Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr7C

Orthogroup ID

OG0004958

Physical Location & Seq

Genomic Coordinates Forward (+)

28060797 .. 28063488

Gene Structure 2692 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh7CG278300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 945 bp

ATGGAAGGAGAAGATGGTGCTGCTTCTGATCATCTTCACCATCATCACGGTGTTTATGGCATTCGAAACAATCACATACAAAATCCTCATCAGCATCACAACCAACTCTTCAAGCCTGGTCCTCCGTTGACAGCCATAGACAGGTTCCTGTGGTCTCAAAACAATGCAAAGAACAAAGAGAGGATCATCTCCTCAAATGGGTTTTCCTCATTTGGTGGGGGCCGTGGGGCAATGGGTGATCTGCATGCTTGTTCGAATTGGCCGCCGAGTAGTCTAGGAGAGACTAGCTTGGATGAACTGCTTTTTCTTGATCATGGTGAGGCCATGACTTGGCCTCCAGAGAAAATTCAAAACCCTAACATGGGGTTCAAAGAAGATCAAGTGAAGGTGGGCTCTAAAGGGGTGGGAAAGAGAGCTAAAACGGGTTCATCTGTGCCTTTAATCAAAGGACAGTGGACAGATGAAGAAGACAGAAAGCTGATGAGATTGGTGAAGCAATATGGAGTGACGAAATGGGCACAGATAGCTGAGAAGCTTGTAGGTAGAGCTGGGAAGCAATGTAGAGAAAGGTGGCATAATCATTTGCGCCCTGATATCAAGAACTTCTTCAACAACAACAATAATGTTGACAATCATAATCATCATCAGCAGCAGCAGCCATTACCCATCCACGATTACAATAATGACCTTACTGCAAGTCCAATGGATACTACTCATGAGCTTGTCACTTCAACTCCAAAACCAAACATGTACACCAACGGAAACTTCCAAGCAGCTGTTAACAATATCGAATCCATCGAGAATTCTACAGAAGACCCCCAATCCATTAATCCCCCTACTACCCATCTCAGTTCTGATCTCTACCTCTCTTACCTCTTAAATGGAGGAGCCGGTTCATCATCATCTTCCGCGAATCATGATCATCATATGGAAACAAAGGAGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000981 GO:0000988 GO:0000989 GO:0001067 GO:0001076 GO:0001134 GO:0001135 GO:0003006 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0006357 GO:0006935 GO:0007275 GO:0008150 GO:0009553 GO:0009605 GO:0009856 GO:0009889 GO:0010183 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0022414 GO:0031323 GO:0031326 GO:0032501 GO:0032502 GO:0040011 GO:0042221 GO:0042330 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0044212 GO:0044424 GO:0044464 GO:0044706 GO:0045595 GO:0045691 GO:0045697 GO:0048229 GO:0048856 GO:0048868 GO:0050789 GO:0050793 GO:0050794 GO:0050896 GO:0050918 GO:0051171 GO:0051239 GO:0051252 GO:0051704 GO:0060255 GO:0065007 GO:0080090 GO:0097159 GO:0140110 GO:1901363 GO:1903506 GO:2000026 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Myb_DNA-binding

Protein Analysis

314

Amino Acids

35.12

Weight (kDa)

6.41

Isoelectric Point (pI)

33.24

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Myb_DNA-binding	PF00249	149 - 195	2.7e-17	Myb-like DNA-binding domain
Myb_DNA-bind_6	PF13921	152 - 201	4.4e-16	Myb-like DNA-binding domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0004958)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G11050 AT5G58850
fragaria_vesca	FvH4_3g38310 FvH4_3g38320
malus_domestica	MD03G1073100.v1.1 MD11G1079000.v1.1
prunus_persica	Prupe.6G059700_v2.0.a1
pyrus_communis	pycom03g05910
rosa_chinensis	RchiOBHm_Chr5g0068891 RchiOBHm_Chr7g0211831
rosa_laevigata	RLG00000002962 RLG00000036017
rosa_multiflora	Rmu_sc0009005.1_g000013 Rmu_sc0013825.1_g000001 Rmu_sc0016160.1_g000005 Rmu_ssc0000378.1_g000003
rosa_roxburghii	Rroxscaffold_1G00011840 Rroxscaffold_3G00247400
rosa_rugosa	Rorug05G0394200 Rorug07G0129000
rosa_samantha	Rh5AG451300 Rh5BG470000 Rh5CG492500 Rh5DG483100 Rh7AG261700 Rh7BG255300 Rh7CG278300 Rh7DG268300
rosa_wichuraiana	Rw5G042150 Rw7G022320

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	330
AccII	CGCG	1 cut(s)	911
AciI	CCGC	2 cut(s)	263, 909
AclWI	GGATC	1 cut(s)	191
AcoI	YGGCCR	1 cut(s)	260
AcsI	RAATTY	2 cut(s)	345, 802
AfaI	GTAC	1 cut(s)	752
AfiI	CCNNNNNNNGG	5 cut(s)	141, 198, 330, 361, 362
AflIII	ACRYGT	1 cut(s)	747
AgsI	TTSAA	5 cut(s)	112, 350, 370, 610, 732
AjnI	CCWGG	1 cut(s)	115
AjuI	GAANNNNNNNTTGG	2 cut(s)	749, 781
AluBI	AGCT	8 cut(s)	288, 416, 478, 527, 535, 548, 721, 776
AluI	AGCT	8 cut(s)	288, 416, 478, 527, 535, 548, 721, 776
Alw26I	GTCTC	2 cut(s)	159, 275
AlwI	GGATC	1 cut(s)	191
AoxI	GGCC	4 cut(s)	220, 260, 321, 332
ApeKI	GCWGC	5 cut(s)	20, 649, 652, 655, 773
ApoI	RAATTY	2 cut(s)	345, 802
AseI	ATTAAT	1 cut(s)	828
Asp700I	GAANNNNTTC	1 cut(s)	605
AspLEI	GCGC	1 cut(s)	588
AspS9I	GGNCC	2 cut(s)	119, 220
AsuHPI	GGTGA	4 cut(s)	29, 248, 329, 502
AsuII	TTCGAA	2 cut(s)	64, 254
AvaII	GGWCC	1 cut(s)	119
BaeGI	GKGCMC	1 cut(s)	520
BanII	GRGCYC	1 cut(s)	395
BbsI	GAAGAC	2 cut(s)	474, 819
BbvI	GCAGC	5 cut(s)	7, 661, 664, 667, 785
BccI	CCATC	5 cut(s)	8, 48, 674, 803, 852
BceAI	ACGGC	1 cut(s)	207
BciT130I	CCWGG	1 cut(s)	117
BciVI	GTATCC	1 cut(s)	700
BclI	TGATCA	3 cut(s)	28, 310, 919
BcoDI	GTCTC	2 cut(s)	159, 275
BfaI	CTAG	2 cut(s)	275, 285
BfmI	CTRYAG	1 cut(s)	807
BfuI	GTATCC	1 cut(s)	700
BisI	GCNGC	6 cut(s)	21, 263, 650, 653, 656, 774
BlsI	GCNGC	6 cut(s)	22, 264, 651, 654, 657, 775
Bme1390I	CCNGG	1 cut(s)	117
Bme18I	GGWCC	1 cut(s)	119
BmgT120I	GGNCC	2 cut(s)	119, 220
BmiI	GGNNCC	3 cut(s)	146, 221, 889
BmrFI	CCNGG	1 cut(s)	117
BmsI	GCATC	1 cut(s)	103
BpiI	GAAGAC	2 cut(s)	474, 819
BpmI	CTGGAG	1 cut(s)	321
Bpu14I	TTCGAA	2 cut(s)	64, 254
BsaI	GGTCTC	1 cut(s)	159
BsaJI	CCNNGG	1 cut(s)	223
BsaXI	ACNNNNNCTCC	4 cut(s)	319, 349, 718, 748
Bsc4I	CCNNNNNNNGG	5 cut(s)	141, 198, 330, 361, 362
Bse118I	RCCGGY	1 cut(s)	890
Bse3DI	GCAATG	2 cut(s)	237, 563
BseBI	CCWGG	1 cut(s)	117
BseDI	CCNNGG	1 cut(s)	223
BseGI	GGATG	2 cut(s)	298, 666
BseLI	CCNNNNNNNGG	5 cut(s)	141, 198, 330, 361, 362
BseMI	GCAATG	2 cut(s)	237, 563
BseMII	CTCAG	2 cut(s)	519, 862
BseRI	GAGGAG	2 cut(s)	181, 900
BseSI	GKGCMC	1 cut(s)	520
BseXI	GCAGC	5 cut(s)	7, 661, 664, 667, 785
BseYI	CCCAGC	1 cut(s)	548
Bsh1236I	CGCG	1 cut(s)	911
BshFI	GGCC	4 cut(s)	222, 262, 323, 334
BsiSI	CCGG	1 cut(s)	891
BslI	CCNNNNNNNGG	5 cut(s)	141, 198, 330, 361, 362
BsmAI	GTCTC	2 cut(s)	159, 275
BsmI	GAATGC	1 cut(s)	60
BsnI	GGCC	4 cut(s)	222, 262, 323, 334
Bso31I	GGTCTC	1 cut(s)	159
Bsp119I	TTCGAA	2 cut(s)	64, 254
Bsp1286I	GDGCHC	2 cut(s)	395, 520
Bsp1407I	TGTACA	1 cut(s)	750
Bsp143I	GATC	7 cut(s)	28, 183, 238, 310, 376, 856, 919
BspACI	CCGC	2 cut(s)	263, 909
BspANI	GGCC	4 cut(s)	222, 262, 323, 334
BspCNI	CTCAG	2 cut(s)	520, 861
BspFNI	CGCG	1 cut(s)	911
BspHI	TCATGA	2 cut(s)	715, 916
BspLI	GGNNCC	3 cut(s)	146, 221, 889
BspPI	GGATC	1 cut(s)	191
BspT104I	TTCGAA	2 cut(s)	64, 254
BspTNI	GGTCTC	1 cut(s)	159
BsrDI	GCAATG	2 cut(s)	237, 563
BsrFI	RCCGGY	1 cut(s)	890
BsrGI	TGTACA	1 cut(s)	750
BssAI	RCCGGY	1 cut(s)	890
BssECI	CCNNGG	1 cut(s)	223
BssMI	GATC	7 cut(s)	28, 183, 238, 310, 376, 856, 919
Bst2UI	CCWGG	1 cut(s)	117
Bst4CI	ACNGT	2 cut(s)	50, 453
Bst6I	CTCTTC	1 cut(s)	113
BstAUI	TGTACA	1 cut(s)	750
BstBI	TTCGAA	2 cut(s)	64, 254
BstC8I	GCNNGC	1 cut(s)	246
BstDEI	CTNAG	2 cut(s)	528, 848
BstDSI	CCRYGG	1 cut(s)	223
BstF5I	GGATG	2 cut(s)	298, 666
BstFNI	CGCG	1 cut(s)	911
BstHHI	GCGC	1 cut(s)	588
BstKTI	GATC	7 cut(s)	31, 186, 241, 313, 379, 859, 922
BstMAI	GTCTC	2 cut(s)	159, 275
BstMBI	GATC	7 cut(s)	28, 183, 238, 310, 376, 856, 919
BstMWI	GCNNNNNNNGC	2 cut(s)	524, 655
BstNI	CCWGG	1 cut(s)	117
BstNSI	RCATGY	2 cut(s)	248, 751
BstSCI	CCNGG	1 cut(s)	115
BstSFI	CTRYAG	1 cut(s)	807
BstSLI	GKGCMC	1 cut(s)	520
BstUI	CGCG	1 cut(s)	911
BstV1I	GCAGC	5 cut(s)	7, 661, 664, 667, 785
BstV2I	GAAGAC	2 cut(s)	474, 819
BsuI	GTATCC	1 cut(s)	700
BsuRI	GGCC	4 cut(s)	222, 262, 323, 334
BtgI	CCRYGG	1 cut(s)	223
BtsCI	GGATG	2 cut(s)	298, 666
BtsIMutI	CAGTG	1 cut(s)	458
Cac8I	GCNNGC	1 cut(s)	246
CciI	TCATGA	2 cut(s)	715, 916
CfoI	GCGC	1 cut(s)	588
Cfr10I	RCCGGY	1 cut(s)	890
Cfr13I	GGNCC	2 cut(s)	119, 220
Csp6I	GTAC	1 cut(s)	751
CviAII	CATG	7 cut(s)	245, 314, 325, 361, 716, 748, 917
CviQI	GTAC	1 cut(s)	751
DdeI	CTNAG	2 cut(s)	528, 848
DpnI	GATC	7 cut(s)	30, 185, 240, 312, 378, 858, 921
DpnII	GATC	7 cut(s)	28, 183, 238, 310, 376, 856, 919
EaeI	YGGCCR	1 cut(s)	260
Eam1104I	CTCTTC	1 cut(s)	113
EarI	CTCTTC	1 cut(s)	113
Eco24I	GRGCYC	1 cut(s)	395
Eco31I	GGTCTC	1 cut(s)	159
Eco32I	GATATC	1 cut(s)	595
Eco47I	GGWCC	1 cut(s)	119
EcoRI	GAATTC	1 cut(s)	802
EcoRII	CCWGG	1 cut(s)	115
EcoRV	GATATC	1 cut(s)	595
EcoT38I	GRGCYC	1 cut(s)	395
FaeI	CATG	7 cut(s)	248, 317, 328, 364, 719, 751, 920
FalI	AAGNNNNNCTT	2 cut(s)	590, 622
FatI	CATG	7 cut(s)	244, 313, 324, 360, 715, 747, 916
FauNDI	CATATG	1 cut(s)	927
FbaI	TGATCA	3 cut(s)	28, 310, 919
Fnu4HI	GCNGC	6 cut(s)	21, 263, 650, 653, 656, 774
FokI	GGATG	2 cut(s)	305, 653
FriOI	GRGCYC	1 cut(s)	395
Fsp4HI	GCNGC	6 cut(s)	21, 263, 650, 653, 656, 774
FspBI	CTAG	2 cut(s)	275, 285
GlaI	GCGC	1 cut(s)	587
GluI	GCNGC	6 cut(s)	21, 263, 650, 653, 656, 774
GsaI	CCCAGC	1 cut(s)	552
GsuI	CTGGAG	1 cut(s)	321
HaeIII	GGCC	4 cut(s)	222, 262, 323, 334
HapII	CCGG	1 cut(s)	891
HhaI	GCGC	1 cut(s)	588
Hin1II	CATG	7 cut(s)	248, 317, 328, 364, 719, 751, 920
Hin6I	GCGC	1 cut(s)	586
HinP1I	GCGC	1 cut(s)	586
HincII	GTYRAC	3 cut(s)	129, 628, 781
HindII	GTYRAC	3 cut(s)	129, 628, 781
HindIII	AAGCTT	1 cut(s)	533
HinfI	GANTC	2 cut(s)	791, 913
HpaI	GTTAAC	1 cut(s)	781
HpaII	CCGG	1 cut(s)	891
HphI	GGTGA	4 cut(s)	29, 248, 329, 502
Hpy166II	GTNNAC	5 cut(s)	129, 456, 628, 753, 781
Hpy188I	TCNGA	2 cut(s)	28, 856
Hpy188III	TCNNGA	6 cut(s)	308, 338, 598, 716, 799, 917
Hpy8I	GTNNAC	5 cut(s)	129, 456, 628, 753, 781
HpyAV	CCTTC	1 cut(s)	379
HpyCH4III	ACNGT	2 cut(s)	50, 453
HpyCH4V	TGCA	3 cut(s)	167, 244, 695
HpyF10VI	GCNNNNNNNGC	2 cut(s)	524, 655
HpyF3I	CTNAG	2 cut(s)	528, 848
Hsp92II	CATG	7 cut(s)	248, 317, 328, 364, 719, 751, 920
HspAI	GCGC	1 cut(s)	586
Ksp22I	TGATCA	3 cut(s)	28, 310, 919
KspAI	GTTAAC	1 cut(s)	781
Kzo9I	GATC	7 cut(s)	28, 183, 238, 310, 376, 856, 919
LmnI	GCTCC	1 cut(s)	887
LpnPI	CCDG	8 cut(s)	102, 127, 129, 161, 351, 534, 603, 904
Lsp1109I	GCAGC	5 cut(s)	7, 661, 664, 667, 785
LweI	GCATC	1 cut(s)	103
MaeI	CTAG	2 cut(s)	275, 285
MaeIII	GTNAC	2 cut(s)	505, 724
MalI	GATC	7 cut(s)	30, 185, 240, 312, 378, 858, 921
MboI	GATC	7 cut(s)	28, 183, 238, 310, 376, 856, 919
MboII	GAAGA	9 cut(s)	23, 26, 100, 386, 476, 479, 598, 824, 897
MhlI	GDGCHC	2 cut(s)	395, 520
MluCI	AATT	3 cut(s)	256, 345, 802
MroXI	GAANNNNTTC	1 cut(s)	605
MseI	TTAA	4 cut(s)	440, 780, 828, 878
MslI	CAYNNNNRTG	1 cut(s)	48
MspA1I	CMGCKG	1 cut(s)	776
MspI	CCGG	1 cut(s)	891
MspR9I	CCNGG	1 cut(s)	117
Mva1269I	GAATGC	1 cut(s)	60
MvaI	CCWGG	1 cut(s)	117
MvnI	CGCG	1 cut(s)	911
MwoI	GCNNNNNNNGC	2 cut(s)	524, 655
NdeI	CATATG	1 cut(s)	927
NdeII	GATC	7 cut(s)	28, 183, 238, 310, 376, 856, 919
NlaIII	CATG	7 cut(s)	248, 317, 328, 364, 719, 751, 920
NlaIV	GGNNCC	3 cut(s)	146, 221, 889
NmeAIII	GCCGAG	1 cut(s)	291
NmuCI	GTSAC	2 cut(s)	505, 724
NspI	RCATGY	2 cut(s)	248, 751
NspV	TTCGAA	2 cut(s)	64, 254
PaeI	GCATGC	1 cut(s)	248
PagI	TCATGA	2 cut(s)	715, 916
PciI	ACATGT	1 cut(s)	747
PcsI	WCGNNNNNNNCGW	1 cut(s)	795
PctI	GAATGC	1 cut(s)	60
PdmI	GAANNNNTTC	1 cut(s)	605
PfeI	GAWTC	2 cut(s)	791, 913
PflMI	CCANNNNNTGG	1 cut(s)	330
PkrI	GCNGC	6 cut(s)	22, 264, 651, 654, 657, 775
PscI	ACATGT	1 cut(s)	747
PshBI	ATTAAT	1 cut(s)	828
Psp6I	CCWGG	1 cut(s)	115
PspFI	CCCAGC	1 cut(s)	548
PspGI	CCWGG	1 cut(s)	115
PspN4I	GGNNCC	3 cut(s)	146, 221, 889
PspPI	GGNCC	2 cut(s)	119, 220
PvuII	CAGCTG	1 cut(s)	776
RsaI	GTAC	1 cut(s)	752
RsaNI	GTAC	1 cut(s)	751
RseI	CAYNNNNRTG	1 cut(s)	48
SaqAI	TTAA	4 cut(s)	440, 780, 828, 878
SatI	GCNGC	6 cut(s)	21, 263, 650, 653, 656, 774
Sau3AI	GATC	7 cut(s)	28, 183, 238, 310, 376, 856, 919
Sau96I	GGNCC	2 cut(s)	119, 220
ScrFI	CCNGG	1 cut(s)	117
SduI	GDGCHC	2 cut(s)	395, 520
SfaNI	GCATC	1 cut(s)	103
SfcI	CTRYAG	1 cut(s)	807
SfuI	TTCGAA	2 cut(s)	64, 254
SinI	GGWCC	1 cut(s)	119
SmiMI	CAYNNNNRTG	1 cut(s)	48
SphI	GCATGC	1 cut(s)	248
Sse9I	AATT	3 cut(s)	256, 345, 802
SsiI	CCGC	2 cut(s)	263, 909
SspMI	CTAG	2 cut(s)	275, 285
StyD4I	CCNGG	1 cut(s)	115
TaaI	ACNGT	2 cut(s)	50, 453
TaqI	TCGA	4 cut(s)	64, 254, 789, 798
TasI	AATT	3 cut(s)	256, 345, 802
TatI	WGTACW	1 cut(s)	750
TauI	GCSGC	1 cut(s)	265
TfiI	GAWTC	2 cut(s)	791, 913
Tru1I	TTAA	4 cut(s)	440, 780, 828, 878
Tru9I	TTAA	4 cut(s)	440, 780, 828, 878
TscAI	CASTG	1 cut(s)	458
TseFI	GTSAC	2 cut(s)	505, 724
TseI	GCWGC	5 cut(s)	20, 649, 652, 655, 773
Tsp45I	GTSAC	2 cut(s)	505, 724
TspDTI	ATGAA	4 cut(s)	309, 417, 477, 885
TspGWI	ACGGA	2 cut(s)	114, 774
TspRI	CASTG	1 cut(s)	458
Van91I	CCANNNNNTGG	1 cut(s)	330
VpaK11BI	GGWCC	1 cut(s)	119
VspI	ATTAAT	1 cut(s)	828
XapI	RAATTY	2 cut(s)	345, 802
XceI	RCATGY	2 cut(s)	248, 751
XmnI	GAANNNNTTC	1 cut(s)	605
XspI	CTAG	2 cut(s)	275, 285

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.