RchiOBHm_Chr5g0068891
MYB Family

SANT SWI3, ADA2, N-CoR and TFIIIB'' DNA-binding domains

Basic Information

Type: gene
Biological Identity
rosa_chinensis
5
Physical Location & Seq
Forward (+)
74815829 .. 74818019
2191 bp
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UTR
Exon/CDS
Intron
PRQ34429

Sequence Viewer

Length: 1548 bp
ATGGAAGGAGAAGATGGTGCTGCTTCTGATCATCTTCACCATCATCATGGTGTTTATGGGTTTCAAAACAATCACATACAAACTCCTCATCAGCATCACAACCAACTCTTCAGGCCTGGTCCTCCGTTGAAAGCCATAGACAGGTTCCTGTGGTCTCAAAACAATGCAAAGAACAAAGAGAGACTCGTCTCCTCAAATGGGTTTTCCTCATTTGGTGGTGCAATGGGTGATCTGCAGGCTTGTTCGAATTGGCCGCCGAGTAGTCTCAGAGAGGCTAGCTTGGATGAACTGCTTTTTCTTGATCATGGTGAGGCCATGACTTGGCCTCCAGAGAAAATTCAAAACCCTAACATGGGGTTCAAAGAAGATCAAGTGAAGGTGGGTTCTAAAGGGGTGGGAAAGAAAGCTAAAAAGGGTTCATCTGTGCCTTTAATCAAAGGACAGTGGACAGATGAAGAAGACAGAAAACTGATGAGATTGGTGAAGCAATATGGAGTGAGGAAATGGGCACAGATAGCTGAGAAGCTTGTGGGTAGAGCTGGGAAGCAATGTAGAGAAAGGTGGCATAATCATTTGCGCCCTGATATCAAGAAAGATAGCTGGACTGAAGAGGAAGAGAAGATATTAGTAGAAGCTCATGCTGAGGTTGGGAACCGTTGGGCAGAGATTGCCAAACGCATTCCGGGAAGAACCGAAAATGCCATAAAGAATCATTGGAATGCTACAAAAAGGAGGCAGAATTCAAGGAGAAAGAACAAACAGACAGATGCCAAAAATGGATCATCATCATCAAATAAGCCTCCTCAACCTTCCATACTTCAAAACTACATAAGAAGCAAGAATTTCAATAACAAAGCCAACAACAACTCTTCTTCCAATGTTACCCCTACCCCAAGCAATATCAGCACCACTACCCCTACCAGCTCCTCCACTCTCACCCAGGACGAACCTTCAAAAATCCCCTTCAACATTTTTCTCTCGGACCCATCGGACTTATCTAGTTGTGAACACTCTCCATTGAACATTACAGCTGATTCCTACAGTGATGAGGAACTTCTCTTCATGCAGAACTTCTTCAACAACAACAATAATGTTCACAATCATAATCAGCAGCAGCAGCCATTACCCATCGACAATTACAATAATGGCCTTACTGCAAATCCAATGGATTCTACTGATTGGTTTGTCACTTCAACTCCAAAACCAAACATGTACACCAACAGAAACTTCCAAGCAGCTGTTCACAATGTAGAATCTCACATAGGGAATTCTACAGAAGACCCGCGATCCATTAATCCCCCTACTACCCATCCCAGTTCTGATCTCTACCTCTCTTACCTCTTAAATGGAGGAGCCAGTTCATCATCATCTTCCGCGAATCATGATCATCATATGGGTAATTACTATAACATGAACATTGATTTGGTGATTCATCAACATCAAGCAGCTTCTGCAACTGAAAGGAGAGAGATGGATCTGATTGAGATGGTTTCTTCTTCGTCTTCTTCTCAGTTTGCTCAAGGTACCAACACTACTAGCTTCTATTGA

Protein Analysis

515

Amino Acids

57.9

Weight (kDa)

7.42

Isoelectric Point (pI)

51.92

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Myb_DNA-binding PF00249 146 - 192 6.6e-17 Myb-like DNA-binding domain
Myb_DNA-bind_6 PF13921 149 - 206 5.2e-20 Myb-like DNA-binding domain
Myb_DNA-binding PF00249 198 - 240 3.4e-17 Myb-like DNA-binding domain
Myb_DNA-bind_6 PF13921 201 - 244 6.7e-09 Myb-like DNA-binding domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 1523
AccB1I GGYRCC 1 cut(s) 1523
AccB7I CCANNNNNTGG 1 cut(s) 321
AccII CGCG 2 cut(s) 1285, 1376
AciI CCGC 3 cut(s) 254, 1283, 1374
AclWI GGATC 3 cut(s) 787, 1281, 1482
AcoI YGGCCR 1 cut(s) 251
AcsI RAATTY 4 cut(s) 336, 739, 841, 1267
AcuI CTGAAG 2 cut(s) 94, 627
AfaI GTAC 2 cut(s) 1214, 1525
AfiI CCNNNNNNNGG 5 cut(s) 141, 198, 321, 352, 353
AflIII ACRYGT 1 cut(s) 1209
AjnI CCWGG 2 cut(s) 115, 939
AjuI GAANNNNNNNTTGG 6 cut(s) 1211, 1224, 1243, 1256, 1406, 1438
Alw26I GTCTC 4 cut(s) 159, 175, 193, 269
AlwI GGATC 3 cut(s) 787, 1281, 1482
AlwNI CAGNNNCTG 1 cut(s) 1451
AoxI GGCC 5 cut(s) 113, 251, 312, 323, 1147
ApeKI GCWGC 6 cut(s) 20, 1111, 1114, 1117, 1235, 1445
ApoI RAATTY 4 cut(s) 336, 739, 841, 1267
AseI ATTAAT 1 cut(s) 1293
Asp700I GAANNNNTTC 1 cut(s) 1073
Asp718I GGTACC 1 cut(s) 1523
AspLEI GCGC 1 cut(s) 579
AspS9I GGNCC 2 cut(s) 119, 982
AsuC2I CCSGG 1 cut(s) 684
AsuHPI GGTGA 6 cut(s) 29, 239, 320, 493, 928, 1438
AsuII TTCGAA 1 cut(s) 245
AsuNHI GCTAGC 1 cut(s) 275
AvaII GGWCC 2 cut(s) 119, 982
BaeGI GKGCMC 1 cut(s) 511
BanI GGYRCC 1 cut(s) 1523
BbsI GAAGAC 3 cut(s) 465, 1284, 1494
BbvCI CCTCAGC 1 cut(s) 642
BbvI GCAGC 6 cut(s) 7, 1123, 1126, 1129, 1247, 1457
BccI CCATC 7 cut(s) 8, 48, 994, 1136, 1317, 1465, 1480
BciT130I CCWGG 2 cut(s) 117, 941
BclI TGATCA 3 cut(s) 28, 301, 1384
BcnI CCSGG 1 cut(s) 684
BcoDI GTCTC 4 cut(s) 159, 175, 193, 269
BfaI CTAG 3 cut(s) 276, 999, 1536
BfmI CTRYAG 3 cut(s) 233, 1039, 1272
BisI GCNGC 7 cut(s) 21, 254, 1112, 1115, 1118, 1236, 1446
BlsI GCNGC 7 cut(s) 22, 255, 1113, 1116, 1119, 1237, 1447
Bme1390I CCNGG 3 cut(s) 117, 684, 941
Bme18I GGWCC 2 cut(s) 119, 982
BmgT120I GGNCC 2 cut(s) 119, 982
BmiI GGNNCC 5 cut(s) 146, 653, 984, 1354, 1525
BmrFI CCNGG 3 cut(s) 117, 684, 941
BmrI ACTGGG 1 cut(s) 1308
BmsI GCATC 2 cut(s) 103, 757
BmtI GCTAGC 1 cut(s) 279
BmuI ACTGGG 1 cut(s) 1308
BpiI GAAGAC 3 cut(s) 465, 1284, 1494
BpmI CTGGAG 1 cut(s) 312
Bpu10I CCTNAGC 1 cut(s) 642
Bpu14I TTCGAA 1 cut(s) 245
BpuEI CTTGAG 1 cut(s) 1503
BpuMI CCSGG 1 cut(s) 684
BsaBI GATNNNNATC 1 cut(s) 784
BsaI GGTCTC 1 cut(s) 159
BsaJI CCNNGG 1 cut(s) 939
BsaXI ACNNNNNCTCC 4 cut(s) 310, 340, 1180, 1210
Bsc4I CCNNNNNNNGG 5 cut(s) 141, 198, 321, 352, 353
Bse1I ACTGG 2 cut(s) 1314, 1356
Bse3DI GCAATG 2 cut(s) 228, 554
Bse8I GATNNNNATC 1 cut(s) 784
BseBI CCWGG 2 cut(s) 117, 941
BseDI CCNNGG 1 cut(s) 939
BseGI GGATG 2 cut(s) 289, 1309
BseJI GATNNNNATC 1 cut(s) 784
BseLI CCNNNNNNNGG 5 cut(s) 141, 198, 321, 352, 353
BseMI GCAATG 2 cut(s) 228, 554
BseMII CTCAG 4 cut(s) 280, 510, 633, 1523
BseNI ACTGG 2 cut(s) 1314, 1356
BseRI GAGGAG 5 cut(s) 75, 181, 792, 916, 1365
BseSI GKGCMC 1 cut(s) 511
BseXI GCAGC 6 cut(s) 7, 1123, 1126, 1129, 1247, 1457
BseYI CCCAGC 1 cut(s) 539
Bsh1236I CGCG 2 cut(s) 1285, 1376
BshFI GGCC 5 cut(s) 115, 253, 314, 325, 1149
BshNI GGYRCC 1 cut(s) 1523
BsiSI CCGG 1 cut(s) 683
BslI CCNNNNNNNGG 5 cut(s) 141, 198, 321, 352, 353
BsmAI GTCTC 4 cut(s) 159, 175, 193, 269
BsmBI CGTCTC 1 cut(s) 193
BsmI GAATGC 2 cut(s) 678, 724
BsnI GGCC 5 cut(s) 115, 253, 314, 325, 1149
Bso31I GGTCTC 1 cut(s) 159
Bsp119I TTCGAA 1 cut(s) 245
Bsp1286I GDGCHC 1 cut(s) 511
Bsp1407I TGTACA 1 cut(s) 1212
Bsp143I GATC 9 cut(s) 28, 229, 301, 367, 779, 1286, 1321, 1384, 1474
BspACI CCGC 3 cut(s) 254, 1283, 1374
BspANI GGCC 5 cut(s) 115, 253, 314, 325, 1149
BspCNI CTCAG 4 cut(s) 279, 511, 634, 1522
BspFNI CGCG 2 cut(s) 1285, 1376
BspHI TCATGA 1 cut(s) 1381
BspLI GGNNCC 5 cut(s) 146, 653, 984, 1354, 1525
BspMAI CTGCAG 1 cut(s) 237
BspOI GCTAGC 1 cut(s) 279
BspPI GGATC 3 cut(s) 787, 1281, 1482
BspT104I TTCGAA 1 cut(s) 245
BspT107I GGYRCC 1 cut(s) 1523
BspTNI GGTCTC 1 cut(s) 159
BsrDI GCAATG 2 cut(s) 228, 554
BsrGI TGTACA 1 cut(s) 1212
BsrI ACTGG 2 cut(s) 1314, 1356
BssECI CCNNGG 1 cut(s) 939
BssMI GATC 9 cut(s) 28, 229, 301, 367, 779, 1286, 1321, 1384, 1474
Bst2UI CCWGG 2 cut(s) 117, 941
Bst4CI ACNGT 3 cut(s) 444, 656, 1043
Bst6I CTCTTC 5 cut(s) 113, 603, 609, 874, 1064
BstAPI GCANNNNNTGC 2 cut(s) 668, 1451
BstAUI TGTACA 1 cut(s) 1212
BstBI TTCGAA 1 cut(s) 245
BstC8I GCNNGC 2 cut(s) 237, 277
BstDEI CTNAG 4 cut(s) 266, 519, 642, 1509
BstF5I GGATG 2 cut(s) 289, 1309
BstFNI CGCG 2 cut(s) 1285, 1376
BstHHI GCGC 1 cut(s) 579
BstKTI GATC 9 cut(s) 31, 232, 304, 370, 782, 1289, 1324, 1387, 1477
BstMAI GTCTC 4 cut(s) 159, 175, 193, 269
BstMBI GATC 9 cut(s) 28, 229, 301, 367, 779, 1286, 1321, 1384, 1474
BstMWI GCNNNNNNNGC 5 cut(s) 515, 668, 903, 1117, 1451
BstNI CCWGG 2 cut(s) 117, 941
BstNSI RCATGY 1 cut(s) 1213
BstSCI CCNGG 3 cut(s) 115, 682, 939
BstSFI CTRYAG 3 cut(s) 233, 1039, 1272
BstSLI GKGCMC 1 cut(s) 511
BstUI CGCG 2 cut(s) 1285, 1376
BstV1I GCAGC 6 cut(s) 7, 1123, 1126, 1129, 1247, 1457
BstV2I GAAGAC 3 cut(s) 465, 1284, 1494
BstX2I RGATCY 1 cut(s) 1474
BstXI CCANNNNNNTGG 1 cut(s) 47
BstYI RGATCY 1 cut(s) 1474
BsuRI GGCC 5 cut(s) 115, 253, 314, 325, 1149
BtsCI GGATG 2 cut(s) 289, 1309
BtsIMutI CAGTG 2 cut(s) 449, 1048
Cac8I GCNNGC 2 cut(s) 237, 277
CaiI CAGNNNCTG 1 cut(s) 1451
CciI TCATGA 1 cut(s) 1381
CfoI GCGC 1 cut(s) 579
Cfr13I GGNCC 2 cut(s) 119, 982
Csp6I GTAC 2 cut(s) 1213, 1524
CviAII CATG 9 cut(s) 47, 305, 316, 352, 638, 1063, 1210, 1382, 1411
CviQI GTAC 2 cut(s) 1213, 1524
DdeI CTNAG 4 cut(s) 266, 519, 642, 1509
DpnI GATC 9 cut(s) 30, 231, 303, 369, 781, 1288, 1323, 1386, 1476
DpnII GATC 9 cut(s) 28, 229, 301, 367, 779, 1286, 1321, 1384, 1474
EaeI YGGCCR 1 cut(s) 251
Eam1104I CTCTTC 5 cut(s) 113, 603, 609, 874, 1064
EarI CTCTTC 5 cut(s) 113, 603, 609, 874, 1064
Eco147I AGGCCT 1 cut(s) 115
Eco31I GGTCTC 1 cut(s) 159
Eco32I GATATC 1 cut(s) 586
Eco47I GGWCC 2 cut(s) 119, 982
Eco57I CTGAAG 2 cut(s) 94, 627
EcoRI GAATTC 2 cut(s) 739, 1267
EcoRII CCWGG 2 cut(s) 115, 939
EcoRV GATATC 1 cut(s) 586
Esp3I CGTCTC 1 cut(s) 193
FaeI CATG 9 cut(s) 50, 308, 319, 355, 641, 1066, 1213, 1385, 1414
FatI CATG 9 cut(s) 46, 304, 315, 351, 637, 1062, 1209, 1381, 1410
FauI CCCGC 1 cut(s) 1290
FauNDI CATATG 1 cut(s) 1392
FbaI TGATCA 3 cut(s) 28, 301, 1384
Fnu4HI GCNGC 7 cut(s) 21, 254, 1112, 1115, 1118, 1236, 1446
FokI GGATG 2 cut(s) 296, 1296
Fsp4HI GCNGC 7 cut(s) 21, 254, 1112, 1115, 1118, 1236, 1446
FspBI CTAG 3 cut(s) 276, 999, 1536
GlaI GCGC 1 cut(s) 578
GluI GCNGC 7 cut(s) 21, 254, 1112, 1115, 1118, 1236, 1446
GsaI CCCAGC 1 cut(s) 543
GsuI CTGGAG 1 cut(s) 312
HaeIII GGCC 5 cut(s) 115, 253, 314, 325, 1149
HapII CCGG 1 cut(s) 683
HhaI GCGC 1 cut(s) 579
Hin1II CATG 9 cut(s) 50, 308, 319, 355, 641, 1066, 1213, 1385, 1414
Hin6I GCGC 1 cut(s) 577
HinP1I GCGC 1 cut(s) 577
HindIII AAGCTT 1 cut(s) 524
HinfI GANTC 7 cut(s) 183, 709, 1034, 1169, 1253, 1378, 1429
HpaII CCGG 1 cut(s) 683
HphI GGTGA 6 cut(s) 29, 239, 320, 493, 928, 1438
Hpy166II GTNNAC 5 cut(s) 447, 1007, 1096, 1215, 1243
Hpy188I TCNGA 6 cut(s) 28, 269, 982, 991, 1321, 1479
Hpy188III TCNNGA 4 cut(s) 299, 329, 589, 1382
Hpy8I GTNNAC 5 cut(s) 447, 1007, 1096, 1215, 1243
HpyAV CCTTC 4 cut(s) 370, 819, 960, 973
HpyCH4III ACNGT 3 cut(s) 444, 656, 1043
HpyCH4V TGCA 6 cut(s) 167, 221, 235, 1066, 1157, 1454
HpyF10VI GCNNNNNNNGC 5 cut(s) 515, 668, 903, 1117, 1451
HpyF3I CTNAG 4 cut(s) 266, 519, 642, 1509
Hsp92II CATG 9 cut(s) 50, 308, 319, 355, 641, 1066, 1213, 1385, 1414
HspAI GCGC 1 cut(s) 577
KpnI GGTACC 1 cut(s) 1527
Ksp22I TGATCA 3 cut(s) 28, 301, 1384
Kzo9I GATC 9 cut(s) 28, 229, 301, 367, 779, 1286, 1321, 1384, 1474
LmnI GCTCC 2 cut(s) 929, 1352
Lsp1109I GCAGC 6 cut(s) 7, 1123, 1126, 1129, 1247, 1457
LweI GCATC 2 cut(s) 103, 757
MaeI CTAG 3 cut(s) 276, 999, 1536
MaeIII GTNAC 2 cut(s) 880, 1186
MalI GATC 9 cut(s) 30, 231, 303, 369, 781, 1288, 1323, 1386, 1476
MboI GATC 9 cut(s) 28, 229, 301, 367, 779, 1286, 1321, 1384, 1474
MflI RGATCY 1 cut(s) 1474
MhlI GDGCHC 1 cut(s) 511
MluCI AATT 7 cut(s) 247, 336, 739, 841, 1135, 1267, 1399
MlyI GAGTC 1 cut(s) 177
MroXI GAANNNNTTC 1 cut(s) 1073
MseI TTAA 3 cut(s) 431, 1293, 1343
MslI CAYNNNNRTG 3 cut(s) 45, 48, 717
MspA1I CMGCKG 2 cut(s) 1031, 1238
MspI CCGG 1 cut(s) 683
MspR9I CCNGG 3 cut(s) 117, 684, 941
Mva1269I GAATGC 2 cut(s) 678, 724
MvaI CCWGG 2 cut(s) 117, 941
MvnI CGCG 2 cut(s) 1285, 1376
MwoI GCNNNNNNNGC 5 cut(s) 515, 668, 903, 1117, 1451
NciI CCSGG 1 cut(s) 684
NdeI CATATG 1 cut(s) 1392
NdeII GATC 9 cut(s) 28, 229, 301, 367, 779, 1286, 1321, 1384, 1474
NheI GCTAGC 1 cut(s) 275
NlaIII CATG 9 cut(s) 50, 308, 319, 355, 641, 1066, 1213, 1385, 1414
NlaIV GGNNCC 5 cut(s) 146, 653, 984, 1354, 1525
NmeAIII GCCGAG 1 cut(s) 282
NmuCI GTSAC 1 cut(s) 1186
NspI RCATGY 1 cut(s) 1213
NspV TTCGAA 1 cut(s) 245
PagI TCATGA 1 cut(s) 1381
PceI AGGCCT 1 cut(s) 115
PciI ACATGT 1 cut(s) 1209
PctI GAATGC 2 cut(s) 678, 724
PdmI GAANNNNTTC 1 cut(s) 1073
PfeI GAWTC 6 cut(s) 709, 1034, 1169, 1253, 1378, 1429
PflMI CCANNNNNTGG 1 cut(s) 321
PfoI TCCNGGA 1 cut(s) 682
PkrI GCNGC 7 cut(s) 22, 255, 1113, 1116, 1119, 1237, 1447
PleI GAGTC 1 cut(s) 177
PpsI GAGTC 1 cut(s) 177
PscI ACATGT 1 cut(s) 1209
PshBI ATTAAT 1 cut(s) 1293
Psp6I CCWGG 2 cut(s) 115, 939
PspFI CCCAGC 1 cut(s) 539
PspGI CCWGG 2 cut(s) 115, 939
PspN4I GGNNCC 5 cut(s) 146, 653, 984, 1354, 1525
PspPI GGNCC 2 cut(s) 119, 982
PstI CTGCAG 1 cut(s) 237
PstNI CAGNNNCTG 1 cut(s) 1451
PsuI RGATCY 1 cut(s) 1474
PvuII CAGCTG 2 cut(s) 1031, 1238
RsaI GTAC 2 cut(s) 1214, 1525
RsaNI GTAC 2 cut(s) 1213, 1524
RseI CAYNNNNRTG 3 cut(s) 45, 48, 717
SaqAI TTAA 3 cut(s) 431, 1293, 1343
SatI GCNGC 7 cut(s) 21, 254, 1112, 1115, 1118, 1236, 1446
Sau3AI GATC 9 cut(s) 28, 229, 301, 367, 779, 1286, 1321, 1384, 1474
Sau96I GGNCC 2 cut(s) 119, 982
SchI GAGTC 1 cut(s) 177
ScrFI CCNGG 3 cut(s) 117, 684, 941
SduI GDGCHC 1 cut(s) 511
SfaNI GCATC 2 cut(s) 103, 757
SfcI CTRYAG 3 cut(s) 233, 1039, 1272
SfuI TTCGAA 1 cut(s) 245
SinI GGWCC 2 cut(s) 119, 982
SmiMI CAYNNNNRTG 3 cut(s) 45, 48, 717
SmlI CTYRAG 1 cut(s) 1518
SmoI CTYRAG 1 cut(s) 1518
Sse9I AATT 7 cut(s) 247, 336, 739, 841, 1135, 1267, 1399
SseBI AGGCCT 1 cut(s) 115
SsiI CCGC 3 cut(s) 254, 1283, 1374
SspMI CTAG 3 cut(s) 276, 999, 1536
StuI AGGCCT 1 cut(s) 115
StyD4I CCNGG 3 cut(s) 115, 682, 939
TaaI ACNGT 3 cut(s) 444, 656, 1043
TaqI TCGA 2 cut(s) 245, 1131
TasI AATT 7 cut(s) 247, 336, 739, 841, 1135, 1267, 1399
TatI WGTACW 1 cut(s) 1212
TauI GCSGC 1 cut(s) 256
TfiI GAWTC 6 cut(s) 709, 1034, 1169, 1253, 1378, 1429
Tru1I TTAA 3 cut(s) 431, 1293, 1343
Tru9I TTAA 3 cut(s) 431, 1293, 1343
TscAI CASTG 2 cut(s) 449, 1048
TseFI GTSAC 1 cut(s) 1186
TseI GCWGC 6 cut(s) 20, 1111, 1114, 1117, 1235, 1445
Tsp45I GTSAC 1 cut(s) 1186
TspDTI ATGAA 7 cut(s) 300, 408, 468, 1051, 1350, 1421, 1427
TspGWI ACGGA 1 cut(s) 114
TspRI CASTG 2 cut(s) 449, 1048
Van91I CCANNNNNTGG 1 cut(s) 321
VpaK11BI GGWCC 2 cut(s) 119, 982
VspI ATTAAT 1 cut(s) 1293
XapI RAATTY 4 cut(s) 336, 739, 841, 1267
XceI RCATGY 1 cut(s) 1213
XmnI GAANNNNTTC 1 cut(s) 1073
XspI CTAG 3 cut(s) 276, 999, 1536
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.