Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000005

Orthogroup ID

OG0004958

Physical Location & Seq

Genomic Coordinates Reverse (-)

54068595 .. 54073346

Gene Structure 4752 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug05G0394200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 312 bp

ATGTCTTCAGGCGAAGAAGTCTCTTCGGTTTCAAAGCGTACCTTATCGTGCTCCACCTGCTTTGACGCTCTCTGGTTTTGCTATTTTCATCAGATGCAGCAATATTATAGGCTTGGGACACTTGATAACTGTGGTGGGAAATGGAGTGCTCTTGTGGATTGTTTAACTTTGAAGACGAAGCGGTCAGCTGAAGTGCAGGAAATTTTGGAGTCTCGTGAGAAAGCCAAGGCTCACATCTGGACTTTTCGAACCCCAGAAGAAGCATCAAGTAATTGGAAAGAACAATTTGGACATTTAGATGAAATGGAATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000981 GO:0000988 GO:0000989 GO:0001067 GO:0001076 GO:0001134 GO:0001135 GO:0003006 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0006357 GO:0006935 GO:0007275 GO:0008150 GO:0009553 GO:0009605 GO:0009856 GO:0009889 GO:0010183 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0022414 GO:0031323 GO:0031326 GO:0032501 GO:0032502 GO:0040011 GO:0042221 GO:0042330 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0044212 GO:0044424 GO:0044464 GO:0044706 GO:0045595 GO:0045691 GO:0045697 GO:0048229 GO:0048856 GO:0048868 GO:0050789 GO:0050793 GO:0050794 GO:0050896 GO:0050918 GO:0051171 GO:0051239 GO:0051252 GO:0051704 GO:0060255 GO:0065007 GO:0080090 GO:0097159 GO:0140110 GO:1901363 GO:1903506 GO:2000026 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Myb_DNA-binding

Protein Analysis

103

Amino Acids

11.94

Weight (kDa)

5.61

Isoelectric Point (pI)

55.8

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PANTS-like	PF11326	14 - 77	7.7e-16	Synaptic plasticity regulator PANTS-like

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0004958)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G11050 AT5G58850
fragaria_vesca	FvH4_3g38310 FvH4_3g38320
malus_domestica	MD03G1073100.v1.1 MD11G1079000.v1.1
prunus_persica	Prupe.6G059700_v2.0.a1
pyrus_communis	pycom03g05910
rosa_chinensis	RchiOBHm_Chr5g0068891 RchiOBHm_Chr7g0211831
rosa_laevigata	RLG00000002962 RLG00000036017
rosa_multiflora	Rmu_sc0009005.1_g000013 Rmu_sc0013825.1_g000001 Rmu_sc0016160.1_g000005 Rmu_ssc0000378.1_g000003
rosa_roxburghii	Rroxscaffold_1G00011840 Rroxscaffold_3G00247400
rosa_rugosa	Rorug05G0394200 Rorug07G0129000
rosa_samantha	Rh5AG451300 Rh5BG470000 Rh5CG492500 Rh5DG483100 Rh7AG261700 Rh7BG255300 Rh7CG278300 Rh7DG268300
rosa_wichuraiana	Rw5G042150 Rw7G022320

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	65
AasI	GACNNNNNNGTC	1 cut(s)	181
Acc36I	ACCTGC	1 cut(s)	65
AciI	CCGC	1 cut(s)	181
AcsI	RAATTY	1 cut(s)	201
AcuI	CTGAAG	1 cut(s)	210
AfaI	GTAC	1 cut(s)	40
AgsI	TTSAA	2 cut(s)	33, 172
AluBI	AGCT	1 cut(s)	188
AluI	AGCT	1 cut(s)	188
Alw21I	GWGCWC	2 cut(s)	53, 151
Alw26I	GTCTC	2 cut(s)	25, 216
ApeKI	GCWGC	1 cut(s)	97
ApoI	RAATTY	1 cut(s)	201
AsuII	TTCGAA	1 cut(s)	247
BauI	CACGAG	1 cut(s)	213
BbsI	GAAGAC	1 cut(s)	179
Bbv12I	GWGCWC	2 cut(s)	53, 151
BbvI	GCAGC	1 cut(s)	109
BcoDI	GTCTC	2 cut(s)	25, 216
BfuAI	ACCTGC	1 cut(s)	65
BisI	GCNGC	1 cut(s)	98
BlsI	GCNGC	1 cut(s)	99
BmsI	GCATC	2 cut(s)	84, 272
BpiI	GAAGAC	1 cut(s)	179
Bpu14I	TTCGAA	1 cut(s)	247
BsaJI	CCNNGG	1 cut(s)	225
BseDI	CCNNGG	1 cut(s)	225
BseXI	GCAGC	1 cut(s)	109
BsgI	GTGCAG	1 cut(s)	215
BsiHKAI	GWGCWC	2 cut(s)	53, 151
BslFI	GGGAC	1 cut(s)	130
BsmAI	GTCTC	2 cut(s)	25, 216
BsmFI	GGGAC	1 cut(s)	130
Bsp119I	TTCGAA	1 cut(s)	247
Bsp1286I	GDGCHC	2 cut(s)	53, 151
BspACI	CCGC	1 cut(s)	181
BspMI	ACCTGC	1 cut(s)	65
BspT104I	TTCGAA	1 cut(s)	247
BssECI	CCNNGG	1 cut(s)	225
BssSI	CACGAG	1 cut(s)	213
BssT1I	CCWWGG	1 cut(s)	225
Bst2BI	CACGAG	1 cut(s)	213
Bst4CI	ACNGT	1 cut(s)	131
Bst6I	CTCTTC	1 cut(s)	28
BstBI	TTCGAA	1 cut(s)	247
BstMAI	GTCTC	2 cut(s)	25, 216
BstMWI	GCNNNNNNNGC	1 cut(s)	57
BstV1I	GCAGC	1 cut(s)	109
BstV2I	GAAGAC	1 cut(s)	179
BveI	ACCTGC	1 cut(s)	65
CseI	GACGC	1 cut(s)	74
Csp6I	GTAC	1 cut(s)	39
CspCI	CAANNNNNGTGG	2 cut(s)	43, 78
CviJI	RGCY	4 cut(s)	112, 188, 224, 230
CviKI_1	RGCY	4 cut(s)	112, 188, 224, 230
CviQI	GTAC	1 cut(s)	39
DrdI	GACNNNNNNGTC	1 cut(s)	181
DseDI	GACNNNNNNGTC	1 cut(s)	181
Eam1104I	CTCTTC	1 cut(s)	28
EarI	CTCTTC	1 cut(s)	28
Eco130I	CCWWGG	1 cut(s)	225
Eco57I	CTGAAG	1 cut(s)	210
EcoT14I	CCWWGG	1 cut(s)	225
ErhI	CCWWGG	1 cut(s)	225
FaiI	YATR	1 cut(s)	108
FalI	AAGNNNNNCTT	2 cut(s)	26, 58
FaqI	GGGAC	1 cut(s)	130
Fnu4HI	GCNGC	1 cut(s)	98
Fsp4HI	GCNGC	1 cut(s)	98
GluI	GCNGC	1 cut(s)	98
HgaI	GACGC	1 cut(s)	74
HinfI	GANTC	1 cut(s)	209
Hpy188I	TCNGA	1 cut(s)	93
Hpy188III	TCNNGA	2 cut(s)	215, 238
HpyCH4III	ACNGT	1 cut(s)	131
HpyCH4V	TGCA	2 cut(s)	97, 196
HpyF10VI	GCNNNNNNNGC	1 cut(s)	57
LmnI	GCTCC	1 cut(s)	56
LpnPI	CCDG	5 cut(s)	58, 70, 182, 223, 267
Lsp1109I	GCAGC	1 cut(s)	109
LweI	GCATC	2 cut(s)	84, 272
MboII	GAAGA	4 cut(s)	15, 26, 184, 269
MhlI	GDGCHC	2 cut(s)	53, 151
MluCI	AATT	3 cut(s)	201, 271, 284
MlyI	GAGTC	1 cut(s)	218
MseI	TTAA	1 cut(s)	164
MslI	CAYNNNNRTG	1 cut(s)	297
MspA1I	CMGCKG	1 cut(s)	188
MwoI	GCNNNNNNNGC	1 cut(s)	57
NspV	TTCGAA	1 cut(s)	247
PaqCI	CACCTGC	1 cut(s)	65
PkrI	GCNGC	1 cut(s)	99
PleI	GAGTC	1 cut(s)	217
PpsI	GAGTC	1 cut(s)	217
PvuII	CAGCTG	1 cut(s)	188
RsaI	GTAC	1 cut(s)	40
RsaNI	GTAC	1 cut(s)	39
RseI	CAYNNNNRTG	1 cut(s)	297
SaqAI	TTAA	1 cut(s)	164
SatI	GCNGC	1 cut(s)	98
SchI	GAGTC	1 cut(s)	218
SduI	GDGCHC	2 cut(s)	53, 151
SetI	ASST	3 cut(s)	44, 59, 190
SfaNI	GCATC	2 cut(s)	84, 272
SfuI	TTCGAA	1 cut(s)	247
SmiMI	CAYNNNNRTG	1 cut(s)	297
Sse9I	AATT	3 cut(s)	201, 271, 284
SsiI	CCGC	1 cut(s)	181
SspI	AATATT	1 cut(s)	104
StyI	CCWWGG	1 cut(s)	225
TaaI	ACNGT	1 cut(s)	131
TaqI	TCGA	1 cut(s)	247
TasI	AATT	3 cut(s)	201, 271, 284
Tru1I	TTAA	1 cut(s)	164
Tru9I	TTAA	1 cut(s)	164
TseI	GCWGC	1 cut(s)	97
TspDTI	ATGAA	1 cut(s)	77
XapI	RAATTY	1 cut(s)	201

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.