Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0004958

Physical Location & Seq

Genomic Coordinates Forward (+)

3502092 .. 3503834

Gene Structure 1743 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

AT5G11050.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1272 bp

ATGGAAGAACAGAAAATTCAAGAGAAGAGCCTCGCTCACGGCGCTGCACCACCGTTGACGGCGGTTGAGAGATTCTTGAACGGCCAAAAGAACGAAGCCTTGTGCTTCAAGAAACAAGAACGTTCTATAGACCGACCGATCGTGAAGACGACAAGGGCGATTGAGATTAGAAATGAAAACAAAGAGAACATGATGTTTGGTCCGAGGAAGGAGAAAAACTTGGCCGTTATTGGAGAAATCGTCGTTAAAGGTGCAGCTAAAGATTATACTTGCAAGGATATAACAAAGAAGCAACCATACAAGAATATCATCAAAGGGCAATGGACAGCCGATGAAGACAGGAAGTTGATAAAGTTGGTGATGCAACATGGAGAGAGGAAATGGGCAGTAATCTCGGAGAAGCTTGAGGGAAGAGCAGGCAAGCAATGTCGTGAGAGATGGCATAATCATCTCCGTCCTGATATCAAGAAAGATAGTTGGAGTGAAGAAGAAGAGAGACTTCTTGTGGAAGCACACACCAGAATCGGGAATAAGTGGGCAGAGATCGCTAAACTCATACAAGGGCGAACCGAAAACTCGATCAAGAACCATTGGAATGCGACAAAACGACGCCAAAACTCAAAACGCAAACATAAGCGTTCAAAAAACGCGGATAGTAACAGCGATATTGATGATCTCTCTCCATCCGCTAAAAGGCCGCGCATTCTCGAAGACTATATTAAAAACATCGAGAATAATGACAAGAACAATGGCGAGAACATCATGACTACTAGTGGTAACAATGTTCTTTCGACTTCGAATTATGATCAGTTCAATTCTGAAGACTCTACATCGTCACTCTTGGATGATCCTTATGACGAAGAGCTTGTTTTCCTGAAAAATATCTTTGAGAACCATTCGCTCGAGAACATCAATTTGAGCCAAGGTACGGAGATAACCCAGTCTTCTTCATCTGGGTTTATGATCGAGAACCCTAAACCTAAACCTAACTTGTACAACAATACTTTTGGAACACATCTTGGAGCAATGGTCACAGAACCTGCCAATTCTTCCCACCTCGCATCTGATATCTACTTATCTGATTTGTTGAACGGTACGGCGTCGTCTTCTTCTTCACTTACTTTTCTGTCTTCCAACAACAATGAGCATGCCGGTGAAAACGAGTTGCTTTTGCCCCAAGCTAACTCCACTAGCGAAAGAAGAGAAATGGATCTGATAGAAATGTTGTCTGGTTCTACTCAAGGTAGCAACATTTGGTTCCCATTGTTCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000981 GO:0000988 GO:0000989 GO:0001067 GO:0001076 GO:0001134 GO:0001135 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0006357 GO:0008150 GO:0009889 GO:0009987 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0030154 GO:0031323 GO:0031326 GO:0032502 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0044212 GO:0044424 GO:0044464 GO:0048869 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0051302 GO:0060255 GO:0065007 GO:0080090 GO:0097159 GO:0140110 GO:1901363 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Myb_DNA-binding

Protein Analysis

423

Amino Acids

48.09

Weight (kDa)

6.86

Isoelectric Point (pI)

50.21

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Myb_DNA-binding	PF00249	105 - 151	4.6e-17	Myb-like DNA-binding domain
Myb_DNA-bind_6	PF13921	108 - 168	9.5e-19	Myb-like DNA-binding domain
Myb_DNA-binding	PF00249	157 - 199	1.2e-15	Myb-like DNA-binding domain
Myb_DNA-bind_6	PF13921	160 - 215	1.3e-08	Myb-like DNA-binding domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0004958)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G11050 AT5G58850
fragaria_vesca	FvH4_3g38310 FvH4_3g38320
malus_domestica	MD03G1073100.v1.1 MD11G1079000.v1.1
prunus_persica	Prupe.6G059700_v2.0.a1
pyrus_communis	pycom03g05910
rosa_chinensis	RchiOBHm_Chr5g0068891 RchiOBHm_Chr7g0211831
rosa_laevigata	RLG00000002962 RLG00000036017
rosa_multiflora	Rmu_sc0009005.1_g000013 Rmu_sc0013825.1_g000001 Rmu_sc0016160.1_g000005 Rmu_ssc0000378.1_g000003
rosa_roxburghii	Rroxscaffold_1G00011840 Rroxscaffold_3G00247400
rosa_rugosa	Rorug05G0394200 Rorug07G0129000
rosa_samantha	Rh5AG451300 Rh5BG470000 Rh5CG492500 Rh5DG483100 Rh7AG261700 Rh7BG255300 Rh7CG278300 Rh7DG268300
rosa_wichuraiana	Rw5G042150 Rw7G022320

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	1048
AccII	CGCG	2 cut(s)	650, 700
AciI	CCGC	4 cut(s)	62, 650, 687, 698
AclI	AACGTT	1 cut(s)	121
AclWI	GGATC	2 cut(s)	842, 1218
AcoI	YGGCCR	2 cut(s)	82, 222
AcsI	RAATTY	1 cut(s)	15
AcuI	CTGAAG	1 cut(s)	840
AcyI	GRCGYC	2 cut(s)	610, 1100
AfaI	GTAC	3 cut(s)	928, 995, 1096
AfiI	CCNNNNNNNGG	3 cut(s)	525, 693, 928
AgsI	TTSAA	6 cut(s)	20, 79, 109, 642, 814, 1090
AhlI	ACTAGT	1 cut(s)	770
AluBI	AGCT	4 cut(s)	257, 403, 865, 1181
AluI	AGCT	4 cut(s)	257, 403, 865, 1181
Alw26I	GTCTC	1 cut(s)	490
AlwI	GGATC	2 cut(s)	842, 1218
AlwNI	CAGNNNCTG	1 cut(s)	1040
Ama87I	CYCGRG	1 cut(s)	902
AoxI	GGCC	3 cut(s)	82, 222, 695
ApeKI	GCWGC	2 cut(s)	44, 254
ApoI	RAATTY	1 cut(s)	15
AspLEI	GCGC	2 cut(s)	44, 702
AspS9I	GGNCC	1 cut(s)	200
AsuHPI	GGTGA	2 cut(s)	370, 1166
AsuII	TTCGAA	1 cut(s)	797
AvaI	CYCGRG	1 cut(s)	902
AvaII	GGWCC	1 cut(s)	200
BarI	GAAGNNNNNNTAC	2 cut(s)	281, 313
BbsI	GAAGAC	7 cut(s)	152, 342, 717, 828, 936, 1098, 1122
BbvI	GCAGC	2 cut(s)	31, 266
BccI	CCATC	2 cut(s)	432, 691
BceAI	ACGGC	5 cut(s)	55, 75, 97, 209, 1113
BcgI	CGANNNNNNTGC	2 cut(s)	375, 409
BclI	TGATCA	1 cut(s)	805
BcoDI	GTCTC	1 cut(s)	490
BcuI	ACTAGT	1 cut(s)	770
BfaI	CTAG	3 cut(s)	771, 1191, 1270
BfmI	CTRYAG	1 cut(s)	126
BfoI	RGCGCY	1 cut(s)	45
BfuAI	ACCTGC	1 cut(s)	1048
BisI	GCNGC	3 cut(s)	45, 255, 698
BlsI	GCNGC	3 cut(s)	46, 256, 699
Bme18I	GGWCC	1 cut(s)	200
BmeT110I	CYCGRG	1 cut(s)	902
BmgT120I	GGNCC	1 cut(s)	200
BmiI	GGNNCC	1 cut(s)	1259
BmrI	ACTGGG	1 cut(s)	934
BmsI	GCATC	2 cut(s)	351, 1070
BmuI	ACTGGG	1 cut(s)	934
BpiI	GAAGAC	7 cut(s)	152, 342, 717, 828, 936, 1098, 1122
BplI	GAGNNNNNCTC	2 cut(s)	19, 51
Bpu14I	TTCGAA	1 cut(s)	797
BpuEI	CTTGAG	2 cut(s)	425, 1224
BsaHI	GRCGYC	2 cut(s)	610, 1100
BsaJI	CCNNGG	2 cut(s)	203, 922
BsaXI	ACNNNNNCTCC	4 cut(s)	225, 255, 1014, 1044
Bsc4I	CCNNNNNNNGG	3 cut(s)	525, 693, 928
Bse118I	RCCGGY	1 cut(s)	1151
Bse1I	ACTGG	1 cut(s)	940
Bse3DI	GCAATG	3 cut(s)	326, 431, 1032
BseDI	CCNNGG	2 cut(s)	203, 922
BseGI	GGATG	2 cut(s)	683, 850
BseLI	CCNNNNNNNGG	3 cut(s)	525, 693, 928
BseMI	GCAATG	3 cut(s)	326, 431, 1032
BseNI	ACTGG	1 cut(s)	940
BseXI	GCAGC	2 cut(s)	31, 266
BsgI	GTGCAG	2 cut(s)	30, 273
Bsh1236I	CGCG	2 cut(s)	650, 700
Bsh1285I	CGRYCG	2 cut(s)	137, 141
BshFI	GGCC	3 cut(s)	84, 224, 697
BsiEI	CGRYCG	2 cut(s)	137, 141
BsiHKCI	CYCGRG	1 cut(s)	902
BsiSI	CCGG	1 cut(s)	1152
BslI	CCNNNNNNNGG	3 cut(s)	525, 693, 928
BsmAI	GTCTC	1 cut(s)	490
BsmI	GAATGC	2 cut(s)	601, 702
BsnI	GGCC	3 cut(s)	84, 224, 697
BsoBI	CYCGRG	1 cut(s)	902
Bsp119I	TTCGAA	1 cut(s)	797
Bsp1407I	TGTACA	1 cut(s)	993
Bsp143I	GATC	8 cut(s)	138, 543, 579, 673, 805, 847, 963, 1210
BspACI	CCGC	4 cut(s)	62, 650, 687, 698
BspANI	GGCC	3 cut(s)	84, 224, 697
BspFNI	CGCG	2 cut(s)	650, 700
BspHI	TCATGA	1 cut(s)	762
BspLI	GGNNCC	1 cut(s)	1259
BspMI	ACCTGC	1 cut(s)	1048
BspPI	GGATC	2 cut(s)	842, 1218
BspQI	GCTCTTC	3 cut(s)	20, 406, 855
BspT104I	TTCGAA	1 cut(s)	797
BsrDI	GCAATG	3 cut(s)	326, 431, 1032
BsrFI	RCCGGY	1 cut(s)	1151
BsrGI	TGTACA	1 cut(s)	993
BsrI	ACTGG	1 cut(s)	940
BssAI	RCCGGY	1 cut(s)	1151
BssECI	CCNNGG	2 cut(s)	203, 922
BssMI	GATC	8 cut(s)	138, 543, 579, 673, 805, 847, 963, 1210
BssNI	GRCGYC	2 cut(s)	610, 1100
BssT1I	CCWWGG	1 cut(s)	922
Bst4CI	ACNGT	2 cut(s)	54, 1094
Bst6I	CTCTTC	5 cut(s)	20, 406, 486, 855, 1195
BstACI	GRCGYC	2 cut(s)	610, 1100
BstAUI	TGTACA	1 cut(s)	993
BstBI	TTCGAA	1 cut(s)	797
BstC8I	GCNNGC	3 cut(s)	418, 422, 1149
BstF5I	GGATG	2 cut(s)	683, 850
BstFNI	CGCG	2 cut(s)	650, 700
BstH2I	RGCGCY	1 cut(s)	45
BstHHI	GCGC	2 cut(s)	44, 702
BstKTI	GATC	8 cut(s)	141, 546, 582, 676, 808, 850, 966, 1213
BstMAI	GTCTC	1 cut(s)	490
BstMBI	GATC	8 cut(s)	138, 543, 579, 673, 805, 847, 963, 1210
BstMCI	CGRYCG	2 cut(s)	137, 141
BstMWI	GCNNNNNNNGC	2 cut(s)	41, 545
BstNSI	RCATGY	1 cut(s)	1151
BstSFI	CTRYAG	1 cut(s)	126
BstUI	CGCG	2 cut(s)	650, 700
BstV1I	GCAGC	2 cut(s)	31, 266
BstV2I	GAAGAC	7 cut(s)	152, 342, 717, 828, 936, 1098, 1122
BstX2I	RGATCY	1 cut(s)	1210
BstYI	RGATCY	1 cut(s)	1210
BsuRI	GGCC	3 cut(s)	84, 224, 697
BtsCI	GGATG	2 cut(s)	683, 850
BveI	ACCTGC	1 cut(s)	1048
Cac8I	GCNNGC	3 cut(s)	418, 422, 1149
CaiI	CAGNNNCTG	1 cut(s)	1040
CciI	TCATGA	1 cut(s)	762
CfoI	GCGC	2 cut(s)	44, 702
Cfr10I	RCCGGY	1 cut(s)	1151
Cfr13I	GGNCC	1 cut(s)	200
CseI	GACGC	2 cut(s)	618, 1089
Csp6I	GTAC	3 cut(s)	927, 994, 1095
CviAII	CATG	4 cut(s)	190, 368, 763, 1148
CviQI	GTAC	3 cut(s)	927, 994, 1095
DpnI	GATC	8 cut(s)	140, 545, 581, 675, 807, 849, 965, 1212
DpnII	GATC	8 cut(s)	138, 543, 579, 673, 805, 847, 963, 1210
EaeI	YGGCCR	2 cut(s)	82, 222
Eam1104I	CTCTTC	5 cut(s)	20, 406, 486, 855, 1195
EarI	CTCTTC	5 cut(s)	20, 406, 486, 855, 1195
Eco130I	CCWWGG	1 cut(s)	922
Eco32I	GATATC	2 cut(s)	463, 1069
Eco47I	GGWCC	1 cut(s)	200
Eco57I	CTGAAG	1 cut(s)	840
Eco88I	CYCGRG	1 cut(s)	902
EcoRV	GATATC	2 cut(s)	463, 1069
EcoT14I	CCWWGG	1 cut(s)	922
ErhI	CCWWGG	1 cut(s)	922
FaeI	CATG	4 cut(s)	193, 371, 766, 1151
FalI	AAGNNNNNCTT	2 cut(s)	483, 515
FatI	CATG	4 cut(s)	189, 367, 762, 1147
FbaI	TGATCA	1 cut(s)	805
Fnu4HI	GCNGC	3 cut(s)	45, 255, 698
FokI	GGATG	2 cut(s)	670, 857
Fsp4HI	GCNGC	3 cut(s)	45, 255, 698
FspBI	CTAG	3 cut(s)	771, 1191, 1270
GlaI	GCGC	2 cut(s)	43, 701
GluI	GCNGC	3 cut(s)	45, 255, 698
HaeII	RGCGCY	1 cut(s)	45
HaeIII	GGCC	3 cut(s)	84, 224, 697
HapII	CCGG	1 cut(s)	1152
HgaI	GACGC	2 cut(s)	618, 1089
HhaI	GCGC	2 cut(s)	44, 702
Hin1I	GRCGYC	2 cut(s)	610, 1100
Hin1II	CATG	4 cut(s)	193, 371, 766, 1151
Hin6I	GCGC	2 cut(s)	42, 700
HinP1I	GCGC	2 cut(s)	42, 700
HincII	GTYRAC	1 cut(s)	57
HindII	GTYRAC	1 cut(s)	57
HindIII	AAGCTT	1 cut(s)	401
HinfI	GANTC	3 cut(s)	72, 522, 824
HpaII	CCGG	1 cut(s)	1152
HphI	GGTGA	2 cut(s)	370, 1166
Hpy166II	GTNNAC	1 cut(s)	57
Hpy188I	TCNGA	6 cut(s)	204, 397, 820, 1066, 1081, 1215
Hpy8I	GTNNAC	1 cut(s)	57
Hpy99I	CGWCG	3 cut(s)	245, 612, 1105
HpyAV	CCTTC	1 cut(s)	202
HpyCH4III	ACNGT	2 cut(s)	54, 1094
HpyCH4IV	ACGT	1 cut(s)	121
HpyCH4V	TGCA	4 cut(s)	47, 254, 273, 364
HpyF10VI	GCNNNNNNNGC	2 cut(s)	41, 545
HpySE526I	ACGT	1 cut(s)	121
Hsp92I	GRCGYC	2 cut(s)	610, 1100
Hsp92II	CATG	4 cut(s)	193, 371, 766, 1151
HspAI	GCGC	2 cut(s)	42, 700
Ksp22I	TGATCA	1 cut(s)	805
Kzo9I	GATC	8 cut(s)	138, 543, 579, 673, 805, 847, 963, 1210
LguI	GCTCTTC	3 cut(s)	20, 406, 855
LmnI	GCTCC	1 cut(s)	1022
Lsp1109I	GCAGC	2 cut(s)	31, 266
LweI	GCATC	2 cut(s)	351, 1070
MaeI	CTAG	3 cut(s)	771, 1191, 1270
MaeII	ACGT	1 cut(s)	121
MaeIII	GTNAC	4 cut(s)	656, 776, 834, 1030
MalI	GATC	8 cut(s)	140, 545, 581, 675, 807, 849, 965, 1212
MboI	GATC	8 cut(s)	138, 543, 579, 673, 805, 847, 963, 1210
MflI	RGATCY	1 cut(s)	1210
MluCI	AATT	5 cut(s)	15, 799, 814, 913, 1045
MlyI	GAGTC	1 cut(s)	818
MmeI	TCCRAC	2 cut(s)	458, 1158
MnlI	CCTC	5 cut(s)	41, 198, 369, 400, 1067
MseI	TTAA	2 cut(s)	246, 720
MslI	CAYNNNNRTG	2 cut(s)	594, 1152
MspI	CCGG	1 cut(s)	1152
Mva1269I	GAATGC	2 cut(s)	601, 702
MvnI	CGCG	2 cut(s)	650, 700
MwoI	GCNNNNNNNGC	2 cut(s)	41, 545
NdeII	GATC	8 cut(s)	138, 543, 579, 673, 805, 847, 963, 1210
NlaIII	CATG	4 cut(s)	193, 371, 766, 1151
NlaIV	GGNNCC	1 cut(s)	1259
NmuCI	GTSAC	2 cut(s)	834, 1030
NspI	RCATGY	1 cut(s)	1151
NspV	TTCGAA	1 cut(s)	797
PaeI	GCATGC	1 cut(s)	1151
PaeR7I	CTCGAG	1 cut(s)	902
PagI	TCATGA	1 cut(s)	762
PciSI	GCTCTTC	3 cut(s)	20, 406, 855
PcsI	WCGNNNNNNNCGW	1 cut(s)	155
PctI	GAATGC	2 cut(s)	601, 702
PfeI	GAWTC	2 cut(s)	72, 522
PkrI	GCNGC	3 cut(s)	46, 256, 699
Ple19I	CGATCG	1 cut(s)	141
PleI	GAGTC	1 cut(s)	818
PpsI	GAGTC	1 cut(s)	818
Psp1406I	AACGTT	1 cut(s)	121
PspN4I	GGNNCC	1 cut(s)	1259
PspPI	GGNCC	1 cut(s)	200
PstNI	CAGNNNCTG	1 cut(s)	1040
PsuI	RGATCY	1 cut(s)	1210
PvuI	CGATCG	1 cut(s)	141
RsaI	GTAC	3 cut(s)	928, 995, 1096
RsaNI	GTAC	3 cut(s)	927, 994, 1095
RseI	CAYNNNNRTG	2 cut(s)	594, 1152
SapI	GCTCTTC	3 cut(s)	20, 406, 855
SaqAI	TTAA	2 cut(s)	246, 720
SatI	GCNGC	3 cut(s)	45, 255, 698
Sau3AI	GATC	8 cut(s)	138, 543, 579, 673, 805, 847, 963, 1210
Sau96I	GGNCC	1 cut(s)	200
SchI	GAGTC	1 cut(s)	818
SfaNI	GCATC	2 cut(s)	351, 1070
SfcI	CTRYAG	1 cut(s)	126
Sfr274I	CTCGAG	1 cut(s)	902
SfuI	TTCGAA	1 cut(s)	797
SinI	GGWCC	1 cut(s)	200
SlaI	CTCGAG	1 cut(s)	902
SmiMI	CAYNNNNRTG	2 cut(s)	594, 1152
SmlI	CTYRAG	3 cut(s)	404, 902, 1239
SmoI	CTYRAG	3 cut(s)	404, 902, 1239
SpeI	ACTAGT	1 cut(s)	770
SphI	GCATGC	1 cut(s)	1151
Sse9I	AATT	5 cut(s)	15, 799, 814, 913, 1045
SsiI	CCGC	4 cut(s)	62, 650, 687, 698
SspMI	CTAG	3 cut(s)	771, 1191, 1270
StyI	CCWWGG	1 cut(s)	922
TaaI	ACNGT	2 cut(s)	54, 1094
TaiI	ACGT	1 cut(s)	124
TaqI	TCGA	7 cut(s)	578, 708, 729, 791, 797, 903, 966
TaqII	GACCGA	2 cut(s)	147, 151
TasI	AATT	5 cut(s)	15, 799, 814, 913, 1045
TatI	WGTACW	1 cut(s)	993
TauI	GCSGC	1 cut(s)	700
TfiI	GAWTC	2 cut(s)	72, 522
Tru1I	TTAA	2 cut(s)	246, 720
Tru9I	TTAA	2 cut(s)	246, 720
TseFI	GTSAC	2 cut(s)	834, 1030
TseI	GCWGC	2 cut(s)	44, 254
Tsp45I	GTSAC	2 cut(s)	834, 1030
TspDTI	ATGAA	3 cut(s)	189, 348, 939
TspGWI	ACGGA	2 cut(s)	443, 944
VpaK11BI	GGWCC	1 cut(s)	200
XapI	RAATTY	1 cut(s)	15
XceI	RCATGY	1 cut(s)	1151
XhoI	CTCGAG	1 cut(s)	902
XspI	CTAG	3 cut(s)	771, 1191, 1270

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.