Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr7D

Orthogroup ID

OG0004958

Physical Location & Seq

Genomic Coordinates Forward (+)

28645062 .. 28648474

Gene Structure 3413 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh7DG268300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 999 bp

ATGGAAGGACAAGATGGTGCTGCTTCTGATCATCTTCACCATCATCAAGGTGTTTATGGCATTCGAAACAATCACATACAAAATCCTCATCAGCATCACAACCAACTCTTCAAGCCTGGTCCTCCGTTGACAGCCATAGACAGGTTCCTGTGGTCTCAAAACAATGCAAAGAACAAAGAGAGGATCATCTCCTCAAATGGGTTTTCCTCATTTGGTGGGGCTATGGGTGATCTGCATGCTTGTTCGAATTGGCCGCCGAGTAGTCTCGGAGAGACTAGCTTGGATGAACTGCTTTTTCTTGATCATGGTGAGGCCATGACTTGGCCTCCAGAGAAAATTCAAAACCCTAACATGGGGTTCAAAGAAGATCAAGTGAAGGTGGGTTCTAAAGGGGTGGGAAAGAGAGCTAAAACGGGTTCATCTGTGCCTTTAATCAAAGGACAGTGGACAGATGAAGAAGACAGAAAGCTGATGAGATTGGTGAAGCAATATGGAGTGACGAAATGGGCACAGATAGCTGAGAAGCTTGTAGGTAGAGCTGGGAAGCAATGTAGAGAAAGGTGGCATAATCATTTGCGCCCTGATATCAAGAACTTCTTCAACAACAACAATAATGTTGACAATCATAATCATCAGCAGCAGCAGCCATTACCCATCCACGATTACAATAATGACCTTACTGCAAGTCCAATGGATACTACTCATGAGCTTGTCACTTCAACTCCAAAACCAAACATGTACACCAACGGAAACTTCCAAGCAGCTGTTAACAATATCGAATCCATCGAGAATTCTACAGAAGACCCGCAATCCATTAATCCCCCTACTACCCATCTCAGTTCTGATCTCTACCTCTCTTACCTCTTAAATGGAGGAGCCGGTTCATCATCATCTTCCGCGAATCATGATCATCATATGGGAAGTGAAAACTGCAAACAGCAAAAGCAAGATGCATACATAGTCAAGAGAAACAAAGCTTCGAGTGAAATACAAAAGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000981 GO:0000988 GO:0000989 GO:0001067 GO:0001076 GO:0001134 GO:0001135 GO:0003006 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0006357 GO:0006935 GO:0007275 GO:0008150 GO:0009553 GO:0009605 GO:0009856 GO:0009889 GO:0010183 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0022414 GO:0031323 GO:0031326 GO:0032501 GO:0032502 GO:0040011 GO:0042221 GO:0042330 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0044212 GO:0044424 GO:0044464 GO:0044706 GO:0045595 GO:0045691 GO:0045697 GO:0048229 GO:0048856 GO:0048868 GO:0050789 GO:0050793 GO:0050794 GO:0050896 GO:0050918 GO:0051171 GO:0051239 GO:0051252 GO:0051704 GO:0060255 GO:0065007 GO:0080090 GO:0097159 GO:0140110 GO:1901363 GO:1903506 GO:2000026 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Myb_DNA-binding

Protein Analysis

332

Amino Acids

37.17

Weight (kDa)

6.85

Isoelectric Point (pI)

38.95

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Myb_DNA-binding	PF00249	146 - 192	2.9e-17	Myb-like DNA-binding domain
Myb_DNA-bind_6	PF13921	149 - 198	4.8e-16	Myb-like DNA-binding domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0004958)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G11050 AT5G58850
fragaria_vesca	FvH4_3g38310 FvH4_3g38320
malus_domestica	MD03G1073100.v1.1 MD11G1079000.v1.1
prunus_persica	Prupe.6G059700_v2.0.a1
pyrus_communis	pycom03g05910
rosa_chinensis	RchiOBHm_Chr5g0068891 RchiOBHm_Chr7g0211831
rosa_laevigata	RLG00000002962 RLG00000036017
rosa_multiflora	Rmu_sc0009005.1_g000013 Rmu_sc0013825.1_g000001 Rmu_sc0016160.1_g000005 Rmu_ssc0000378.1_g000003
rosa_roxburghii	Rroxscaffold_1G00011840 Rroxscaffold_3G00247400
rosa_rugosa	Rorug05G0394200 Rorug07G0129000
rosa_samantha	Rh5AG451300 Rh5BG470000 Rh5CG492500 Rh5DG483100 Rh7AG261700 Rh7BG255300 Rh7CG278300 Rh7DG268300
rosa_wichuraiana	Rw5G042150 Rw7G022320

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	321
AccII	CGCG	1 cut(s)	899
AciI	CCGC	3 cut(s)	254, 806, 897
AclWI	GGATC	1 cut(s)	191
AcoI	YGGCCR	1 cut(s)	251
AcsI	RAATTY	2 cut(s)	336, 790
AfaI	GTAC	1 cut(s)	740
AfiI	CCNNNNNNNGG	5 cut(s)	141, 198, 321, 352, 353
AflIII	ACRYGT	1 cut(s)	735
AgsI	TTSAA	5 cut(s)	112, 341, 361, 601, 720
AjnI	CCWGG	1 cut(s)	115
AjuI	GAANNNNNNNTTGG	2 cut(s)	737, 769
AluBI	AGCT	9 cut(s)	279, 407, 469, 518, 526, 539, 709, 764, 977
AluI	AGCT	9 cut(s)	279, 407, 469, 518, 526, 539, 709, 764, 977
Alw26I	GTCTC	3 cut(s)	159, 266, 269
AlwI	GGATC	1 cut(s)	191
AoxI	GGCC	3 cut(s)	251, 312, 323
ApeKI	GCWGC	5 cut(s)	20, 637, 640, 643, 761
ApoI	RAATTY	2 cut(s)	336, 790
AseI	ATTAAT	1 cut(s)	816
Asp700I	GAANNNNTTC	1 cut(s)	596
AspLEI	GCGC	1 cut(s)	579
AspS9I	GGNCC	1 cut(s)	119
AsuHPI	GGTGA	4 cut(s)	29, 239, 320, 493
AsuII	TTCGAA	2 cut(s)	64, 245
AvaII	GGWCC	1 cut(s)	119
BaeGI	GKGCMC	1 cut(s)	511
BbsI	GAAGAC	2 cut(s)	465, 807
BbvI	GCAGC	5 cut(s)	7, 649, 652, 655, 773
BccI	CCATC	5 cut(s)	8, 48, 662, 791, 840
BciT130I	CCWGG	1 cut(s)	117
BciVI	GTATCC	1 cut(s)	688
BclI	TGATCA	3 cut(s)	28, 301, 907
BcoDI	GTCTC	3 cut(s)	159, 266, 269
BfaI	CTAG	1 cut(s)	276
BfmI	CTRYAG	1 cut(s)	795
BfuI	GTATCC	1 cut(s)	688
BisI	GCNGC	6 cut(s)	21, 254, 638, 641, 644, 762
BlsI	GCNGC	6 cut(s)	22, 255, 639, 642, 645, 763
Bme1390I	CCNGG	1 cut(s)	117
Bme18I	GGWCC	1 cut(s)	119
BmgT120I	GGNCC	1 cut(s)	119
BmiI	GGNNCC	2 cut(s)	146, 877
BmrFI	CCNGG	1 cut(s)	117
BmsI	GCATC	2 cut(s)	103, 940
BpiI	GAAGAC	2 cut(s)	465, 807
BpmI	CTGGAG	1 cut(s)	312
Bpu14I	TTCGAA	2 cut(s)	64, 245
BsaI	GGTCTC	1 cut(s)	159
BsaXI	ACNNNNNCTCC	4 cut(s)	310, 340, 706, 736
Bsc4I	CCNNNNNNNGG	5 cut(s)	141, 198, 321, 352, 353
Bse118I	RCCGGY	1 cut(s)	878
Bse3DI	GCAATG	1 cut(s)	554
BseBI	CCWGG	1 cut(s)	117
BseGI	GGATG	2 cut(s)	289, 654
BseLI	CCNNNNNNNGG	5 cut(s)	141, 198, 321, 352, 353
BseMI	GCAATG	1 cut(s)	554
BseMII	CTCAG	2 cut(s)	510, 850
BseRI	GAGGAG	2 cut(s)	181, 888
BseSI	GKGCMC	1 cut(s)	511
BseXI	GCAGC	5 cut(s)	7, 649, 652, 655, 773
BseYI	CCCAGC	1 cut(s)	539
Bsh1236I	CGCG	1 cut(s)	899
BshFI	GGCC	3 cut(s)	253, 314, 325
BsiSI	CCGG	1 cut(s)	879
BslI	CCNNNNNNNGG	5 cut(s)	141, 198, 321, 352, 353
BsmAI	GTCTC	3 cut(s)	159, 266, 269
BsmI	GAATGC	1 cut(s)	60
BsnI	GGCC	3 cut(s)	253, 314, 325
Bso31I	GGTCTC	1 cut(s)	159
Bsp119I	TTCGAA	2 cut(s)	64, 245
Bsp1286I	GDGCHC	1 cut(s)	511
Bsp1407I	TGTACA	1 cut(s)	738
Bsp143I	GATC	7 cut(s)	28, 183, 229, 301, 367, 844, 907
BspACI	CCGC	3 cut(s)	254, 806, 897
BspANI	GGCC	3 cut(s)	253, 314, 325
BspCNI	CTCAG	2 cut(s)	511, 849
BspFNI	CGCG	1 cut(s)	899
BspHI	TCATGA	2 cut(s)	703, 904
BspLI	GGNNCC	2 cut(s)	146, 877
BspPI	GGATC	1 cut(s)	191
BspT104I	TTCGAA	2 cut(s)	64, 245
BspTNI	GGTCTC	1 cut(s)	159
BsrDI	GCAATG	1 cut(s)	554
BsrFI	RCCGGY	1 cut(s)	878
BsrGI	TGTACA	1 cut(s)	738
BssAI	RCCGGY	1 cut(s)	878
BssMI	GATC	7 cut(s)	28, 183, 229, 301, 367, 844, 907
Bst2UI	CCWGG	1 cut(s)	117
Bst4CI	ACNGT	1 cut(s)	444
Bst6I	CTCTTC	1 cut(s)	113
BstAUI	TGTACA	1 cut(s)	738
BstBI	TTCGAA	2 cut(s)	64, 245
BstC8I	GCNNGC	1 cut(s)	237
BstDEI	CTNAG	2 cut(s)	519, 836
BstF5I	GGATG	2 cut(s)	289, 654
BstFNI	CGCG	1 cut(s)	899
BstHHI	GCGC	1 cut(s)	579
BstKTI	GATC	7 cut(s)	31, 186, 232, 304, 370, 847, 910
BstMAI	GTCTC	3 cut(s)	159, 266, 269
BstMBI	GATC	7 cut(s)	28, 183, 229, 301, 367, 844, 907
BstMWI	GCNNNNNNNGC	2 cut(s)	515, 643
BstNI	CCWGG	1 cut(s)	117
BstNSI	RCATGY	2 cut(s)	239, 739
BstSCI	CCNGG	1 cut(s)	115
BstSFI	CTRYAG	1 cut(s)	795
BstSLI	GKGCMC	1 cut(s)	511
BstUI	CGCG	1 cut(s)	899
BstV1I	GCAGC	5 cut(s)	7, 649, 652, 655, 773
BstV2I	GAAGAC	2 cut(s)	465, 807
BsuI	GTATCC	1 cut(s)	688
BsuRI	GGCC	3 cut(s)	253, 314, 325
BtsCI	GGATG	2 cut(s)	289, 654
BtsIMutI	CAGTG	1 cut(s)	449
Cac8I	GCNNGC	1 cut(s)	237
CciI	TCATGA	2 cut(s)	703, 904
CfoI	GCGC	1 cut(s)	579
Cfr10I	RCCGGY	1 cut(s)	878
Cfr13I	GGNCC	1 cut(s)	119
Csp6I	GTAC	1 cut(s)	739
CviAII	CATG	7 cut(s)	236, 305, 316, 352, 704, 736, 905
CviQI	GTAC	1 cut(s)	739
DdeI	CTNAG	2 cut(s)	519, 836
DpnI	GATC	7 cut(s)	30, 185, 231, 303, 369, 846, 909
DpnII	GATC	7 cut(s)	28, 183, 229, 301, 367, 844, 907
EaeI	YGGCCR	1 cut(s)	251
Eam1104I	CTCTTC	1 cut(s)	113
EarI	CTCTTC	1 cut(s)	113
Eco31I	GGTCTC	1 cut(s)	159
Eco32I	GATATC	1 cut(s)	586
Eco47I	GGWCC	1 cut(s)	119
EcoRI	GAATTC	1 cut(s)	790
EcoRII	CCWGG	1 cut(s)	115
EcoRV	GATATC	1 cut(s)	586
EcoT22I	ATGCAT	1 cut(s)	955
FaeI	CATG	7 cut(s)	239, 308, 319, 355, 707, 739, 908
FalI	AAGNNNNNCTT	2 cut(s)	581, 613
FatI	CATG	7 cut(s)	235, 304, 315, 351, 703, 735, 904
FauI	CCCGC	1 cut(s)	813
FauNDI	CATATG	1 cut(s)	915
FbaI	TGATCA	3 cut(s)	28, 301, 907
Fnu4HI	GCNGC	6 cut(s)	21, 254, 638, 641, 644, 762
FokI	GGATG	2 cut(s)	296, 641
Fsp4HI	GCNGC	6 cut(s)	21, 254, 638, 641, 644, 762
FspBI	CTAG	1 cut(s)	276
GlaI	GCGC	1 cut(s)	578
GluI	GCNGC	6 cut(s)	21, 254, 638, 641, 644, 762
GsaI	CCCAGC	1 cut(s)	543
GsuI	CTGGAG	1 cut(s)	312
HaeIII	GGCC	3 cut(s)	253, 314, 325
HapII	CCGG	1 cut(s)	879
HhaI	GCGC	1 cut(s)	579
Hin1II	CATG	7 cut(s)	239, 308, 319, 355, 707, 739, 908
Hin6I	GCGC	1 cut(s)	577
HinP1I	GCGC	1 cut(s)	577
HincII	GTYRAC	3 cut(s)	129, 619, 769
HindII	GTYRAC	3 cut(s)	129, 619, 769
HindIII	AAGCTT	2 cut(s)	524, 975
HinfI	GANTC	2 cut(s)	779, 901
HpaI	GTTAAC	1 cut(s)	769
HpaII	CCGG	1 cut(s)	879
HphI	GGTGA	4 cut(s)	29, 239, 320, 493
Hpy166II	GTNNAC	5 cut(s)	129, 447, 619, 741, 769
Hpy188I	TCNGA	3 cut(s)	28, 269, 844
Hpy188III	TCNNGA	7 cut(s)	299, 329, 589, 704, 787, 905, 964
Hpy8I	GTNNAC	5 cut(s)	129, 447, 619, 741, 769
HpyAV	CCTTC	1 cut(s)	370
HpyCH4III	ACNGT	1 cut(s)	444
HpyCH4V	TGCA	5 cut(s)	167, 235, 683, 933, 953
HpyF10VI	GCNNNNNNNGC	2 cut(s)	515, 643
HpyF3I	CTNAG	2 cut(s)	519, 836
Hsp92II	CATG	7 cut(s)	239, 308, 319, 355, 707, 739, 908
HspAI	GCGC	1 cut(s)	577
Ksp22I	TGATCA	3 cut(s)	28, 301, 907
KspAI	GTTAAC	1 cut(s)	769
Kzo9I	GATC	7 cut(s)	28, 183, 229, 301, 367, 844, 907
LmnI	GCTCC	1 cut(s)	875
LpnPI	CCDG	8 cut(s)	102, 127, 129, 161, 342, 525, 594, 892
Lsp1109I	GCAGC	5 cut(s)	7, 649, 652, 655, 773
LweI	GCATC	2 cut(s)	103, 940
MaeI	CTAG	1 cut(s)	276
MaeIII	GTNAC	2 cut(s)	496, 712
MalI	GATC	7 cut(s)	30, 185, 231, 303, 369, 846, 909
MboI	GATC	7 cut(s)	28, 183, 229, 301, 367, 844, 907
MboII	GAAGA	8 cut(s)	26, 100, 377, 467, 470, 589, 812, 885
MhlI	GDGCHC	1 cut(s)	511
MluCI	AATT	3 cut(s)	247, 336, 790
Mph1103I	ATGCAT	1 cut(s)	955
MroXI	GAANNNNTTC	1 cut(s)	596
MseI	TTAA	4 cut(s)	431, 768, 816, 866
MslI	CAYNNNNRTG	1 cut(s)	48
MspA1I	CMGCKG	1 cut(s)	764
MspI	CCGG	1 cut(s)	879
MspR9I	CCNGG	1 cut(s)	117
Mva1269I	GAATGC	1 cut(s)	60
MvaI	CCWGG	1 cut(s)	117
MvnI	CGCG	1 cut(s)	899
MwoI	GCNNNNNNNGC	2 cut(s)	515, 643
NdeI	CATATG	1 cut(s)	915
NdeII	GATC	7 cut(s)	28, 183, 229, 301, 367, 844, 907
NlaIII	CATG	7 cut(s)	239, 308, 319, 355, 707, 739, 908
NlaIV	GGNNCC	2 cut(s)	146, 877
NmeAIII	GCCGAG	1 cut(s)	282
NmuCI	GTSAC	2 cut(s)	496, 712
NsiI	ATGCAT	1 cut(s)	955
NspI	RCATGY	2 cut(s)	239, 739
NspV	TTCGAA	2 cut(s)	64, 245
PaeI	GCATGC	1 cut(s)	239
PagI	TCATGA	2 cut(s)	703, 904
PciI	ACATGT	1 cut(s)	735
PcsI	WCGNNNNNNNCGW	1 cut(s)	783
PctI	GAATGC	1 cut(s)	60
PdmI	GAANNNNTTC	1 cut(s)	596
PfeI	GAWTC	2 cut(s)	779, 901
PflMI	CCANNNNNTGG	1 cut(s)	321
PkrI	GCNGC	6 cut(s)	22, 255, 639, 642, 645, 763
PscI	ACATGT	1 cut(s)	735
PshBI	ATTAAT	1 cut(s)	816
Psp6I	CCWGG	1 cut(s)	115
PspFI	CCCAGC	1 cut(s)	539
PspGI	CCWGG	1 cut(s)	115
PspN4I	GGNNCC	2 cut(s)	146, 877
PspPI	GGNCC	1 cut(s)	119
PvuII	CAGCTG	1 cut(s)	764
RsaI	GTAC	1 cut(s)	740
RsaNI	GTAC	1 cut(s)	739
RseI	CAYNNNNRTG	1 cut(s)	48
SaqAI	TTAA	4 cut(s)	431, 768, 816, 866
SatI	GCNGC	6 cut(s)	21, 254, 638, 641, 644, 762
Sau3AI	GATC	7 cut(s)	28, 183, 229, 301, 367, 844, 907
Sau96I	GGNCC	1 cut(s)	119
ScrFI	CCNGG	1 cut(s)	117
SduI	GDGCHC	1 cut(s)	511
SfaNI	GCATC	2 cut(s)	103, 940
SfcI	CTRYAG	1 cut(s)	795
SfuI	TTCGAA	2 cut(s)	64, 245
SinI	GGWCC	1 cut(s)	119
SmiMI	CAYNNNNRTG	1 cut(s)	48
SphI	GCATGC	1 cut(s)	239
Sse9I	AATT	3 cut(s)	247, 336, 790
SsiI	CCGC	3 cut(s)	254, 806, 897
SspMI	CTAG	1 cut(s)	276
StyD4I	CCNGG	1 cut(s)	115
TaaI	ACNGT	1 cut(s)	444
TaqI	TCGA	5 cut(s)	64, 245, 777, 786, 980
TasI	AATT	3 cut(s)	247, 336, 790
TatI	WGTACW	1 cut(s)	738
TauI	GCSGC	1 cut(s)	256
TfiI	GAWTC	2 cut(s)	779, 901
Tru1I	TTAA	4 cut(s)	431, 768, 816, 866
Tru9I	TTAA	4 cut(s)	431, 768, 816, 866
TscAI	CASTG	1 cut(s)	449
TseFI	GTSAC	2 cut(s)	496, 712
TseI	GCWGC	5 cut(s)	20, 637, 640, 643, 761
Tsp45I	GTSAC	2 cut(s)	496, 712
TspDTI	ATGAA	4 cut(s)	300, 408, 468, 873
TspGWI	ACGGA	2 cut(s)	114, 762
TspRI	CASTG	1 cut(s)	449
Van91I	CCANNNNNTGG	1 cut(s)	321
VpaK11BI	GGWCC	1 cut(s)	119
VspI	ATTAAT	1 cut(s)	816
XapI	RAATTY	2 cut(s)	336, 790
XceI	RCATGY	2 cut(s)	239, 739
XmnI	GAANNNNTTC	1 cut(s)	596
XspI	CTAG	1 cut(s)	276
Zsp2I	ATGCAT	1 cut(s)	955

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.