Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr3

Orthogroup ID

OG0004958

Physical Location & Seq

Genomic Coordinates Reverse (-)

4680638 .. 4683019

Gene Structure 2382 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom03g05910.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1503 bp

ATGGAGGGAGGTAGAGGAGGAGGAGGGGGTGGTGGTGATCTTGGAGTTTATGGGTTTAGAAACAACACACAACATCATAGCATATATAAAACAGGTCCTCCATTGACAGCCATAGATAGATTCTTGTGGGGAAGTCATCAAAGTCAAAACAATGCAAGCAACAAAGATCATCAGAAGGTGGTTTCCTCAAATGGGTTGAGTGGTTTTGCTTCTTTTGGCGGTGGTGGTGCAATAGTTGGTCATGAGGCAGCAGCTTCTTGGCCTAGCAATTATAGTGCTACTACAAATCATCTCCAAGAGCCAAGCTTTGTGGATGAATTTTTTGTTGGACAAGGAGAAGCCTTGATGATGAGTTGGTTTCAAGGGCAAAACCCTAATACCACAGATGGTTTCAGAGAAGAAGGAAGGGTTTCCGAAAGGAATTGCAAAGCGGTCGGAAAGAGAGCTAAAAAGGGTTTAACTGCTGCTACTATAATAAAGGGACAGTGGACTGATGGAGAAGACAGGAAGCTGATGAGGCTGGTGAAGCAATATGGAGTGAGAAAATGGGCACAGATAGCAGAGACGTTGGAGGGTAGGGTTGGCAAGCAGTGCAGAGAAAGATGGCACAATCATTTGCGCCCCGATATCAAGAAAGATAGCTGGACTGAAGAGGAGGAGGCAATACTTGTTGACGCTCATACTGGAGTTGGAAACCGTTGGGCAGAGATTGCAAAACGCATTCCAGGAAGAACCGAAAACGCCATAAAAAACCATTGGAATGCAACAAAAAGGAGGCAGAATTCAAGGAGAAAAAACAAGCAAACTGAAGGCAAAAATGGAAACAACAAGAAGCCTCAGTCATCCATACTCCAAAACTACATCACGAGCAAGAACCTCATAATCAATAACAACTCCAATATTTCCTCTAGTACCCCTACAAGCTCTTCCACCCTCTCTCATGAAGATCCATCAAAAACCTACCTCAACATTTTGGTCACAGAGCCATCTGATCAGTCCACTACTAGCAACTGTTGTGATTCTCCATTGAATTTGGCTGACTCTTTATACAATGATGACGAACTTGTTTTCATGCAAAATTTCTTCACCAACAATCCTCACAATCATCCGCAACAGCCTTCCAATTCCACTGAGAACAATGTTGGACTAATTGTTAGTCCAATGGAAGCCTCACAAAATCCAAACATTTACAATTTTAGTAGTTCTATAATTAATCCCACTACTACTACTACTACAACCAGTACCCCCAGTCCTGCTACTCCTACCCCTCTGTATTCTGACATGTACCTCTCATACCTCTTAAATGGAGCAGCCAATTCATCATCTTATAATCCCAATGATCATCATCCTCACTTAGGGTTTTACAACACAAACATGGAATATTTGGTGTCACATGATCATCATCATCATCTTCAAGCTGCTGCTTCTGCTTCGAACGAAAGGCGAGAGATGGATTTGATAGAGATGGGGTCTGCTTCTCAAGGTACCCGATCCTTAACCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000981 GO:0000988 GO:0000989 GO:0001067 GO:0001076 GO:0001134 GO:0001135 GO:0003006 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0006357 GO:0006935 GO:0007275 GO:0008150 GO:0009553 GO:0009605 GO:0009856 GO:0009889 GO:0010183 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0022414 GO:0031323 GO:0031326 GO:0032501 GO:0032502 GO:0040011 GO:0042221 GO:0042330 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0044212 GO:0044424 GO:0044464 GO:0044706 GO:0045595 GO:0045691 GO:0045697 GO:0048229 GO:0048856 GO:0048868 GO:0050789 GO:0050793 GO:0050794 GO:0050896 GO:0050918 GO:0051171 GO:0051239 GO:0051252 GO:0051704 GO:0060255 GO:0065007 GO:0080090 GO:0097159 GO:0140110 GO:1901363 GO:1903506 GO:2000026 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Myb_DNA-binding

Protein Analysis

501

Amino Acids

55.19

Weight (kDa)

7.36

Isoelectric Point (pI)

47.28

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0004958)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G11050 AT5G58850
fragaria_vesca	FvH4_3g38310 FvH4_3g38320
malus_domestica	MD03G1073100.v1.1 MD11G1079000.v1.1
prunus_persica	Prupe.6G059700_v2.0.a1
pyrus_communis	pycom03g05910
rosa_chinensis	RchiOBHm_Chr5g0068891 RchiOBHm_Chr7g0211831
rosa_laevigata	RLG00000002962 RLG00000036017
rosa_multiflora	Rmu_sc0009005.1_g000013 Rmu_sc0013825.1_g000001 Rmu_sc0016160.1_g000005 Rmu_ssc0000378.1_g000003
rosa_roxburghii	Rroxscaffold_1G00011840 Rroxscaffold_3G00247400
rosa_rugosa	Rorug05G0394200 Rorug07G0129000
rosa_samantha	Rh5AG451300 Rh5BG470000 Rh5CG492500 Rh5DG483100 Rh7AG261700 Rh7BG255300 Rh7CG278300 Rh7DG268300
rosa_wichuraiana	Rw5G042150 Rw7G022320

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	1329
Acc65I	GGTACC	1 cut(s)	1484
AccB1I	GGYRCC	1 cut(s)	1484
AciI	CCGC	3 cut(s)	219, 431, 1109
AclWI	GGATC	2 cut(s)	941, 1485
AcsI	RAATTY	4 cut(s)	317, 781, 1030, 1078
AcuI	CTGAAG	2 cut(s)	669, 828
AfaI	GTAC	4 cut(s)	913, 1243, 1286, 1486
AfiI	CCNNNNNNNGG	2 cut(s)	192, 1355
AflIII	ACRYGT	1 cut(s)	1281
AgsI	TTSAA	4 cut(s)	362, 786, 1030, 1415
AjnI	CCWGG	1 cut(s)	724
AjuI	GAANNNNNNNTTGG	2 cut(s)	309, 341
AluBI	AGCT	7 cut(s)	254, 306, 446, 511, 642, 924, 1418
AluI	AGCT	7 cut(s)	254, 306, 446, 511, 642, 924, 1418
Alw26I	GTCTC	1 cut(s)	557
AlwI	GGATC	2 cut(s)	941, 1485
AoxI	GGCC	1 cut(s)	260
ApeKI	GCWGC	6 cut(s)	248, 251, 464, 1310, 1418, 1421
ApoI	RAATTY	4 cut(s)	317, 781, 1030, 1078
AseI	ATTAAT	1 cut(s)	1212
Asp700I	GAANNNNTTC	1 cut(s)	409
Asp718I	GGTACC	1 cut(s)	1484
AspLEI	GCGC	1 cut(s)	621
AspS9I	GGNCC	1 cut(s)	95
AsuHPI	GGTGA	3 cut(s)	47, 535, 1078
AsuII	TTCGAA	1 cut(s)	1433
AvaII	GGWCC	1 cut(s)	95
BaeGI	GKGCMC	1 cut(s)	553
BanI	GGYRCC	1 cut(s)	1484
BauI	CACGAG	1 cut(s)	865
BbsI	GAAGAC	1 cut(s)	507
BbvI	GCAGC	6 cut(s)	260, 263, 451, 1322, 1405, 1408
BccI	CCATC	7 cut(s)	380, 488, 597, 958, 994, 1444, 1459
BcgI	CGANNNNNNTGC	2 cut(s)	415, 449
BciT130I	CCWGG	1 cut(s)	726
BclI	TGATCA	3 cut(s)	991, 1339, 1396
BcoDI	GTCTC	1 cut(s)	557
BfaI	CTAG	4 cut(s)	264, 909, 1005, 1501
BisI	GCNGC	6 cut(s)	249, 252, 465, 1311, 1419, 1422
BlsI	GCNGC	6 cut(s)	250, 253, 466, 1312, 1420, 1423
Bme1390I	CCNGG	1 cut(s)	726
Bme18I	GGWCC	1 cut(s)	95
BmgT120I	GGNCC	1 cut(s)	95
BmiI	GGNNCC	1 cut(s)	1486
BmrFI	CCNGG	1 cut(s)	726
BmrI	ACTGGG	1 cut(s)	1242
BmuI	ACTGGG	1 cut(s)	1242
BpiI	GAAGAC	1 cut(s)	507
BpmI	CTGGAG	1 cut(s)	705
Bpu14I	TTCGAA	1 cut(s)	1433
BpuEI	CTTGAG	1 cut(s)	1464
BsaBI	GATNNNNATC	2 cut(s)	1344, 1401
BsaXI	ACNNNNNCTCC	2 cut(s)	82, 112
Bsc4I	CCNNNNNNNGG	2 cut(s)	192, 1355
Bse1I	ACTGG	3 cut(s)	688, 1239, 1248
Bse8I	GATNNNNATC	2 cut(s)	1344, 1401
BseBI	CCWGG	1 cut(s)	726
BseGI	GGATG	4 cut(s)	319, 842, 1105, 1345
BseJI	GATNNNNATC	2 cut(s)	1344, 1401
BseLI	CCNNNNNNNGG	2 cut(s)	192, 1355
BseMII	CTCAG	2 cut(s)	851, 1122
BseNI	ACTGG	3 cut(s)	688, 1239, 1248
BseRI	GAGGAG	5 cut(s)	30, 33, 36, 668, 671
BseSI	GKGCMC	1 cut(s)	553
BseXI	GCAGC	6 cut(s)	260, 263, 451, 1322, 1405, 1408
BsgI	GTGCAG	1 cut(s)	613
Bsh1285I	CGRYCG	1 cut(s)	435
BshFI	GGCC	1 cut(s)	262
BshNI	GGYRCC	1 cut(s)	1484
BsiEI	CGRYCG	1 cut(s)	435
BslFI	GGGAC	1 cut(s)	495
BslI	CCNNNNNNNGG	2 cut(s)	192, 1355
BsmAI	GTCTC	1 cut(s)	557
BsmBI	CGTCTC	1 cut(s)	557
BsmFI	GGGAC	1 cut(s)	495
BsmI	GAATGC	2 cut(s)	720, 766
BsnI	GGCC	1 cut(s)	262
Bsp119I	TTCGAA	1 cut(s)	1433
Bsp1286I	GDGCHC	1 cut(s)	553
Bsp143I	GATC	7 cut(s)	37, 166, 946, 991, 1339, 1396, 1490
BspACI	CCGC	3 cut(s)	219, 431, 1109
BspANI	GGCC	1 cut(s)	262
BspCNI	CTCAG	2 cut(s)	850, 1123
BspHI	TCATGA	2 cut(s)	241, 940
BspLI	GGNNCC	1 cut(s)	1486
BspPI	GGATC	2 cut(s)	941, 1485
BspQI	GCTCTTC	1 cut(s)	931
BspT104I	TTCGAA	1 cut(s)	1433
BspT107I	GGYRCC	1 cut(s)	1484
BsrI	ACTGG	3 cut(s)	688, 1239, 1248
BssMI	GATC	7 cut(s)	37, 166, 946, 991, 1339, 1396, 1490
BssSI	CACGAG	1 cut(s)	865
Bst2BI	CACGAG	1 cut(s)	865
Bst2UI	CCWGG	1 cut(s)	726
Bst4CI	ACNGT	3 cut(s)	486, 698, 1013
Bst6I	CTCTTC	2 cut(s)	645, 931
BstAPI	GCANNNNNTGC	2 cut(s)	591, 710
BstBI	TTCGAA	1 cut(s)	1433
BstC8I	GCNNGC	2 cut(s)	157, 587
BstDEI	CTNAG	3 cut(s)	837, 1131, 1354
BstENI	CCTNNNNNAGG	1 cut(s)	1353
BstF5I	GGATG	4 cut(s)	319, 842, 1105, 1345
BstHHI	GCGC	1 cut(s)	621
BstKTI	GATC	7 cut(s)	40, 169, 949, 994, 1342, 1399, 1493
BstMAI	GTCTC	1 cut(s)	557
BstMBI	GATC	7 cut(s)	37, 166, 946, 991, 1339, 1396, 1490
BstMCI	CGRYCG	1 cut(s)	435
BstMWI	GCNNNNNNNGC	6 cut(s)	517, 526, 557, 591, 710, 1427
BstNI	CCWGG	1 cut(s)	726
BstNSI	RCATGY	1 cut(s)	1285
BstSCI	CCNGG	1 cut(s)	724
BstSLI	GKGCMC	1 cut(s)	553
BstV1I	GCAGC	6 cut(s)	260, 263, 451, 1322, 1405, 1408
BstV2I	GAAGAC	1 cut(s)	507
BstX2I	RGATCY	1 cut(s)	946
BstYI	RGATCY	1 cut(s)	946
BsuRI	GGCC	1 cut(s)	262
BtsCI	GGATG	4 cut(s)	319, 842, 1105, 1345
BtsI	GCAGTG	1 cut(s)	596
BtsIMutI	CAGTG	3 cut(s)	491, 596, 1128
Cac8I	GCNNGC	2 cut(s)	157, 587
CciI	TCATGA	2 cut(s)	241, 940
CfoI	GCGC	1 cut(s)	621
Cfr13I	GGNCC	1 cut(s)	95
CseI	GACGC	1 cut(s)	683
Csp6I	GTAC	4 cut(s)	912, 1242, 1285, 1485
CspCI	CAANNNNNGTGG	2 cut(s)	291, 326
CviAII	CATG	6 cut(s)	242, 941, 1072, 1282, 1375, 1394
CviQI	GTAC	4 cut(s)	912, 1242, 1285, 1485
DdeI	CTNAG	3 cut(s)	837, 1131, 1354
DpnI	GATC	7 cut(s)	39, 168, 948, 993, 1341, 1398, 1492
DpnII	GATC	7 cut(s)	37, 166, 946, 991, 1339, 1396, 1490
Eam1104I	CTCTTC	2 cut(s)	645, 931
EarI	CTCTTC	2 cut(s)	645, 931
Eco32I	GATATC	1 cut(s)	628
Eco47I	GGWCC	1 cut(s)	95
Eco57I	CTGAAG	2 cut(s)	669, 828
EcoNI	CCTNNNNNAGG	1 cut(s)	1353
EcoO109I	RGGNCCY	1 cut(s)	95
EcoRI	GAATTC	1 cut(s)	781
EcoRII	CCWGG	1 cut(s)	724
EcoRV	GATATC	1 cut(s)	628
Esp3I	CGTCTC	1 cut(s)	557
FaeI	CATG	6 cut(s)	245, 944, 1075, 1285, 1378, 1397
FaqI	GGGAC	1 cut(s)	495
FatI	CATG	6 cut(s)	241, 940, 1071, 1281, 1374, 1393
FbaI	TGATCA	3 cut(s)	991, 1339, 1396
Fnu4HI	GCNGC	6 cut(s)	249, 252, 465, 1311, 1419, 1422
FokI	GGATG	4 cut(s)	326, 829, 1092, 1332
Fsp4HI	GCNGC	6 cut(s)	249, 252, 465, 1311, 1419, 1422
FspBI	CTAG	4 cut(s)	264, 909, 1005, 1501
GlaI	GCGC	1 cut(s)	620
GluI	GCNGC	6 cut(s)	249, 252, 465, 1311, 1419, 1422
GsuI	CTGGAG	1 cut(s)	705
HaeIII	GGCC	1 cut(s)	262
HgaI	GACGC	1 cut(s)	683
HhaI	GCGC	1 cut(s)	621
Hin1II	CATG	6 cut(s)	245, 944, 1075, 1285, 1378, 1397
Hin6I	GCGC	1 cut(s)	619
HinP1I	GCGC	1 cut(s)	619
HincII	GTYRAC	1 cut(s)	673
HindII	GTYRAC	1 cut(s)	673
HindIII	AAGCTT	1 cut(s)	304
HinfI	GANTC	3 cut(s)	120, 1019, 1040
HphI	GGTGA	3 cut(s)	47, 535, 1078
Hpy166II	GTNNAC	3 cut(s)	489, 673, 999
Hpy188I	TCNGA	6 cut(s)	174, 395, 415, 437, 991, 1279
Hpy188III	TCNNGA	4 cut(s)	242, 631, 865, 941
Hpy8I	GTNNAC	3 cut(s)	489, 673, 999
HpyAV	CCTTC	5 cut(s)	169, 395, 399, 803, 1128
HpyCH4III	ACNGT	3 cut(s)	486, 698, 1013
HpyCH4IV	ACGT	1 cut(s)	566
HpyCH4V	TGCA	7 cut(s)	155, 230, 426, 594, 713, 764, 1075
HpyF10VI	GCNNNNNNNGC	6 cut(s)	517, 526, 557, 591, 710, 1427
HpyF3I	CTNAG	3 cut(s)	837, 1131, 1354
HpySE526I	ACGT	1 cut(s)	566
Hsp92II	CATG	6 cut(s)	245, 944, 1075, 1285, 1378, 1397
HspAI	GCGC	1 cut(s)	619
KpnI	GGTACC	1 cut(s)	1488
Ksp22I	TGATCA	3 cut(s)	991, 1339, 1396
Kzo9I	GATC	7 cut(s)	37, 166, 946, 991, 1339, 1396, 1490
LguI	GCTCTTC	1 cut(s)	931
LmnI	GCTCC	1 cut(s)	1307
Lsp1109I	GCAGC	6 cut(s)	260, 263, 451, 1322, 1405, 1408
MaeI	CTAG	4 cut(s)	264, 909, 1005, 1501
MaeII	ACGT	1 cut(s)	566
MaeIII	GTNAC	2 cut(s)	976, 1389
MalI	GATC	7 cut(s)	39, 168, 948, 993, 1341, 1398, 1492
MboI	GATC	7 cut(s)	37, 166, 946, 991, 1339, 1396, 1490
MboII	GAAGA	8 cut(s)	410, 512, 662, 741, 918, 956, 1075, 1403
MflI	RGATCY	1 cut(s)	946
MhlI	GDGCHC	1 cut(s)	553
MlyI	GAGTC	1 cut(s)	1034
MmeI	TCCRAC	5 cut(s)	307, 415, 549, 670, 1123
MroXI	GAANNNNTTC	1 cut(s)	409
MseI	TTAA	4 cut(s)	458, 1212, 1301, 1496
MslI	CAYNNNNRTG	2 cut(s)	759, 1373
MspR9I	CCNGG	1 cut(s)	726
Mva1269I	GAATGC	2 cut(s)	720, 766
MvaI	CCWGG	1 cut(s)	726
MwoI	GCNNNNNNNGC	6 cut(s)	517, 526, 557, 591, 710, 1427
NdeII	GATC	7 cut(s)	37, 166, 946, 991, 1339, 1396, 1490
NlaIII	CATG	6 cut(s)	245, 944, 1075, 1285, 1378, 1397
NlaIV	GGNNCC	1 cut(s)	1486
NmuCI	GTSAC	2 cut(s)	976, 1389
NspI	RCATGY	1 cut(s)	1285
NspV	TTCGAA	1 cut(s)	1433
PagI	TCATGA	2 cut(s)	241, 940
PciI	ACATGT	1 cut(s)	1281
PciSI	GCTCTTC	1 cut(s)	931
PctI	GAATGC	2 cut(s)	720, 766
PdmI	GAANNNNTTC	1 cut(s)	409
PfeI	GAWTC	2 cut(s)	120, 1019
PfoI	TCCNGGA	1 cut(s)	724
PkrI	GCNGC	6 cut(s)	250, 253, 466, 1312, 1420, 1423
PleI	GAGTC	1 cut(s)	1034
PpsI	GAGTC	1 cut(s)	1034
PpuMI	RGGWCCY	1 cut(s)	95
PscI	ACATGT	1 cut(s)	1281
PshBI	ATTAAT	1 cut(s)	1212
PsiI	TTATAA	1 cut(s)	1329
Psp5II	RGGWCCY	1 cut(s)	95
Psp6I	CCWGG	1 cut(s)	724
PspGI	CCWGG	1 cut(s)	724
PspN4I	GGNNCC	1 cut(s)	1486
PspPI	GGNCC	1 cut(s)	95
PspPPI	RGGWCCY	1 cut(s)	95
PsuI	RGATCY	1 cut(s)	946
RsaI	GTAC	4 cut(s)	913, 1243, 1286, 1486
RsaNI	GTAC	4 cut(s)	912, 1242, 1285, 1485
RseI	CAYNNNNRTG	2 cut(s)	759, 1373
SapI	GCTCTTC	1 cut(s)	931
SaqAI	TTAA	4 cut(s)	458, 1212, 1301, 1496
SatI	GCNGC	6 cut(s)	249, 252, 465, 1311, 1419, 1422
Sau3AI	GATC	7 cut(s)	37, 166, 946, 991, 1339, 1396, 1490
Sau96I	GGNCC	1 cut(s)	95
SchI	GAGTC	1 cut(s)	1034
ScrFI	CCNGG	1 cut(s)	726
SduI	GDGCHC	1 cut(s)	553
SfuI	TTCGAA	1 cut(s)	1433
SinI	GGWCC	1 cut(s)	95
SmiMI	CAYNNNNRTG	2 cut(s)	759, 1373
SmlI	CTYRAG	1 cut(s)	1479
SmoI	CTYRAG	1 cut(s)	1479
SsiI	CCGC	3 cut(s)	219, 431, 1109
SspI	AATATT	2 cut(s)	901, 1382
SspMI	CTAG	4 cut(s)	264, 909, 1005, 1501
StyD4I	CCNGG	1 cut(s)	724
TaaI	ACNGT	3 cut(s)	486, 698, 1013
TaiI	ACGT	1 cut(s)	569
TaqI	TCGA	1 cut(s)	1433
TfiI	GAWTC	2 cut(s)	120, 1019
Tru1I	TTAA	4 cut(s)	458, 1212, 1301, 1496
Tru9I	TTAA	4 cut(s)	458, 1212, 1301, 1496
TscAI	CASTG	3 cut(s)	491, 596, 1135
TseFI	GTSAC	2 cut(s)	976, 1389
TseI	GCWGC	6 cut(s)	248, 251, 464, 1310, 1418, 1421
Tsp45I	GTSAC	2 cut(s)	976, 1389
TspDTI	ATGAA	4 cut(s)	330, 957, 1060, 1308
TspRI	CASTG	3 cut(s)	491, 596, 1135
VpaK11BI	GGWCC	1 cut(s)	95
VspI	ATTAAT	1 cut(s)	1212
XagI	CCTNNNNNAGG	1 cut(s)	1353
XapI	RAATTY	4 cut(s)	317, 781, 1030, 1078
XceI	RCATGY	1 cut(s)	1285
XmnI	GAANNNNTTC	1 cut(s)	409
XspI	CTAG	4 cut(s)	264, 909, 1005, 1501

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.