4V TGCA 6 cut(s) 249, 261, 311, 497, 684, 896
HpyF3I CTNAG 2 cut(s) 113, 1043
Kpn2I TCCGGA 2 cut(s) 561, 752
Ksp22I TGATCA 1 cut(s) 852
Kzo9I GATC 4 cut(s) 426, 749, 755, 852
LmnI GCTCC 1 cut(s) 94
Lsp1109I GCAGC 2 cut(s) 273, 799
MaeI CTAG 1 cut(s) 903
MaeIII GTNAC 7 cut(s) 116, 152, 176, 296, 385, 502, 520
MalI GATC 4 cut(s) 428, 751, 757, 854
MboI GATC 4 cut(s) 426, 749, 755, 852
MboII GAAGA 4 cut(s) 111, 436, 526, 1051
MfeI CAATTG 1 cut(s) 403
MflI RGATCY 3 cut(s) 426, 749, 755
MluCI AATT 9 cut(s) 42, 337, 354, 403, 482, 548, 671, 679, 790
MlyI GAGTC 2 cut(s) 103, 729
MnlI CCTC 6 cut(s) 16, 40, 125, 234, 1050, 1067
MroI TCCGGA 2 cut(s) 561, 752
MseI TTAA 6 cut(s) 30, 417, 435, 533, 870, 992
MslI CAYNNNNRTG 3 cut(s) 198, 452, 938
MspI CCGG 2 cut(s) 562, 753
MspR9I CCNGG 1 cut(s) 1102
MunI CAATTG 1 cut(s) 403
MvaI CCWGG 1 cut(s) 1102
NdeII GATC 4 cut(s) 426, 749, 755, 852
NlaIV GGNNCC 4 cut(s) 51, 428, 988, 1038
NmuCI GTSAC 5 cut(s) 116, 152, 176, 502, 520
NspI RCATGY 3 cut(s) 457, 472, 559
PaeI GCATGC 1 cut(s) 457
PciI ACATGT 1 cut(s) 555
PfeI GAWTC 3 cut(s) 136, 574, 1000
PflMI CCANNNNNTGG 1 cut(s) 59
PkrI GCNGC 2 cut(s) 263, 814
PleI GAGTC 2 cut(s) 103, 728
PpsI GAGTC 2 cut(s) 103, 728
PpuMI RGGWCCY 1 cut(s) 49
PscI ACATGT 1 cut(s) 555
PshAI GACNNNNGTC 1 cut(s) 202
Psp5II RGGWCCY 1 cut(s) 49
Psp6I CCWGG 1 cut(s) 1100
PspEI GGTNACC 1 cut(s) 502
PspGI CCWGG 1 cut(s) 1100
PspN4I GGNNCC 4 cut(s) 51, 428, 988, 1038
PspPI GGNCC 3 cut(s) 49, 221, 962
PspPPI RGGWCCY 1 cut(s) 49
PstI CTGCAG 1 cut(s) 263
PsuI RGATCY 3 cut(s) 426, 749, 755
RsaI GTAC 2 cut(s) 349, 743
RsaNI GTAC 2 cut(s) 348, 742
RseI CAYNNNNRTG 3 cut(s) 198, 452, 938
SaqAI TTAA 6 cut(s) 30, 417, 435, 533, 870, 992
SatI GCNGC 2 cut(s) 262, 813
Sau3AI GATC 4 cut(s) 426, 749, 755, 852
Sau96I GGNCC 3 cut(s) 49, 221, 962
ScaI AGTACT 1 cut(s) 349
SchI GAGTC 2 cut(s) 103, 729
ScrFI CCNGG 1 cut(s) 1102
SfcI CTRYAG 3 cut(s) 259, 654, 973
SinI GGWCC 2 cut(s) 49, 221
SmiMI CAYNNNNRTG 3 cut(s) 198, 452, 938
SphI GCATGC 1 cut(s) 457
Sse9I AATT 9 cut(s) 42, 337, 354, 403, 482, 548, 671, 679, 790
SsiI CCGC 2 cut(s) 92, 860
SspI AATATT 4 cut(s) 85, 493, 529, 1092
SspMI CTAG 1 cut(s) 903
StyD4I CCNGG 1 cut(s) 1100
TaaI ACNGT 3 cut(s) 352, 391, 655
TaqI TCGA 1 cut(s) 139
TasI AATT 9 cut(s) 42, 337, 354, 403, 482, 548, 671, 679, 790
TatI WGTACW 2 cut(s) 347, 741
TfiI GAWTC 3 cut(s) 136, 574, 1000
Tru1I TTAA 6 cut(s) 30, 417, 435, 533, 870, 992
Tru9I TTAA 6 cut(s) 30, 417, 435, 533, 870, 992
TscAI CASTG 5 cut(s) 121, 327, 546, 631, 885
TseFI GTSAC 5 cut(s) 116, 152, 176, 502, 520
TseI GCWGC 2 cut(s) 261, 812
Tsp45I GTSAC 5 cut(s) 116, 152, 176, 502, 520
TspDTI ATGAA 7 cut(s) 54, 201, 243, 436, 744, 780, 852
TspGWI ACGGA 1 cut(s) 195
TspRI CASTG 5 cut(s) 121, 327, 546, 631, 885
Van91I CCANNNNNTGG 1 cut(s) 59
VpaK11BI GGWCC 2 cut(s) 49, 221
XapI RAATTY 2 cut(s) 337, 482
XceI RCATGY 3 cut(s) 457, 472, 559
XcmI CCANNNNNNNNNTGG 1 cut(s) 976
XmiI GTMKAC 1 cut(s) 1048
XspI CTAG 1 cut(s) 903
ZrmI AGTACT 1 cut(s) 349
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.