Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0004958

Physical Location & Seq

Genomic Coordinates Forward (+)

29018027 .. 29019708

Gene Structure 1682 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ18951

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1020 bp

ATGGAAGGAGAAGATGGTGCTGCTTCTGATCATCTTCACCATCATCACGGTGTTTATGGCATTCGAAACAATCACATACAAAATCCTCATCAGCATCACAACCAACTCTTCAAGCCTGGTCCTCCGTTGACAGCCATAGACAGGTTCCTGTGGTCTCAAAACAATGCAAAGAACAAAGAGAGGATCATCTCCTCAAATGGGTTTTCCTCATTTGGTGGGGCAATGGGTGATCTGCATGCTTGTTCGAATTGGCCGCCGAGTAGTCTCGGAGAGACTAGCTTGGATGAACTGCTTTTTCTTGATCATGGTGAGGCCATGACTTGGCCTCCAGAGAAAATTCAAAACCCTAACATGGGGTTCAAAGAAGATCAAGTGAAGGTGGGCTCTAAAGGGGTGGGAAAGAGAGCTAAAACGGGTTCATCTGTGCCTTTAATCAAAGGACAGTGGACAGATGAAGAAGACAGAAAGCTGATGAGATTGGTGAAGCAATATGGAGTGACGAAATGGGCACAGATAGCTGAGAAGCTTGTAGGTAGAGCTGGGAAGCAATGTAGAGAAAGGTGGCATAATCATTTGCGCCCTGATATCAAGAAAGATAGTTGGACTGAAGAGGAAGAGAAGATATTAGTGGAAGTTCATGCTGAGGTTGGAAACCGCTGGGCAGAGATTGCTAAACGCATTCCGGGAAGAACCGAAAATGCCATTAAGAATCATTGGAATGCTACAAAAAGGAGGCAGAATTCAAGGAGAAAGAACAAACAGACATATACCAAAAATGGACCATCATCATCAAATAAGCCTCCTCAACCTTCCATACTTCAAAACTACATAAGAAGCAAGATATTCAATAACAAAGCCAACAACAACTCTTCTTCCAATGCTCCCCCTACCCCAAGCAACATCAGCACCACTACCCCTACCAGCCCCTCCAATCTCACCCAGGAAGAACCTTCAAAATCCCCTTCAATATTTTGCTCTCGGACCCATCGGATTTATCTAGTTGTGAACACTCTCCATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000981 GO:0000988 GO:0000989 GO:0001067 GO:0001076 GO:0001134 GO:0001135 GO:0003006 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0006357 GO:0006935 GO:0007275 GO:0008150 GO:0009553 GO:0009605 GO:0009856 GO:0009889 GO:0010183 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0022414 GO:0031323 GO:0031326 GO:0032501 GO:0032502 GO:0040011 GO:0042221 GO:0042330 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0044212 GO:0044424 GO:0044464 GO:0044706 GO:0045595 GO:0045691 GO:0045697 GO:0048229 GO:0048856 GO:0048868 GO:0050789 GO:0050793 GO:0050794 GO:0050896 GO:0050918 GO:0051171 GO:0051239 GO:0051252 GO:0051704 GO:0060255 GO:0065007 GO:0080090 GO:0097159 GO:0140110 GO:1901363 GO:1903506 GO:2000026 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Myb_DNA-binding

Protein Analysis

339

Amino Acids

38.3

Weight (kDa)

9.72

Isoelectric Point (pI)

50.14

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Myb_DNA-binding	PF00249	146 - 192	3e-17	Myb-like DNA-binding domain
Myb_DNA-bind_6	PF13921	149 - 206	2.3e-20	Myb-like DNA-binding domain
Myb_DNA-binding	PF00249	198 - 240	1.1e-16	Myb-like DNA-binding domain
Myb_DNA-bind_6	PF13921	201 - 246	1.8e-09	Myb-like DNA-binding domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0004958)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G11050 AT5G58850
fragaria_vesca	FvH4_3g38310 FvH4_3g38320
malus_domestica	MD03G1073100.v1.1 MD11G1079000.v1.1
prunus_persica	Prupe.6G059700_v2.0.a1
pyrus_communis	pycom03g05910
rosa_chinensis	RchiOBHm_Chr5g0068891 RchiOBHm_Chr7g0211831
rosa_laevigata	RLG00000002962 RLG00000036017
rosa_multiflora	Rmu_sc0009005.1_g000013 Rmu_sc0013825.1_g000001 Rmu_sc0016160.1_g000005 Rmu_ssc0000378.1_g000003
rosa_roxburghii	Rroxscaffold_1G00011840 Rroxscaffold_3G00247400
rosa_rugosa	Rorug05G0394200 Rorug07G0129000
rosa_samantha	Rh5AG451300 Rh5BG470000 Rh5CG492500 Rh5DG483100 Rh7AG261700 Rh7BG255300 Rh7CG278300 Rh7DG268300
rosa_wichuraiana	Rw5G042150 Rw7G022320

Restriction Enzyme Sites

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Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	321
AciI	CCGC	2 cut(s)	254, 655
AclWI	GGATC	1 cut(s)	191
AcoI	YGGCCR	1 cut(s)	251
AcsI	RAATTY	2 cut(s)	336, 739
AcuI	CTGAAG	1 cut(s)	627
AfiI	CCNNNNNNNGG	5 cut(s)	141, 198, 321, 352, 353
AgsI	TTSAA	8 cut(s)	112, 341, 361, 744, 821, 847, 954, 966
AjnI	CCWGG	2 cut(s)	115, 939
AluBI	AGCT	6 cut(s)	279, 407, 469, 518, 526, 539
AluI	AGCT	6 cut(s)	279, 407, 469, 518, 526, 539
Alw26I	GTCTC	3 cut(s)	159, 266, 269
AlwI	GGATC	1 cut(s)	191
AoxI	GGCC	3 cut(s)	251, 312, 323
ApeKI	GCWGC	1 cut(s)	20
ApoI	RAATTY	2 cut(s)	336, 739
AspLEI	GCGC	1 cut(s)	579
AspS9I	GGNCC	3 cut(s)	119, 779, 981
AsuC2I	CCSGG	1 cut(s)	684
AsuHPI	GGTGA	5 cut(s)	29, 239, 320, 493, 928
AsuII	TTCGAA	2 cut(s)	64, 245
AvaII	GGWCC	3 cut(s)	119, 779, 981
BaeGI	GKGCMC	1 cut(s)	511
BanII	GRGCYC	1 cut(s)	386
BbsI	GAAGAC	1 cut(s)	465
BbvCI	CCTCAGC	1 cut(s)	642
BbvI	GCAGC	1 cut(s)	7
BccI	CCATC	4 cut(s)	8, 48, 790, 993
BciT130I	CCWGG	2 cut(s)	117, 941
BclI	TGATCA	2 cut(s)	28, 301
BcnI	CCSGG	1 cut(s)	684
BcoDI	GTCTC	3 cut(s)	159, 266, 269
BfaI	CTAG	2 cut(s)	276, 998
BisI	GCNGC	2 cut(s)	21, 254
BlsI	GCNGC	2 cut(s)	22, 255
Bme1390I	CCNGG	3 cut(s)	117, 684, 941
Bme18I	GGWCC	3 cut(s)	119, 779, 981
BmgT120I	GGNCC	3 cut(s)	119, 779, 981
BmiI	GGNNCC	2 cut(s)	146, 983
BmrFI	CCNGG	3 cut(s)	117, 684, 941
BmsI	GCATC	1 cut(s)	103
BpiI	GAAGAC	1 cut(s)	465
BpmI	CTGGAG	1 cut(s)	312
Bpu10I	CCTNAGC	1 cut(s)	642
Bpu14I	TTCGAA	2 cut(s)	64, 245
BpuMI	CCSGG	1 cut(s)	684
BsaI	GGTCTC	1 cut(s)	159
BsaJI	CCNNGG	1 cut(s)	939
BsaXI	ACNNNNNCTCC	2 cut(s)	310, 340
Bsc4I	CCNNNNNNNGG	5 cut(s)	141, 198, 321, 352, 353
Bse3DI	GCAATG	2 cut(s)	228, 554
BseBI	CCWGG	2 cut(s)	117, 941
BseDI	CCNNGG	1 cut(s)	939
BseGI	GGATG	1 cut(s)	289
BseLI	CCNNNNNNNGG	5 cut(s)	141, 198, 321, 352, 353
BseMI	GCAATG	2 cut(s)	228, 554
BseMII	CTCAG	2 cut(s)	510, 633
BseRI	GAGGAG	2 cut(s)	181, 792
BseSI	GKGCMC	1 cut(s)	511
BseXI	GCAGC	1 cut(s)	7
BseYI	CCCAGC	2 cut(s)	539, 657
BshFI	GGCC	3 cut(s)	253, 314, 325
BsiSI	CCGG	1 cut(s)	683
BslI	CCNNNNNNNGG	5 cut(s)	141, 198, 321, 352, 353
BsmAI	GTCTC	3 cut(s)	159, 266, 269
BsmI	GAATGC	3 cut(s)	60, 678, 724
BsnI	GGCC	3 cut(s)	253, 314, 325
Bso31I	GGTCTC	1 cut(s)	159
Bsp119I	TTCGAA	2 cut(s)	64, 245
Bsp1286I	GDGCHC	2 cut(s)	386, 511
Bsp143I	GATC	5 cut(s)	28, 183, 229, 301, 367
BspACI	CCGC	2 cut(s)	254, 655
BspANI	GGCC	3 cut(s)	253, 314, 325
BspCNI	CTCAG	2 cut(s)	511, 634
BspLI	GGNNCC	2 cut(s)	146, 983
BspPI	GGATC	1 cut(s)	191
BspT104I	TTCGAA	2 cut(s)	64, 245
BspTNI	GGTCTC	1 cut(s)	159
BsrDI	GCAATG	2 cut(s)	228, 554
BssECI	CCNNGG	1 cut(s)	939
BssMI	GATC	5 cut(s)	28, 183, 229, 301, 367
Bst2UI	CCWGG	2 cut(s)	117, 941
Bst4CI	ACNGT	2 cut(s)	50, 444
Bst6I	CTCTTC	4 cut(s)	113, 603, 609, 874
BstAPI	GCANNNNNTGC	1 cut(s)	668
BstBI	TTCGAA	2 cut(s)	64, 245
BstC8I	GCNNGC	1 cut(s)	237
BstDEI	CTNAG	2 cut(s)	519, 642
BstF5I	GGATG	1 cut(s)	289
BstHHI	GCGC	1 cut(s)	579
BstKTI	GATC	5 cut(s)	31, 186, 232, 304, 370
BstMAI	GTCTC	3 cut(s)	159, 266, 269
BstMBI	GATC	5 cut(s)	28, 183, 229, 301, 367
BstMWI	GCNNNNNNNGC	3 cut(s)	515, 668, 903
BstNI	CCWGG	2 cut(s)	117, 941
BstNSI	RCATGY	1 cut(s)	239
BstSCI	CCNGG	3 cut(s)	115, 682, 939
BstSLI	GKGCMC	1 cut(s)	511
BstV1I	GCAGC	1 cut(s)	7
BstV2I	GAAGAC	1 cut(s)	465
BsuRI	GGCC	3 cut(s)	253, 314, 325
BtsCI	GGATG	1 cut(s)	289
BtsIMutI	CAGTG	1 cut(s)	449
Cac8I	GCNNGC	1 cut(s)	237
CfoI	GCGC	1 cut(s)	579
Cfr13I	GGNCC	3 cut(s)	119, 779, 981
CviAII	CATG	5 cut(s)	236, 305, 316, 352, 638
DdeI	CTNAG	2 cut(s)	519, 642
DpnI	GATC	5 cut(s)	30, 185, 231, 303, 369
DpnII	GATC	5 cut(s)	28, 183, 229, 301, 367
EaeI	YGGCCR	1 cut(s)	251
Eam1104I	CTCTTC	4 cut(s)	113, 603, 609, 874
EarI	CTCTTC	4 cut(s)	113, 603, 609, 874
Eco24I	GRGCYC	1 cut(s)	386
Eco31I	GGTCTC	1 cut(s)	159
Eco32I	GATATC	1 cut(s)	586
Eco47I	GGWCC	3 cut(s)	119, 779, 981
Eco57I	CTGAAG	1 cut(s)	627
EcoRI	GAATTC	1 cut(s)	739
EcoRII	CCWGG	2 cut(s)	115, 939
EcoRV	GATATC	1 cut(s)	586
EcoT38I	GRGCYC	1 cut(s)	386
FaeI	CATG	5 cut(s)	239, 308, 319, 355, 641
FatI	CATG	5 cut(s)	235, 304, 315, 351, 637
FbaI	TGATCA	2 cut(s)	28, 301
Fnu4HI	GCNGC	2 cut(s)	21, 254
FokI	GGATG	1 cut(s)	296
FriOI	GRGCYC	1 cut(s)	386
Fsp4HI	GCNGC	2 cut(s)	21, 254
FspBI	CTAG	2 cut(s)	276, 998
GlaI	GCGC	1 cut(s)	578
GluI	GCNGC	2 cut(s)	21, 254
GsaI	CCCAGC	2 cut(s)	543, 661
GsuI	CTGGAG	1 cut(s)	312
HaeIII	GGCC	3 cut(s)	253, 314, 325
HapII	CCGG	1 cut(s)	683
HhaI	GCGC	1 cut(s)	579
Hin1II	CATG	5 cut(s)	239, 308, 319, 355, 641
Hin6I	GCGC	1 cut(s)	577
HinP1I	GCGC	1 cut(s)	577
HincII	GTYRAC	1 cut(s)	129
HindII	GTYRAC	1 cut(s)	129
HindIII	AAGCTT	1 cut(s)	524
HinfI	GANTC	1 cut(s)	709
HpaII	CCGG	1 cut(s)	683
HphI	GGTGA	5 cut(s)	29, 239, 320, 493, 928
Hpy166II	GTNNAC	3 cut(s)	129, 447, 1006
Hpy188I	TCNGA	4 cut(s)	28, 269, 981, 990
Hpy188III	TCNNGA	3 cut(s)	299, 329, 589
Hpy8I	GTNNAC	3 cut(s)	129, 447, 1006
HpyAV	CCTTC	4 cut(s)	370, 819, 960, 972
HpyCH4III	ACNGT	2 cut(s)	50, 444
HpyCH4V	TGCA	2 cut(s)	167, 235
HpyF10VI	GCNNNNNNNGC	3 cut(s)	515, 668, 903
HpyF3I	CTNAG	2 cut(s)	519, 642
Hsp92II	CATG	5 cut(s)	239, 308, 319, 355, 641
HspAI	GCGC	1 cut(s)	577
Ksp22I	TGATCA	2 cut(s)	28, 301
Kzo9I	GATC	5 cut(s)	28, 183, 229, 301, 367
LmnI	GCTCC	1 cut(s)	886
Lsp1109I	GCAGC	1 cut(s)	7
LweI	GCATC	1 cut(s)	103
MaeI	CTAG	2 cut(s)	276, 998
MaeIII	GTNAC	1 cut(s)	496
MalI	GATC	5 cut(s)	30, 185, 231, 303, 369
MboI	GATC	5 cut(s)	28, 183, 229, 301, 367
MhlI	GDGCHC	2 cut(s)	386, 511
MluCI	AATT	3 cut(s)	247, 336, 739
MmeI	TCCRAC	2 cut(s)	581, 628
MseI	TTAA	2 cut(s)	431, 705
MslI	CAYNNNNRTG	2 cut(s)	48, 717
MspA1I	CMGCKG	1 cut(s)	657
MspI	CCGG	1 cut(s)	683
MspR9I	CCNGG	3 cut(s)	117, 684, 941
Mva1269I	GAATGC	3 cut(s)	60, 678, 724
MvaI	CCWGG	2 cut(s)	117, 941
MwoI	GCNNNNNNNGC	3 cut(s)	515, 668, 903
NciI	CCSGG	1 cut(s)	684
NdeII	GATC	5 cut(s)	28, 183, 229, 301, 367
NlaIII	CATG	5 cut(s)	239, 308, 319, 355, 641
NlaIV	GGNNCC	2 cut(s)	146, 983
NmeAIII	GCCGAG	1 cut(s)	282
NmuCI	GTSAC	1 cut(s)	496
NspI	RCATGY	1 cut(s)	239
NspV	TTCGAA	2 cut(s)	64, 245
PaeI	GCATGC	1 cut(s)	239
PctI	GAATGC	3 cut(s)	60, 678, 724
PfeI	GAWTC	1 cut(s)	709
PflMI	CCANNNNNTGG	1 cut(s)	321
PfoI	TCCNGGA	1 cut(s)	682
PkrI	GCNGC	2 cut(s)	22, 255
Psp6I	CCWGG	2 cut(s)	115, 939
PspFI	CCCAGC	2 cut(s)	539, 657
PspGI	CCWGG	2 cut(s)	115, 939
PspN4I	GGNNCC	2 cut(s)	146, 983
PspPI	GGNCC	3 cut(s)	119, 779, 981
RseI	CAYNNNNRTG	2 cut(s)	48, 717
SaqAI	TTAA	2 cut(s)	431, 705
SatI	GCNGC	2 cut(s)	21, 254
Sau3AI	GATC	5 cut(s)	28, 183, 229, 301, 367
Sau96I	GGNCC	3 cut(s)	119, 779, 981
ScrFI	CCNGG	3 cut(s)	117, 684, 941
SduI	GDGCHC	2 cut(s)	386, 511
SfaNI	GCATC	1 cut(s)	103
SfuI	TTCGAA	2 cut(s)	64, 245
SinI	GGWCC	3 cut(s)	119, 779, 981
SmiMI	CAYNNNNRTG	2 cut(s)	48, 717
SphI	GCATGC	1 cut(s)	239
Sse9I	AATT	3 cut(s)	247, 336, 739
SsiI	CCGC	2 cut(s)	254, 655
SspI	AATATT	1 cut(s)	969
SspMI	CTAG	2 cut(s)	276, 998
StyD4I	CCNGG	3 cut(s)	115, 682, 939
TaaI	ACNGT	2 cut(s)	50, 444
TaqI	TCGA	2 cut(s)	64, 245
TasI	AATT	3 cut(s)	247, 336, 739
TauI	GCSGC	1 cut(s)	256
TfiI	GAWTC	1 cut(s)	709
Tru1I	TTAA	2 cut(s)	431, 705
Tru9I	TTAA	2 cut(s)	431, 705
TscAI	CASTG	1 cut(s)	449
TseFI	GTSAC	1 cut(s)	496
TseI	GCWGC	1 cut(s)	20
Tsp45I	GTSAC	1 cut(s)	496
TspDTI	ATGAA	4 cut(s)	300, 408, 468, 626
TspGWI	ACGGA	1 cut(s)	114
TspRI	CASTG	1 cut(s)	449
Van91I	CCANNNNNTGG	1 cut(s)	321
VpaK11BI	GGWCC	3 cut(s)	119, 779, 981
XapI	RAATTY	2 cut(s)	336, 739
XceI	RCATGY	1 cut(s)	239
XspI	CTAG	2 cut(s)	276, 998

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.