Rmu_sc0013825.1_g000001
MYB Family

SANT SWI3, ADA2, N-CoR and TFIIIB'' DNA-binding domains

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0013825.1
Physical Location & Seq
Forward (+)
1637 .. 3818
2182 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0013825.1_g000001.1.cds

Sequence Viewer

Length: 1545 bp
atggaaggagaagatggtgctgcttctgatcatcttcaccatcatcatggtgtttatgggtttcaaaacaatcacatacaaactcctcatcagcatcacaaccaactcttcaggcctggtcctccgttgacagccatagacaggttcctgtggtctcaaaacaatgcaaagaacaaagagagactcgtctcctcaaatgggttttcctcatttggtggtgcaatgggtgatctgcagacttgttcgaattggccgccgagtagtctcagagaggctagcttggatgaactgctttttcttgatcatggtgaggccatgacttggcctccagagaaaattcaaaaccctaacatggggttcaaagaagatcaagtgaaggtgggttctaaaggggtgggaaagaaagctaaaaagggttcatctgtgcctttaatcaaaggacagtggacagatgaagaagacagaaagctgatgagattggtgaagcaatatggagtgaggaaatgggcacagatagctgagaagcttgtgggtagagctgggaagcaatgtagagaaaggtggcataatcatttgcgccctgatatcaagaaagatagctggactgaagaggaagagaagatattagtagaagctcatgctgaggttgggaaccgttgggcagagattgccaaacgcattccgggaagaaccgaaaatgccataaagaatcattggaatgctacaaaaaggaggcagaattcaaggagaaagaacaaacagacagatgccaaaaatggatcatcatcatcaaataagcctcctcaaccttccatacttcaaaactacataagaagtaagaatttcaataacaaagccaacaacaactcttcttccaatgctacccctaccccaagcaatatcagcaccactacccctaccagctcctccactctcacccaggaagaaccttcaaaaatccccttcaacatttttctctcggacccatcggacttatctagttgtgaacactctccattgaacattacagctgattcctacagtgatgaggaacttctcttcatgcagaacttcttcaacaacaataatgttcacaatcataatcagcagcagcagccattacccatcgacaattacaataatggccttactgcaaatccaatggatactactgattggtttgtcacttcaactccaaaaccaaacatgtacaccaacagaaacttccaagcagctgttcacaatgtagaatctcacatcgggaattctacagaagacccgcgatccattaatccccctactacccatcccagttctgatctctacctctcttacctcttaaatggaggagccagttcatcatcttcttccgcgaatcatgatcatcatatgggtaattactataacatgaacattgatttggtgattcatcaacatcaagcagcttctgcaactgaaaggagagagatggatctgattgagatggtttcttcttcgtcttcttctcagtttgctcaaggtaccaacactactagcttctattga

Protein Analysis

514

Amino Acids

57.79

Weight (kDa)

7.14

Isoelectric Point (pI)

51.44

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 1520
AccB1I GGYRCC 1 cut(s) 1520
AccB7I CCANNNNNTGG 1 cut(s) 321
AccII CGCG 2 cut(s) 1282, 1373
AciI CCGC 3 cut(s) 254, 1280, 1371
AclWI GGATC 3 cut(s) 787, 1278, 1479
AcoI YGGCCR 1 cut(s) 251
AcsI RAATTY 4 cut(s) 336, 739, 841, 1264
AcuI CTGAAG 2 cut(s) 94, 627
AfaI GTAC 2 cut(s) 1211, 1522
AfiI CCNNNNNNNGG 5 cut(s) 141, 198, 321, 352, 353
AflIII ACRYGT 1 cut(s) 1206
AjnI CCWGG 2 cut(s) 115, 939
AjuI GAANNNNNNNTTGG 6 cut(s) 1208, 1221, 1240, 1253, 1403, 1435
Alw26I GTCTC 4 cut(s) 159, 175, 193, 269
AlwI GGATC 3 cut(s) 787, 1278, 1479
AlwNI CAGNNNCTG 1 cut(s) 1448
AoxI GGCC 5 cut(s) 113, 251, 312, 323, 1144
ApeKI GCWGC 6 cut(s) 20, 1108, 1111, 1114, 1232, 1442
ApoI RAATTY 4 cut(s) 336, 739, 841, 1264
AseI ATTAAT 1 cut(s) 1290
Asp700I GAANNNNTTC 1 cut(s) 1073
Asp718I GGTACC 1 cut(s) 1520
AspLEI GCGC 1 cut(s) 579
AspS9I GGNCC 2 cut(s) 119, 982
AsuC2I CCSGG 1 cut(s) 684
AsuHPI GGTGA 6 cut(s) 29, 239, 320, 493, 928, 1435
AsuII TTCGAA 1 cut(s) 245
AsuNHI GCTAGC 1 cut(s) 275
AvaII GGWCC 2 cut(s) 119, 982
BaeGI GKGCMC 1 cut(s) 511
BanI GGYRCC 1 cut(s) 1520
BbsI GAAGAC 3 cut(s) 465, 1281, 1491
BbvCI CCTCAGC 1 cut(s) 642
BbvI GCAGC 6 cut(s) 7, 1120, 1123, 1126, 1244, 1454
BccI CCATC 7 cut(s) 8, 48, 994, 1133, 1314, 1462, 1477
BciT130I CCWGG 2 cut(s) 117, 941
BciVI GTATCC 1 cut(s) 1159
BclI TGATCA 3 cut(s) 28, 301, 1381
BcnI CCSGG 1 cut(s) 684
BcoDI GTCTC 4 cut(s) 159, 175, 193, 269
BfaI CTAG 3 cut(s) 276, 999, 1533
BfmI CTRYAG 3 cut(s) 233, 1039, 1269
BfuI GTATCC 1 cut(s) 1159
BisI GCNGC 7 cut(s) 21, 254, 1109, 1112, 1115, 1233, 1443
BlsI GCNGC 7 cut(s) 22, 255, 1110, 1113, 1116, 1234, 1444
Bme1390I CCNGG 3 cut(s) 117, 684, 941
Bme18I GGWCC 2 cut(s) 119, 982
BmgT120I GGNCC 2 cut(s) 119, 982
BmiI GGNNCC 5 cut(s) 146, 653, 984, 1351, 1522
BmrFI CCNGG 3 cut(s) 117, 684, 941
BmrI ACTGGG 1 cut(s) 1305
BmsI GCATC 2 cut(s) 103, 757
BmtI GCTAGC 1 cut(s) 279
BmuI ACTGGG 1 cut(s) 1305
BpiI GAAGAC 3 cut(s) 465, 1281, 1491
BpmI CTGGAG 1 cut(s) 312
Bpu10I CCTNAGC 1 cut(s) 642
Bpu14I TTCGAA 1 cut(s) 245
BpuEI CTTGAG 1 cut(s) 1500
BpuMI CCSGG 1 cut(s) 684
BsaBI GATNNNNATC 1 cut(s) 784
BsaI GGTCTC 1 cut(s) 159
BsaJI CCNNGG 1 cut(s) 939
BsaXI ACNNNNNCTCC 4 cut(s) 310, 340, 1177, 1207
Bsc4I CCNNNNNNNGG 5 cut(s) 141, 198, 321, 352, 353
Bse1I ACTGG 2 cut(s) 1311, 1353
Bse3DI GCAATG 2 cut(s) 228, 554
Bse8I GATNNNNATC 1 cut(s) 784
BseBI CCWGG 2 cut(s) 117, 941
BseDI CCNNGG 1 cut(s) 939
BseGI GGATG 2 cut(s) 289, 1306
BseJI GATNNNNATC 1 cut(s) 784
BseLI CCNNNNNNNGG 5 cut(s) 141, 198, 321, 352, 353
BseMI GCAATG 2 cut(s) 228, 554
BseMII CTCAG 4 cut(s) 280, 510, 633, 1520
BseNI ACTGG 2 cut(s) 1311, 1353
BseRI GAGGAG 5 cut(s) 75, 181, 792, 916, 1362
BseSI GKGCMC 1 cut(s) 511
BseXI GCAGC 6 cut(s) 7, 1120, 1123, 1126, 1244, 1454
BseYI CCCAGC 1 cut(s) 539
Bsh1236I CGCG 2 cut(s) 1282, 1373
BshFI GGCC 5 cut(s) 115, 253, 314, 325, 1146
BshNI GGYRCC 1 cut(s) 1520
BsiSI CCGG 1 cut(s) 683
BslI CCNNNNNNNGG 5 cut(s) 141, 198, 321, 352, 353
BsmAI GTCTC 4 cut(s) 159, 175, 193, 269
BsmBI CGTCTC 1 cut(s) 193
BsmI GAATGC 2 cut(s) 678, 724
BsnI GGCC 5 cut(s) 115, 253, 314, 325, 1146
Bso31I GGTCTC 1 cut(s) 159
Bsp119I TTCGAA 1 cut(s) 245
Bsp1286I GDGCHC 1 cut(s) 511
Bsp1407I TGTACA 1 cut(s) 1209
Bsp143I GATC 9 cut(s) 28, 229, 301, 367, 779, 1283, 1318, 1381, 1471
BspACI CCGC 3 cut(s) 254, 1280, 1371
BspANI GGCC 5 cut(s) 115, 253, 314, 325, 1146
BspCNI CTCAG 4 cut(s) 279, 511, 634, 1519
BspFNI CGCG 2 cut(s) 1282, 1373
BspHI TCATGA 1 cut(s) 1378
BspLI GGNNCC 5 cut(s) 146, 653, 984, 1351, 1522
BspMAI CTGCAG 1 cut(s) 237
BspOI GCTAGC 1 cut(s) 279
BspPI GGATC 3 cut(s) 787, 1278, 1479
BspT104I TTCGAA 1 cut(s) 245
BspT107I GGYRCC 1 cut(s) 1520
BspTNI GGTCTC 1 cut(s) 159
BsrDI GCAATG 2 cut(s) 228, 554
BsrGI TGTACA 1 cut(s) 1209
BsrI ACTGG 2 cut(s) 1311, 1353
BssECI CCNNGG 1 cut(s) 939
BssMI GATC 9 cut(s) 28, 229, 301, 367, 779, 1283, 1318, 1381, 1471
Bst2UI CCWGG 2 cut(s) 117, 941
Bst4CI ACNGT 3 cut(s) 444, 656, 1043
Bst6I CTCTTC 5 cut(s) 113, 603, 609, 874, 1064
BstAPI GCANNNNNTGC 2 cut(s) 668, 1448
BstAUI TGTACA 1 cut(s) 1209
BstBI TTCGAA 1 cut(s) 245
BstC8I GCNNGC 1 cut(s) 277
BstDEI CTNAG 4 cut(s) 266, 519, 642, 1506
BstF5I GGATG 2 cut(s) 289, 1306
BstFNI CGCG 2 cut(s) 1282, 1373
BstHHI GCGC 1 cut(s) 579
BstKTI GATC 9 cut(s) 31, 232, 304, 370, 782, 1286, 1321, 1384, 1474
BstMAI GTCTC 4 cut(s) 159, 175, 193, 269
BstMBI GATC 9 cut(s) 28, 229, 301, 367, 779, 1283, 1318, 1381, 1471
BstMWI GCNNNNNNNGC 5 cut(s) 515, 668, 903, 1114, 1448
BstNI CCWGG 2 cut(s) 117, 941
BstNSI RCATGY 1 cut(s) 1210
BstSCI CCNGG 3 cut(s) 115, 682, 939
BstSFI CTRYAG 3 cut(s) 233, 1039, 1269
BstSLI GKGCMC 1 cut(s) 511
BstUI CGCG 2 cut(s) 1282, 1373
BstV1I GCAGC 6 cut(s) 7, 1120, 1123, 1126, 1244, 1454
BstV2I GAAGAC 3 cut(s) 465, 1281, 1491
BstX2I RGATCY 1 cut(s) 1471
BstXI CCANNNNNNTGG 1 cut(s) 47
BstYI RGATCY 1 cut(s) 1471
BsuI GTATCC 1 cut(s) 1159
BsuRI GGCC 5 cut(s) 115, 253, 314, 325, 1146
BtsCI GGATG 2 cut(s) 289, 1306
BtsIMutI CAGTG 2 cut(s) 449, 1048
Cac8I GCNNGC 1 cut(s) 277
CaiI CAGNNNCTG 1 cut(s) 1448
CciI TCATGA 1 cut(s) 1378
CfoI GCGC 1 cut(s) 579
Cfr13I GGNCC 2 cut(s) 119, 982
Csp6I GTAC 2 cut(s) 1210, 1521
CviAII CATG 9 cut(s) 47, 305, 316, 352, 638, 1063, 1207, 1379, 1408
CviQI GTAC 2 cut(s) 1210, 1521
DdeI CTNAG 4 cut(s) 266, 519, 642, 1506
DpnI GATC 9 cut(s) 30, 231, 303, 369, 781, 1285, 1320, 1383, 1473
DpnII GATC 9 cut(s) 28, 229, 301, 367, 779, 1283, 1318, 1381, 1471
EaeI YGGCCR 1 cut(s) 251
Eam1104I CTCTTC 5 cut(s) 113, 603, 609, 874, 1064
EarI CTCTTC 5 cut(s) 113, 603, 609, 874, 1064
Eco147I AGGCCT 1 cut(s) 115
Eco31I GGTCTC 1 cut(s) 159
Eco32I GATATC 1 cut(s) 586
Eco47I GGWCC 2 cut(s) 119, 982
Eco57I CTGAAG 2 cut(s) 94, 627
EcoRI GAATTC 2 cut(s) 739, 1264
EcoRII CCWGG 2 cut(s) 115, 939
EcoRV GATATC 1 cut(s) 586
Esp3I CGTCTC 1 cut(s) 193
FaeI CATG 9 cut(s) 50, 308, 319, 355, 641, 1066, 1210, 1382, 1411
FatI CATG 9 cut(s) 46, 304, 315, 351, 637, 1062, 1206, 1378, 1407
FauI CCCGC 1 cut(s) 1287
FauNDI CATATG 1 cut(s) 1389
FbaI TGATCA 3 cut(s) 28, 301, 1381
Fnu4HI GCNGC 7 cut(s) 21, 254, 1109, 1112, 1115, 1233, 1443
FokI GGATG 2 cut(s) 296, 1293
Fsp4HI GCNGC 7 cut(s) 21, 254, 1109, 1112, 1115, 1233, 1443
FspBI CTAG 3 cut(s) 276, 999, 1533
GlaI GCGC 1 cut(s) 578
GluI GCNGC 7 cut(s) 21, 254, 1109, 1112, 1115, 1233, 1443
GsaI CCCAGC 1 cut(s) 543
GsuI CTGGAG 1 cut(s) 312
HaeIII GGCC 5 cut(s) 115, 253, 314, 325, 1146
HapII CCGG 1 cut(s) 683
HhaI GCGC 1 cut(s) 579
Hin1II CATG 9 cut(s) 50, 308, 319, 355, 641, 1066, 1210, 1382, 1411
Hin6I GCGC 1 cut(s) 577
HinP1I GCGC 1 cut(s) 577
HincII GTYRAC 1 cut(s) 129
HindII GTYRAC 1 cut(s) 129
HindIII AAGCTT 1 cut(s) 524
HinfI GANTC 6 cut(s) 183, 709, 1034, 1250, 1375, 1426
HpaII CCGG 1 cut(s) 683
HphI GGTGA 6 cut(s) 29, 239, 320, 493, 928, 1435
Hpy166II GTNNAC 6 cut(s) 129, 447, 1007, 1093, 1212, 1240
Hpy188I TCNGA 6 cut(s) 28, 269, 982, 991, 1318, 1476
Hpy188III TCNNGA 5 cut(s) 299, 329, 589, 1261, 1379
Hpy8I GTNNAC 6 cut(s) 129, 447, 1007, 1093, 1212, 1240
HpyAV CCTTC 4 cut(s) 370, 819, 960, 973
HpyCH4III ACNGT 3 cut(s) 444, 656, 1043
HpyCH4V TGCA 6 cut(s) 167, 221, 235, 1066, 1154, 1451
HpyF10VI GCNNNNNNNGC 5 cut(s) 515, 668, 903, 1114, 1448
HpyF3I CTNAG 4 cut(s) 266, 519, 642, 1506
Hsp92II CATG 9 cut(s) 50, 308, 319, 355, 641, 1066, 1210, 1382, 1411
HspAI GCGC 1 cut(s) 577
KpnI GGTACC 1 cut(s) 1524
Ksp22I TGATCA 3 cut(s) 28, 301, 1381
Kzo9I GATC 9 cut(s) 28, 229, 301, 367, 779, 1283, 1318, 1381, 1471
LmnI GCTCC 2 cut(s) 929, 1349
Lsp1109I GCAGC 6 cut(s) 7, 1120, 1123, 1126, 1244, 1454
LweI GCATC 2 cut(s) 103, 757
MaeI CTAG 3 cut(s) 276, 999, 1533
MaeIII GTNAC 1 cut(s) 1183
MalI GATC 9 cut(s) 30, 231, 303, 369, 781, 1285, 1320, 1383, 1473
MboI GATC 9 cut(s) 28, 229, 301, 367, 779, 1283, 1318, 1381, 1471
MflI RGATCY 1 cut(s) 1471
MhlI GDGCHC 1 cut(s) 511
MluCI AATT 7 cut(s) 247, 336, 739, 841, 1132, 1264, 1396
MlyI GAGTC 1 cut(s) 177
MroXI GAANNNNTTC 1 cut(s) 1073
MseI TTAA 3 cut(s) 431, 1290, 1340
MslI CAYNNNNRTG 3 cut(s) 45, 48, 717
MspA1I CMGCKG 2 cut(s) 1031, 1235
MspI CCGG 1 cut(s) 683
MspR9I CCNGG 3 cut(s) 117, 684, 941
Mva1269I GAATGC 2 cut(s) 678, 724
MvaI CCWGG 2 cut(s) 117, 941
MvnI CGCG 2 cut(s) 1282, 1373
MwoI GCNNNNNNNGC 5 cut(s) 515, 668, 903, 1114, 1448
NciI CCSGG 1 cut(s) 684
NdeI CATATG 1 cut(s) 1389
NdeII GATC 9 cut(s) 28, 229, 301, 367, 779, 1283, 1318, 1381, 1471
NheI GCTAGC 1 cut(s) 275
NlaIII CATG 9 cut(s) 50, 308, 319, 355, 641, 1066, 1210, 1382, 1411
NlaIV GGNNCC 5 cut(s) 146, 653, 984, 1351, 1522
NmeAIII GCCGAG 1 cut(s) 282
NmuCI GTSAC 1 cut(s) 1183
NspI RCATGY 1 cut(s) 1210
NspV TTCGAA 1 cut(s) 245
PagI TCATGA 1 cut(s) 1378
PceI AGGCCT 1 cut(s) 115
PciI ACATGT 1 cut(s) 1206
PctI GAATGC 2 cut(s) 678, 724
PdmI GAANNNNTTC 1 cut(s) 1073
PfeI GAWTC 5 cut(s) 709, 1034, 1250, 1375, 1426
PflMI CCANNNNNTGG 1 cut(s) 321
PfoI TCCNGGA 1 cut(s) 682
PkrI GCNGC 7 cut(s) 22, 255, 1110, 1113, 1116, 1234, 1444
PleI GAGTC 1 cut(s) 177
PpsI GAGTC 1 cut(s) 177
PscI ACATGT 1 cut(s) 1206
PshBI ATTAAT 1 cut(s) 1290
Psp6I CCWGG 2 cut(s) 115, 939
PspFI CCCAGC 1 cut(s) 539
PspGI CCWGG 2 cut(s) 115, 939
PspN4I GGNNCC 5 cut(s) 146, 653, 984, 1351, 1522
PspPI GGNCC 2 cut(s) 119, 982
PstI CTGCAG 1 cut(s) 237
PstNI CAGNNNCTG 1 cut(s) 1448
PsuI RGATCY 1 cut(s) 1471
PvuII CAGCTG 2 cut(s) 1031, 1235
RsaI GTAC 2 cut(s) 1211, 1522
RsaNI GTAC 2 cut(s) 1210, 1521
RseI CAYNNNNRTG 3 cut(s) 45, 48, 717
SaqAI TTAA 3 cut(s) 431, 1290, 1340
SatI GCNGC 7 cut(s) 21, 254, 1109, 1112, 1115, 1233, 1443
Sau3AI GATC 9 cut(s) 28, 229, 301, 367, 779, 1283, 1318, 1381, 1471
Sau96I GGNCC 2 cut(s) 119, 982
SchI GAGTC 1 cut(s) 177
ScrFI CCNGG 3 cut(s) 117, 684, 941
SduI GDGCHC 1 cut(s) 511
SfaNI GCATC 2 cut(s) 103, 757
SfcI CTRYAG 3 cut(s) 233, 1039, 1269
SfuI TTCGAA 1 cut(s) 245
SinI GGWCC 2 cut(s) 119, 982
SmiMI CAYNNNNRTG 3 cut(s) 45, 48, 717
SmlI CTYRAG 1 cut(s) 1515
SmoI CTYRAG 1 cut(s) 1515
Sse9I AATT 7 cut(s) 247, 336, 739, 841, 1132, 1264, 1396
SseBI AGGCCT 1 cut(s) 115
SsiI CCGC 3 cut(s) 254, 1280, 1371
SspMI CTAG 3 cut(s) 276, 999, 1533
StuI AGGCCT 1 cut(s) 115
StyD4I CCNGG 3 cut(s) 115, 682, 939
TaaI ACNGT 3 cut(s) 444, 656, 1043
TaqI TCGA 2 cut(s) 245, 1128
TasI AATT 7 cut(s) 247, 336, 739, 841, 1132, 1264, 1396
TatI WGTACW 1 cut(s) 1209
TauI GCSGC 1 cut(s) 256
TfiI GAWTC 5 cut(s) 709, 1034, 1250, 1375, 1426
Tru1I TTAA 3 cut(s) 431, 1290, 1340
Tru9I TTAA 3 cut(s) 431, 1290, 1340
TscAI CASTG 2 cut(s) 449, 1048
TseFI GTSAC 1 cut(s) 1183
TseI GCWGC 6 cut(s) 20, 1108, 1111, 1114, 1232, 1442
Tsp45I GTSAC 1 cut(s) 1183
TspDTI ATGAA 7 cut(s) 300, 408, 468, 1051, 1347, 1418, 1424
TspGWI ACGGA 1 cut(s) 114
TspRI CASTG 2 cut(s) 449, 1048
Van91I CCANNNNNTGG 1 cut(s) 321
VpaK11BI GGWCC 2 cut(s) 119, 982
VspI ATTAAT 1 cut(s) 1290
XapI RAATTY 4 cut(s) 336, 739, 841, 1264
XceI RCATGY 1 cut(s) 1210
XmnI GAANNNNTTC 1 cut(s) 1073
XspI CTAG 3 cut(s) 276, 999, 1533
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.