Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5A

Orthogroup ID

OG0004958

Physical Location & Seq

Genomic Coordinates Forward (+)

77366764 .. 77371448

Gene Structure 4685 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5AG451300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1020 bp

ATGGAAGGAGAAGATGGTGCTGCTTCTGATCATCTTCACCATCATCATGGTGTTTATGGGTTTCAAAACAATCACATACAAACTCCTCATCAGCATCACAACCAACTCTTCAGGCCTGGTCCTCCGTTGACAGCCATAGACAGGTTCCTGTGGTCTCAAAACAATGCAAAGAACAAAGAGAGACTCGTCTCCTCAAATGGGTTTTCCTCATTTGGTGGTGCAATGGGTGATCTGCAGGCTTGTTCGAATTGGCCGCCGAGTAGTCTCAGAGAGGCTAGCTTGGATGAACTGCTTTTTCTTGATCATGGTGAGGCCATGACTTGGCCTCCAGAGAAAATTCAAAACCCTAACATGGGGTTCAAAGAAGATCAAGTGAAGGTGGGTTCTAAAGGGGTGGGAAAGAAAGCTAAAAAGGGTTCATCTGTGCCTTTAATCAAAGGACAGTGGACAGATGAAGAAGACAGAAAACTGATGAGATTGGTGAAGCAATATGGAGTGAGGAAATGGGCACAGATAGCTGAGAAGCTTGTGGGTAGAGCTGGGAAGCAATGTAGAGAAAGGTGGCATAATCATTTGCGCCCTGATATCAAGAACTTCTTCAACAACAACAATAATGTTCACAATCATAATCAGCAGCAGCAGCCATTACCCATCGACAATTACAATAATGGCCTTACTGCAAATCCAATGGATTCTACTGATTGGTTTGTCACTTCAACTCCAAAACCAAACATGTACACCAACAGAAACTTCCAAGCAGCTGTTCACAATGTAGAATCTCACATCGGGAATTCTACAGAAGACCCGCGATCCATTAATCCCCCTACTACCCATCCCAGTTCTGATCTCTACCTCTCTTACCTCTTAAATGGAGGAGCCAGTTCATCATCATCTTCCGCGAATCATGATCATCATATGGGAGATAGCAGGTATGGAGATTGGAGAAGAATTCACGAAAACAATGTGAAGATGGTATGGGAGGCATGGAATGGGGAAGATGAACGTAGACATAAGGACTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000981 GO:0000988 GO:0000989 GO:0001067 GO:0001076 GO:0001134 GO:0001135 GO:0003006 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0006357 GO:0006935 GO:0007275 GO:0008150 GO:0009553 GO:0009605 GO:0009856 GO:0009889 GO:0010183 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0022414 GO:0031323 GO:0031326 GO:0032501 GO:0032502 GO:0040011 GO:0042221 GO:0042330 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0044212 GO:0044424 GO:0044464 GO:0044706 GO:0045595 GO:0045691 GO:0045697 GO:0048229 GO:0048856 GO:0048868 GO:0050789 GO:0050793 GO:0050794 GO:0050896 GO:0050918 GO:0051171 GO:0051239 GO:0051252 GO:0051704 GO:0060255 GO:0065007 GO:0080090 GO:0097159 GO:0140110 GO:1901363 GO:1903506 GO:2000026 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Myb_DNA-binding

Protein Analysis

339

Amino Acids

38.57

Weight (kDa)

7.4

Isoelectric Point (pI)

39.4

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Myb_DNA-binding	PF00249	146 - 192	3.7e-17	Myb-like DNA-binding domain
Myb_DNA-bind_6	PF13921	149 - 198	3.8e-16	Myb-like DNA-binding domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0004958)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G11050 AT5G58850
fragaria_vesca	FvH4_3g38310 FvH4_3g38320
malus_domestica	MD03G1073100.v1.1 MD11G1079000.v1.1
prunus_persica	Prupe.6G059700_v2.0.a1
pyrus_communis	pycom03g05910
rosa_chinensis	RchiOBHm_Chr5g0068891 RchiOBHm_Chr7g0211831
rosa_laevigata	RLG00000002962 RLG00000036017
rosa_multiflora	Rmu_sc0009005.1_g000013 Rmu_sc0013825.1_g000001 Rmu_sc0016160.1_g000005 Rmu_ssc0000378.1_g000003
rosa_roxburghii	Rroxscaffold_1G00011840 Rroxscaffold_3G00247400
rosa_rugosa	Rorug05G0394200 Rorug07G0129000
rosa_samantha	Rh5AG451300 Rh5BG470000 Rh5CG492500 Rh5DG483100 Rh7AG261700 Rh7BG255300 Rh7CG278300 Rh7DG268300
rosa_wichuraiana	Rw5G042150 Rw7G022320

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	918
AccB7I	CCANNNNNTGG	1 cut(s)	321
AccI	GTMKAC	1 cut(s)	1006
AccII	CGCG	2 cut(s)	808, 899
AciI	CCGC	3 cut(s)	254, 806, 897
AclWI	GGATC	1 cut(s)	804
AcoI	YGGCCR	1 cut(s)	251
AcsI	RAATTY	3 cut(s)	336, 790, 948
AcuI	CTGAAG	1 cut(s)	94
AfaI	GTAC	1 cut(s)	737
AfiI	CCNNNNNNNGG	5 cut(s)	141, 198, 321, 352, 353
AflIII	ACRYGT	1 cut(s)	732
AgsI	TTSAA	5 cut(s)	65, 341, 361, 601, 717
AjnI	CCWGG	1 cut(s)	115
AjuI	GAANNNNNNNTTGG	4 cut(s)	734, 747, 766, 779
AluBI	AGCT	6 cut(s)	279, 407, 518, 526, 539, 761
AluI	AGCT	6 cut(s)	279, 407, 518, 526, 539, 761
Alw26I	GTCTC	4 cut(s)	159, 175, 193, 269
AlwI	GGATC	1 cut(s)	804
AoxI	GGCC	5 cut(s)	113, 251, 312, 323, 670
ApeKI	GCWGC	5 cut(s)	20, 634, 637, 640, 758
ApoI	RAATTY	3 cut(s)	336, 790, 948
AseI	ATTAAT	1 cut(s)	816
Asp700I	GAANNNNTTC	1 cut(s)	596
AspLEI	GCGC	1 cut(s)	579
AspS9I	GGNCC	1 cut(s)	119
AsuHPI	GGTGA	4 cut(s)	29, 239, 320, 493
AsuII	TTCGAA	1 cut(s)	245
AsuNHI	GCTAGC	1 cut(s)	275
AvaII	GGWCC	1 cut(s)	119
BaeGI	GKGCMC	1 cut(s)	511
BbsI	GAAGAC	2 cut(s)	465, 807
BbvI	GCAGC	5 cut(s)	7, 646, 649, 652, 770
BccI	CCATC	5 cut(s)	8, 48, 659, 840, 964
BciT130I	CCWGG	1 cut(s)	117
BclI	TGATCA	3 cut(s)	28, 301, 907
BcoDI	GTCTC	4 cut(s)	159, 175, 193, 269
BfaI	CTAG	2 cut(s)	276, 1018
BfmI	CTRYAG	2 cut(s)	233, 795
BfuAI	ACCTGC	1 cut(s)	918
BisI	GCNGC	6 cut(s)	21, 254, 635, 638, 641, 759
BlsI	GCNGC	6 cut(s)	22, 255, 636, 639, 642, 760
Bme1390I	CCNGG	1 cut(s)	117
Bme18I	GGWCC	1 cut(s)	119
BmgT120I	GGNCC	1 cut(s)	119
BmiI	GGNNCC	2 cut(s)	146, 877
BmrFI	CCNGG	1 cut(s)	117
BmrI	ACTGGG	1 cut(s)	831
BmsI	GCATC	1 cut(s)	103
BmtI	GCTAGC	1 cut(s)	279
BmuI	ACTGGG	1 cut(s)	831
BpiI	GAAGAC	2 cut(s)	465, 807
BpmI	CTGGAG	1 cut(s)	312
Bpu14I	TTCGAA	1 cut(s)	245
BsaI	GGTCTC	1 cut(s)	159
BsaXI	ACNNNNNCTCC	4 cut(s)	310, 340, 703, 733
Bsc4I	CCNNNNNNNGG	5 cut(s)	141, 198, 321, 352, 353
Bse1I	ACTGG	2 cut(s)	837, 879
Bse3DI	GCAATG	2 cut(s)	228, 554
BseBI	CCWGG	1 cut(s)	117
BseGI	GGATG	2 cut(s)	289, 832
BseLI	CCNNNNNNNGG	5 cut(s)	141, 198, 321, 352, 353
BseMI	GCAATG	2 cut(s)	228, 554
BseMII	CTCAG	2 cut(s)	280, 510
BseNI	ACTGG	2 cut(s)	837, 879
BseRI	GAGGAG	3 cut(s)	75, 181, 888
BseSI	GKGCMC	1 cut(s)	511
BseXI	GCAGC	5 cut(s)	7, 646, 649, 652, 770
BseYI	CCCAGC	1 cut(s)	539
Bsh1236I	CGCG	2 cut(s)	808, 899
BshFI	GGCC	5 cut(s)	115, 253, 314, 325, 672
BslI	CCNNNNNNNGG	5 cut(s)	141, 198, 321, 352, 353
BsmAI	GTCTC	4 cut(s)	159, 175, 193, 269
BsmBI	CGTCTC	1 cut(s)	193
BsnI	GGCC	5 cut(s)	115, 253, 314, 325, 672
Bso31I	GGTCTC	1 cut(s)	159
Bsp119I	TTCGAA	1 cut(s)	245
Bsp1286I	GDGCHC	1 cut(s)	511
Bsp1407I	TGTACA	1 cut(s)	735
Bsp143I	GATC	7 cut(s)	28, 229, 301, 367, 809, 844, 907
BspACI	CCGC	3 cut(s)	254, 806, 897
BspANI	GGCC	5 cut(s)	115, 253, 314, 325, 672
BspCNI	CTCAG	2 cut(s)	279, 511
BspFNI	CGCG	2 cut(s)	808, 899
BspHI	TCATGA	1 cut(s)	904
BspLI	GGNNCC	2 cut(s)	146, 877
BspMAI	CTGCAG	1 cut(s)	237
BspMI	ACCTGC	1 cut(s)	918
BspOI	GCTAGC	1 cut(s)	279
BspPI	GGATC	1 cut(s)	804
BspT104I	TTCGAA	1 cut(s)	245
BspTNI	GGTCTC	1 cut(s)	159
BsrDI	GCAATG	2 cut(s)	228, 554
BsrGI	TGTACA	1 cut(s)	735
BsrI	ACTGG	2 cut(s)	837, 879
BssMI	GATC	7 cut(s)	28, 229, 301, 367, 809, 844, 907
Bst2UI	CCWGG	1 cut(s)	117
Bst4CI	ACNGT	1 cut(s)	444
Bst6I	CTCTTC	1 cut(s)	113
BstAUI	TGTACA	1 cut(s)	735
BstBI	TTCGAA	1 cut(s)	245
BstC8I	GCNNGC	2 cut(s)	237, 277
BstDEI	CTNAG	2 cut(s)	266, 519
BstF5I	GGATG	2 cut(s)	289, 832
BstFNI	CGCG	2 cut(s)	808, 899
BstHHI	GCGC	1 cut(s)	579
BstKTI	GATC	7 cut(s)	31, 232, 304, 370, 812, 847, 910
BstMAI	GTCTC	4 cut(s)	159, 175, 193, 269
BstMBI	GATC	7 cut(s)	28, 229, 301, 367, 809, 844, 907
BstMWI	GCNNNNNNNGC	2 cut(s)	515, 640
BstNI	CCWGG	1 cut(s)	117
BstNSI	RCATGY	1 cut(s)	736
BstSCI	CCNGG	1 cut(s)	115
BstSFI	CTRYAG	2 cut(s)	233, 795
BstSLI	GKGCMC	1 cut(s)	511
BstUI	CGCG	2 cut(s)	808, 899
BstV1I	GCAGC	5 cut(s)	7, 646, 649, 652, 770
BstV2I	GAAGAC	2 cut(s)	465, 807
BstXI	CCANNNNNNTGG	1 cut(s)	47
BsuRI	GGCC	5 cut(s)	115, 253, 314, 325, 672
BtsCI	GGATG	2 cut(s)	289, 832
BtsIMutI	CAGTG	1 cut(s)	449
BveI	ACCTGC	1 cut(s)	918
Cac8I	GCNNGC	2 cut(s)	237, 277
CciI	TCATGA	1 cut(s)	904
CfoI	GCGC	1 cut(s)	579
Cfr13I	GGNCC	1 cut(s)	119
Csp6I	GTAC	1 cut(s)	736
CviAII	CATG	7 cut(s)	47, 305, 316, 352, 733, 905, 984
CviQI	GTAC	1 cut(s)	736
DdeI	CTNAG	2 cut(s)	266, 519
DpnI	GATC	7 cut(s)	30, 231, 303, 369, 811, 846, 909
DpnII	GATC	7 cut(s)	28, 229, 301, 367, 809, 844, 907
EaeI	YGGCCR	1 cut(s)	251
Eam1104I	CTCTTC	1 cut(s)	113
EarI	CTCTTC	1 cut(s)	113
Eco147I	AGGCCT	1 cut(s)	115
Eco31I	GGTCTC	1 cut(s)	159
Eco32I	GATATC	1 cut(s)	586
Eco47I	GGWCC	1 cut(s)	119
Eco57I	CTGAAG	1 cut(s)	94
EcoRI	GAATTC	2 cut(s)	790, 948
EcoRII	CCWGG	1 cut(s)	115
EcoRV	GATATC	1 cut(s)	586
Esp3I	CGTCTC	1 cut(s)	193
FaeI	CATG	7 cut(s)	50, 308, 319, 355, 736, 908, 987
FalI	AAGNNNNNCTT	2 cut(s)	581, 613
FatI	CATG	7 cut(s)	46, 304, 315, 351, 732, 904, 983
FauI	CCCGC	1 cut(s)	813
FauNDI	CATATG	1 cut(s)	915
FbaI	TGATCA	3 cut(s)	28, 301, 907
FblI	GTMKAC	1 cut(s)	1006
Fnu4HI	GCNGC	6 cut(s)	21, 254, 635, 638, 641, 759
FokI	GGATG	2 cut(s)	296, 819
Fsp4HI	GCNGC	6 cut(s)	21, 254, 635, 638, 641, 759
FspBI	CTAG	2 cut(s)	276, 1018
GlaI	GCGC	1 cut(s)	578
GluI	GCNGC	6 cut(s)	21, 254, 635, 638, 641, 759
GsaI	CCCAGC	1 cut(s)	543
GsuI	CTGGAG	1 cut(s)	312
HaeIII	GGCC	5 cut(s)	115, 253, 314, 325, 672
HhaI	GCGC	1 cut(s)	579
Hin1II	CATG	7 cut(s)	50, 308, 319, 355, 736, 908, 987
Hin6I	GCGC	1 cut(s)	577
HinP1I	GCGC	1 cut(s)	577
HincII	GTYRAC	1 cut(s)	129
HindII	GTYRAC	1 cut(s)	129
HindIII	AAGCTT	1 cut(s)	524
HinfI	GANTC	4 cut(s)	183, 692, 776, 901
HphI	GGTGA	4 cut(s)	29, 239, 320, 493
Hpy166II	GTNNAC	6 cut(s)	129, 447, 619, 738, 766, 1007
Hpy188I	TCNGA	3 cut(s)	28, 269, 844
Hpy188III	TCNNGA	6 cut(s)	299, 329, 589, 787, 905, 953
Hpy8I	GTNNAC	6 cut(s)	129, 447, 619, 738, 766, 1007
HpyAV	CCTTC	1 cut(s)	370
HpyCH4III	ACNGT	1 cut(s)	444
HpyCH4IV	ACGT	1 cut(s)	1003
HpyCH4V	TGCA	4 cut(s)	167, 221, 235, 680
HpyF10VI	GCNNNNNNNGC	2 cut(s)	515, 640
HpyF3I	CTNAG	2 cut(s)	266, 519
HpySE526I	ACGT	1 cut(s)	1003
Hsp92II	CATG	7 cut(s)	50, 308, 319, 355, 736, 908, 987
HspAI	GCGC	1 cut(s)	577
Ksp22I	TGATCA	3 cut(s)	28, 301, 907
Kzo9I	GATC	7 cut(s)	28, 229, 301, 367, 809, 844, 907
LmnI	GCTCC	1 cut(s)	875
Lsp1109I	GCAGC	5 cut(s)	7, 646, 649, 652, 770
LweI	GCATC	1 cut(s)	103
MaeI	CTAG	2 cut(s)	276, 1018
MaeII	ACGT	1 cut(s)	1003
MaeIII	GTNAC	1 cut(s)	709
MalI	GATC	7 cut(s)	30, 231, 303, 369, 811, 846, 909
MboI	GATC	7 cut(s)	28, 229, 301, 367, 809, 844, 907
MhlI	GDGCHC	1 cut(s)	511
MluCI	AATT	5 cut(s)	247, 336, 658, 790, 948
MlyI	GAGTC	1 cut(s)	177
MroXI	GAANNNNTTC	1 cut(s)	596
MseI	TTAA	3 cut(s)	431, 816, 866
MslI	CAYNNNNRTG	2 cut(s)	45, 48
MspA1I	CMGCKG	1 cut(s)	761
MspR9I	CCNGG	1 cut(s)	117
MvaI	CCWGG	1 cut(s)	117
MvnI	CGCG	2 cut(s)	808, 899
MwoI	GCNNNNNNNGC	2 cut(s)	515, 640
NdeI	CATATG	1 cut(s)	915
NdeII	GATC	7 cut(s)	28, 229, 301, 367, 809, 844, 907
NheI	GCTAGC	1 cut(s)	275
NlaIII	CATG	7 cut(s)	50, 308, 319, 355, 736, 908, 987
NlaIV	GGNNCC	2 cut(s)	146, 877
NmeAIII	GCCGAG	1 cut(s)	282
NmuCI	GTSAC	1 cut(s)	709
NspI	RCATGY	1 cut(s)	736
NspV	TTCGAA	1 cut(s)	245
PagI	TCATGA	1 cut(s)	904
PceI	AGGCCT	1 cut(s)	115
PciI	ACATGT	1 cut(s)	732
PdmI	GAANNNNTTC	1 cut(s)	596
PfeI	GAWTC	3 cut(s)	692, 776, 901
PflMI	CCANNNNNTGG	1 cut(s)	321
PkrI	GCNGC	6 cut(s)	22, 255, 636, 639, 642, 760
PleI	GAGTC	1 cut(s)	177
PpsI	GAGTC	1 cut(s)	177
PscI	ACATGT	1 cut(s)	732
PshBI	ATTAAT	1 cut(s)	816
Psp6I	CCWGG	1 cut(s)	115
PspFI	CCCAGC	1 cut(s)	539
PspGI	CCWGG	1 cut(s)	115
PspN4I	GGNNCC	2 cut(s)	146, 877
PspPI	GGNCC	1 cut(s)	119
PstI	CTGCAG	1 cut(s)	237
PvuII	CAGCTG	1 cut(s)	761
RsaI	GTAC	1 cut(s)	737
RsaNI	GTAC	1 cut(s)	736
RseI	CAYNNNNRTG	2 cut(s)	45, 48
SaqAI	TTAA	3 cut(s)	431, 816, 866
SatI	GCNGC	6 cut(s)	21, 254, 635, 638, 641, 759
Sau3AI	GATC	7 cut(s)	28, 229, 301, 367, 809, 844, 907
Sau96I	GGNCC	1 cut(s)	119
SchI	GAGTC	1 cut(s)	177
ScrFI	CCNGG	1 cut(s)	117
SduI	GDGCHC	1 cut(s)	511
SfaNI	GCATC	1 cut(s)	103
SfcI	CTRYAG	2 cut(s)	233, 795
SfuI	TTCGAA	1 cut(s)	245
SinI	GGWCC	1 cut(s)	119
SmiMI	CAYNNNNRTG	2 cut(s)	45, 48
Sse9I	AATT	5 cut(s)	247, 336, 658, 790, 948
SseBI	AGGCCT	1 cut(s)	115
SsiI	CCGC	3 cut(s)	254, 806, 897
SspMI	CTAG	2 cut(s)	276, 1018
StuI	AGGCCT	1 cut(s)	115
StyD4I	CCNGG	1 cut(s)	115
TaaI	ACNGT	1 cut(s)	444
TaiI	ACGT	1 cut(s)	1006
TaqI	TCGA	2 cut(s)	245, 654
TasI	AATT	5 cut(s)	247, 336, 658, 790, 948
TatI	WGTACW	1 cut(s)	735
TauI	GCSGC	1 cut(s)	256
TfiI	GAWTC	3 cut(s)	692, 776, 901
Tru1I	TTAA	3 cut(s)	431, 816, 866
Tru9I	TTAA	3 cut(s)	431, 816, 866
TscAI	CASTG	1 cut(s)	449
TseFI	GTSAC	1 cut(s)	709
TseI	GCWGC	5 cut(s)	20, 634, 637, 640, 758
Tsp45I	GTSAC	1 cut(s)	709
TspDTI	ATGAA	5 cut(s)	300, 408, 468, 873, 1014
TspGWI	ACGGA	1 cut(s)	114
TspRI	CASTG	1 cut(s)	449
Van91I	CCANNNNNTGG	1 cut(s)	321
VpaK11BI	GGWCC	1 cut(s)	119
VspI	ATTAAT	1 cut(s)	816
XapI	RAATTY	3 cut(s)	336, 790, 948
XceI	RCATGY	1 cut(s)	736
XmiI	GTMKAC	1 cut(s)	1006
XmnI	GAANNNNTTC	1 cut(s)	596
XspI	CTAG	2 cut(s)	276, 1018

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.