Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp06

Orthogroup ID

OG0004958

Physical Location & Seq

Genomic Coordinates Reverse (-)

4150943 .. 4153073

Gene Structure 2131 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.6G059700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1419 bp

ATGCATAGAACAGGTCCTCCATTGACAGCCATAGACAGGTTCCTGTGGGGAAGCCAGAGCAATTTCTCTCACCAAAACAATGCAAGCAGCAAAGCAAATGTGGTTTCCACAAATGGGTTGTTAGGTTTTTCTTCTTTTGGTGGTGCAATTGGCCATGAGGCTTCTTGTTGGCCTAGCTATGGTGCTGCTGCTCAATATCCCCAAGAGGTAAGCTTTCTGGATGGGCTTTTGGGTGATCATGGAGAGCCCTTGATGATGTCTTGGAGTGGCCAGGCAGAGCAAAACCCTAATACTGGTTTCATAGAAGAAGCAAAGGTTTCAGAAAGGAGGGTGGGAAAGAGAGCTAGAAAAGGTTTAACTGCTGCAGCTTTAATAAAGGGACAGTGGACTGATGAAGAAGACAGGAAGCTGATCAGGTTGGTGAAGCAATATGGAGTGAGAAAATGGGCACAGATAGCTGAGAAGCTGGTGGGTAGGGCTGGCAAGCAGTGTCGAGAGAGATGGCATAATCATTTGCGCCCTGATATCAAGAAAGATAGCTGGACTGAAGAGGAAGAGACGATACTTGTGGACGCTCATACTGAGGTTGGGAACCGTTGGGCAGAGATTGCGAAACGCATTCCTGGAAGAACCGAAAACGCCATCAAGAACCATTGGAATGCCACAAAAAGGAGGCAGAATTCAAGGAGGAAGAACAGGCAGGCAGAGGGGAAAGATGGAAACAACAACAAGAAGCCTCAGTCTTCCATACTCCAAAACTACATCAGGAGCAAGAACCTCATGAGCAACAACAACAATAATAATAACAACGCCGCCTCCCCAAATGTTTCCACTATGAGCAACAACACCCCAACCAGTTCTTCCACTCTCTCTCATGAAAACCCATCAAAAACCCACCTCAACATTTTGGCCACAGAGCCCTCTGACCAGTCCACAACTAGCAATTGCTGCGACTCTCCTTTGAATTTGGGTGATACATTATACAACGATGAGGAGCTTCATTTCATGCAAACTTTCTTCACCAACAATGTTCACACTTTCAATCCTCATCAGCAGCATCCATCCCATTCCATTGACAGCAGCAACAACAGCAACAACATTGGCCTAATTGTTAGTCCAGTGGAGCCTACACAAAATGCTATTAATCCCACTACTTCTACTACTCCTACCCCCCTCTACTCTGACCTTTACCTTTCATACCTCTTAAATGGGACAGCCAACTCATCATCATCTTTTAGTTCCACTGATCATCATCACTTGGGTTTTTACAACACAAGCATGGAATATTTGATGGCACATGATCAATATCATGAAGCTGCTGCTGCTGCTGCTTCTTCAAATGAAAAGAGAGAGATGGATTTGATAGAGATGGTTTCTTCTTCTCAATTTGCTCAGGGTGCCAACAGAACCAGCTTCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000981 GO:0000988 GO:0000989 GO:0001067 GO:0001076 GO:0001134 GO:0001135 GO:0003006 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0006357 GO:0006935 GO:0007275 GO:0008150 GO:0009553 GO:0009605 GO:0009856 GO:0009889 GO:0010183 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0022414 GO:0031323 GO:0031326 GO:0032501 GO:0032502 GO:0040011 GO:0042221 GO:0042330 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0044212 GO:0044424 GO:0044464 GO:0044706 GO:0045595 GO:0045691 GO:0045697 GO:0048229 GO:0048856 GO:0048868 GO:0050789 GO:0050793 GO:0050794 GO:0050896 GO:0050918 GO:0051171 GO:0051239 GO:0051252 GO:0051704 GO:0060255 GO:0065007 GO:0080090 GO:0097159 GO:0140110 GO:1901363 GO:1903506 GO:2000026 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Myb_DNA-binding

Protein Analysis

473

Amino Acids

52.49

Weight (kDa)

7.06

Isoelectric Point (pI)

51.79

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0004958)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G11050 AT5G58850
fragaria_vesca	FvH4_3g38310 FvH4_3g38320
malus_domestica	MD03G1073100.v1.1 MD11G1079000.v1.1
prunus_persica	Prupe.6G059700_v2.0.a1
pyrus_communis	pycom03g05910
rosa_chinensis	RchiOBHm_Chr5g0068891 RchiOBHm_Chr7g0211831
rosa_laevigata	RLG00000002962 RLG00000036017
rosa_multiflora	Rmu_sc0009005.1_g000013 Rmu_sc0013825.1_g000001 Rmu_sc0016160.1_g000005 Rmu_ssc0000378.1_g000003
rosa_roxburghii	Rroxscaffold_1G00011840 Rroxscaffold_3G00247400
rosa_rugosa	Rorug05G0394200 Rorug07G0129000
rosa_samantha	Rh5AG451300 Rh5BG470000 Rh5CG492500 Rh5DG483100 Rh7AG261700 Rh7BG255300 Rh7CG278300 Rh7DG268300
rosa_wichuraiana	Rw5G042150 Rw7G022320

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	1397
AciI	CCGC	1 cut(s)	813
AcoI	YGGCCR	3 cut(s)	151, 268, 909
AcsI	RAATTY	2 cut(s)	679, 964
AcuI	CTGAAG	1 cut(s)	567
AfiI	CCNNNNNNNGG	5 cut(s)	36, 114, 179, 293, 669
AgsI	TTSAA	4 cut(s)	684, 964, 1042, 1338
AjnI	CCWGG	2 cut(s)	270, 622
AjuI	GAANNNNNNNTTGG	2 cut(s)	844, 876
AloI	GAACNNNNNNTCC	1 cut(s)	33
Alw26I	GTCTC	1 cut(s)	551
AlwNI	CAGNNNCTG	1 cut(s)	1416
AoxI	GGCC	5 cut(s)	151, 170, 268, 909, 1102
ApoI	RAATTY	2 cut(s)	679, 964
AseI	ATTAAT	1 cut(s)	1143
AspLEI	GCGC	1 cut(s)	519
AspS9I	GGNCC	1 cut(s)	14
AsuHPI	GGTGA	5 cut(s)	62, 245, 433, 983, 1012
AvaII	GGWCC	1 cut(s)	14
BaeGI	GKGCMC	1 cut(s)	451
BalI	TGGCCA	3 cut(s)	153, 270, 911
BanI	GGYRCC	1 cut(s)	1397
BanII	GRGCYC	2 cut(s)	249, 921
BarI	GAAGNNNNNNTAC	2 cut(s)	546, 578
BbsI	GAAGAC	2 cut(s)	405, 735
BccI	CCATC	9 cut(s)	215, 495, 650, 710, 892, 1069, 1285, 1348, 1363
BciT130I	CCWGG	2 cut(s)	272, 624
BclI	TGATCA	4 cut(s)	235, 411, 1246, 1300
BcoDI	GTCTC	1 cut(s)	551
BfaI	CTAG	3 cut(s)	174, 345, 939
BfmI	CTRYAG	1 cut(s)	363
Bme1390I	CCNGG	2 cut(s)	272, 624
Bme18I	GGWCC	1 cut(s)	14
BmgT120I	GGNCC	1 cut(s)	14
BmiI	GGNNCC	4 cut(s)	41, 593, 1125, 1399
BmrFI	CCNGG	2 cut(s)	272, 624
BmsI	GCATC	1 cut(s)	1066
BpiI	GAAGAC	2 cut(s)	405, 735
Bpu10I	CCTNAGC	1 cut(s)	1392
BsaBI	GATNNNNATC	2 cut(s)	1251, 1305
BsaXI	ACNNNNNCTCC	3 cut(s)	31, 800, 830
Bsc4I	CCNNNNNNNGG	5 cut(s)	36, 114, 179, 293, 669
Bse1I	ACTGG	4 cut(s)	298, 855, 928, 1118
Bse8I	GATNNNNATC	2 cut(s)	1251, 1305
BseBI	CCWGG	2 cut(s)	272, 624
BseGI	GGATG	3 cut(s)	226, 1057, 1061
BseJI	GATNNNNATC	2 cut(s)	1251, 1305
BseLI	CCNNNNNNNGG	5 cut(s)	36, 114, 179, 293, 669
BseMII	CTCAG	4 cut(s)	450, 573, 752, 1406
BseNI	ACTGG	4 cut(s)	298, 855, 928, 1118
BseRI	GAGGAG	1 cut(s)	1007
BseSI	GKGCMC	1 cut(s)	451
BshFI	GGCC	5 cut(s)	153, 172, 270, 911, 1104
BshNI	GGYRCC	1 cut(s)	1397
BslFI	GGGAC	2 cut(s)	393, 1225
BslI	CCNNNNNNNGG	5 cut(s)	36, 114, 179, 293, 669
BsmAI	GTCTC	1 cut(s)	551
BsmBI	CGTCTC	1 cut(s)	551
BsmFI	GGGAC	2 cut(s)	393, 1225
BsmI	GAATGC	2 cut(s)	618, 664
BsnI	GGCC	5 cut(s)	153, 172, 270, 911, 1104
Bsp1286I	GDGCHC	3 cut(s)	249, 451, 921
Bsp143I	GATC	4 cut(s)	235, 411, 1246, 1300
BspACI	CCGC	1 cut(s)	813
BspANI	GGCC	5 cut(s)	153, 172, 270, 911, 1104
BspCNI	CTCAG	4 cut(s)	451, 574, 751, 1405
BspHI	TCATGA	3 cut(s)	780, 874, 1309
BspLI	GGNNCC	4 cut(s)	41, 593, 1125, 1399
BspMAI	CTGCAG	1 cut(s)	367
BspT107I	GGYRCC	1 cut(s)	1397
BsrI	ACTGG	4 cut(s)	298, 855, 928, 1118
BssMI	GATC	4 cut(s)	235, 411, 1246, 1300
Bst2UI	CCWGG	2 cut(s)	272, 624
Bst4CI	ACNGT	2 cut(s)	384, 596
Bst6I	CTCTTC	2 cut(s)	543, 549
BstAPI	GCANNNNNTGC	2 cut(s)	608, 948
BstC8I	GCNNGC	4 cut(s)	85, 481, 485, 702
BstDEI	CTNAG	4 cut(s)	459, 582, 738, 1392
BstF5I	GGATG	3 cut(s)	226, 1057, 1061
BstHHI	GCGC	1 cut(s)	519
BstKTI	GATC	4 cut(s)	238, 414, 1249, 1303
BstMAI	GTCTC	1 cut(s)	551
BstMBI	GATC	4 cut(s)	235, 411, 1246, 1300
BstMWI	GCNNNNNNNGC	8 cut(s)	455, 608, 948, 1089, 1322, 1325, 1328, 1397
BstNI	CCWGG	2 cut(s)	272, 624
BstSCI	CCNGG	2 cut(s)	270, 622
BstSFI	CTRYAG	1 cut(s)	363
BstSLI	GKGCMC	1 cut(s)	451
BstV2I	GAAGAC	2 cut(s)	405, 735
BsuRI	GGCC	5 cut(s)	153, 172, 270, 911, 1104
BtsCI	GGATG	3 cut(s)	226, 1057, 1061
BtsI	GCAGTG	1 cut(s)	494
BtsIMutI	CAGTG	4 cut(s)	389, 494, 1125, 1242
Cac8I	GCNNGC	4 cut(s)	85, 481, 485, 702
CaiI	CAGNNNCTG	1 cut(s)	1416
CciI	TCATGA	3 cut(s)	780, 874, 1309
CfoI	GCGC	1 cut(s)	519
Cfr13I	GGNCC	1 cut(s)	14
CseI	GACGC	1 cut(s)	581
CviAII	CATG	8 cut(s)	155, 239, 781, 875, 1006, 1279, 1298, 1310
DdeI	CTNAG	4 cut(s)	459, 582, 738, 1392
DpnI	GATC	4 cut(s)	237, 413, 1248, 1302
DpnII	GATC	4 cut(s)	235, 411, 1246, 1300
EaeI	YGGCCR	3 cut(s)	151, 268, 909
Eam1104I	CTCTTC	2 cut(s)	543, 549
EarI	CTCTTC	2 cut(s)	543, 549
Eco24I	GRGCYC	2 cut(s)	249, 921
Eco32I	GATATC	1 cut(s)	526
Eco47I	GGWCC	1 cut(s)	14
Eco57I	CTGAAG	1 cut(s)	567
EcoO109I	RGGNCCY	1 cut(s)	14
EcoRI	GAATTC	1 cut(s)	679
EcoRII	CCWGG	2 cut(s)	270, 622
EcoRV	GATATC	1 cut(s)	526
EcoT22I	ATGCAT	1 cut(s)	6
EcoT38I	GRGCYC	2 cut(s)	249, 921
Esp3I	CGTCTC	1 cut(s)	551
FaeI	CATG	8 cut(s)	158, 242, 784, 878, 1009, 1282, 1301, 1313
FaqI	GGGAC	2 cut(s)	393, 1225
FatI	CATG	8 cut(s)	154, 238, 780, 874, 1005, 1278, 1297, 1309
FbaI	TGATCA	4 cut(s)	235, 411, 1246, 1300
FokI	GGATG	3 cut(s)	233, 1044, 1048
FriOI	GRGCYC	2 cut(s)	249, 921
FspBI	CTAG	3 cut(s)	174, 345, 939
GlaI	GCGC	1 cut(s)	518
HaeIII	GGCC	5 cut(s)	153, 172, 270, 911, 1104
HgaI	GACGC	1 cut(s)	581
HhaI	GCGC	1 cut(s)	519
Hin1II	CATG	8 cut(s)	158, 242, 784, 878, 1009, 1282, 1301, 1313
Hin6I	GCGC	1 cut(s)	517
HinP1I	GCGC	1 cut(s)	517
HindIII	AAGCTT	1 cut(s)	211
HinfI	GANTC	1 cut(s)	953
HphI	GGTGA	5 cut(s)	62, 245, 433, 983, 1012
Hpy166II	GTNNAC	4 cut(s)	387, 571, 933, 1033
Hpy188I	TCNGA	4 cut(s)	322, 925, 1183, 1418
Hpy188III	TCNNGA	8 cut(s)	218, 494, 529, 646, 766, 781, 875, 1310
Hpy8I	GTNNAC	4 cut(s)	387, 571, 933, 1033
HpyCH4III	ACNGT	2 cut(s)	384, 596
HpyCH4V	TGCA	5 cut(s)	4, 83, 146, 365, 1009
HpyF10VI	GCNNNNNNNGC	8 cut(s)	455, 608, 948, 1089, 1322, 1325, 1328, 1397
HpyF3I	CTNAG	4 cut(s)	459, 582, 738, 1392
Hsp92II	CATG	8 cut(s)	158, 242, 784, 878, 1009, 1282, 1301, 1313
HspAI	GCGC	1 cut(s)	517
Ksp22I	TGATCA	4 cut(s)	235, 411, 1246, 1300
Kzo9I	GATC	4 cut(s)	235, 411, 1246, 1300
LmnI	GCTCC	3 cut(s)	768, 994, 1123
LweI	GCATC	1 cut(s)	1066
MaeI	CTAG	3 cut(s)	174, 345, 939
MalI	GATC	4 cut(s)	237, 413, 1248, 1302
MboI	GATC	4 cut(s)	235, 411, 1246, 1300
MfeI	CAATTG	2 cut(s)	147, 943
MhlI	GDGCHC	3 cut(s)	249, 451, 921
MlsI	TGGCCA	3 cut(s)	153, 270, 911
MluCI	AATT	7 cut(s)	61, 147, 679, 943, 964, 1107, 1385
MluNI	TGGCCA	3 cut(s)	153, 270, 911
MlyI	GAGTC	1 cut(s)	947
Mox20I	TGGCCA	3 cut(s)	153, 270, 911
Mph1103I	ATGCAT	1 cut(s)	6
MscI	TGGCCA	3 cut(s)	153, 270, 911
MseI	TTAA	4 cut(s)	356, 371, 1143, 1205
MslI	CAYNNNNRTG	2 cut(s)	657, 1277
Msp20I	TGGCCA	3 cut(s)	153, 270, 911
MspR9I	CCNGG	2 cut(s)	272, 624
MunI	CAATTG	2 cut(s)	147, 943
Mva1269I	GAATGC	2 cut(s)	618, 664
MvaI	CCWGG	2 cut(s)	272, 624
MwoI	GCNNNNNNNGC	8 cut(s)	455, 608, 948, 1089, 1322, 1325, 1328, 1397
NdeII	GATC	4 cut(s)	235, 411, 1246, 1300
NlaIII	CATG	8 cut(s)	158, 242, 784, 878, 1009, 1282, 1301, 1313
NlaIV	GGNNCC	4 cut(s)	41, 593, 1125, 1399
NsiI	ATGCAT	1 cut(s)	6
PagI	TCATGA	3 cut(s)	780, 874, 1309
PctI	GAATGC	2 cut(s)	618, 664
PfoI	TCCNGGA	1 cut(s)	622
PleI	GAGTC	1 cut(s)	947
PpsI	GAGTC	1 cut(s)	947
PpuMI	RGGWCCY	1 cut(s)	14
PshBI	ATTAAT	1 cut(s)	1143
Psp5II	RGGWCCY	1 cut(s)	14
Psp6I	CCWGG	2 cut(s)	270, 622
PspGI	CCWGG	2 cut(s)	270, 622
PspN4I	GGNNCC	4 cut(s)	41, 593, 1125, 1399
PspPI	GGNCC	1 cut(s)	14
PspPPI	RGGWCCY	1 cut(s)	14
PstI	CTGCAG	1 cut(s)	367
PstNI	CAGNNNCTG	1 cut(s)	1416
RseI	CAYNNNNRTG	2 cut(s)	657, 1277
SaqAI	TTAA	4 cut(s)	356, 371, 1143, 1205
Sau3AI	GATC	4 cut(s)	235, 411, 1246, 1300
Sau96I	GGNCC	1 cut(s)	14
SchI	GAGTC	1 cut(s)	947
ScrFI	CCNGG	2 cut(s)	272, 624
SduI	GDGCHC	3 cut(s)	249, 451, 921
SfaNI	GCATC	1 cut(s)	1066
SfcI	CTRYAG	1 cut(s)	363
SinI	GGWCC	1 cut(s)	14
SmiMI	CAYNNNNRTG	2 cut(s)	657, 1277
Sse9I	AATT	7 cut(s)	61, 147, 679, 943, 964, 1107, 1385
SsiI	CCGC	1 cut(s)	813
SspI	AATATT	1 cut(s)	1286
SspMI	CTAG	3 cut(s)	174, 345, 939
StyD4I	CCNGG	2 cut(s)	270, 622
TaaI	ACNGT	2 cut(s)	384, 596
TaqI	TCGA	1 cut(s)	493
TasI	AATT	7 cut(s)	61, 147, 679, 943, 964, 1107, 1385
TauI	GCSGC	1 cut(s)	815
Tru1I	TTAA	4 cut(s)	356, 371, 1143, 1205
Tru9I	TTAA	4 cut(s)	356, 371, 1143, 1205
TscAI	CASTG	4 cut(s)	389, 494, 1125, 1249
TspDTI	ATGAA	8 cut(s)	289, 408, 891, 989, 994, 1185, 1326, 1356
TspRI	CASTG	4 cut(s)	389, 494, 1125, 1249
VpaK11BI	GGWCC	1 cut(s)	14
VspI	ATTAAT	1 cut(s)	1143
XapI	RAATTY	2 cut(s)	679, 964
XspI	CTAG	3 cut(s)	174, 345, 939
Zsp2I	ATGCAT	1 cut(s)	6

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.