RLG00000002962
MYB Family

SANT SWI3, ADA2, N-CoR and TFIIIB'' DNA-binding domains

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr1
Physical Location & Seq
Reverse (-)
42310322 .. 42312503
2182 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000002962

Sequence Viewer

Length: 1548 bp
ATGGAAGGAGAAGATGGTGCTGCTTCTGATCATCTTCACCATCATCACGGTGTTTATGGCATTCGAAACAATCACATACAAAATCCTCATCAGCATCACAACCAACTCTTCAAGCGTGGTCCTCCGTTGACAGCCATAGACAGGTTCCTGTGGTCTCAAAACAATGCAAAGAACAAAGAGAGGCTCATCTCCTCAAATGGGTTTTCCTCATTTGGTGGGGCAATTGGTGATCTGCATGCTTGTTCGAATAGGCCGCCAAGTAGTCTCGGAGAGACTAGCTTGGATGAACTTCTTTTTCTTGATATTGGTGAGGCCATGACTTGGCCTCCAGAGAAAATTCAAAACCCTAAAATAGGGTTCAAAGAAGATCAAGTGAAGATGGGTTCTAAAGGGGTGGGAAAGAGAGCTAAAACGGGTTCATCTGTGCCTTTAATCAAAGGACAGTGGACAGATGAAGAAGACAGAAAGCTGATGAGATTGGTGAAGCAATATGGAGTGACGAAATGGGCACTGATAGCTGAGAAGCTTGTAGGTAGAGCCGGGAAGCAATGTAGAGAAAGGTGGCATAATCATTTGCGCCCTGATATCAAGAAAGATAGTTGGACTGAAGAGGAAGAGAAGATATTAGTGGAAGTTCATGCTGAGGTTGGAAACCGTTGGGCAGAGATTGCCAAACGCATTCCGGGAAGAACCGAAAATGCCATTAAGAATCATTGGAATGCTACAAAAAGGAGGCAGAATTCAAGGAGAAAGAACAAACAGACATACACCAAAAATGGACCATCATTATCAAATAAGCCTCCTCAACCTTCCATACTTCAAAACTACATAAGAAGCAAGATATTCAATAACAAAGCCAACAACAACTCTTCTTCCAATGCTCCCCCTACCCCAAGCAACATCAGCACCACTACCCCTACCAGCCCCTCCAATCTCACCCAGGAAGAACCTTCAAAAATCCCCTTCAACATTTTGCTCTCGGACCCATCGGATTTATCTAGTTGTGAACACTCTCCATTGAACATTGCAGCTGATTCCTACAATGATGAGGAACTTCTCTTCATGCAGAACTTCTTCAACAACAACAATAATGTTGACAATCATAATCATCAGCAGCAGCAGCCATTACCCATCCACGATTACAATAATGACCTTACTGCAAGTCCAATGGATACTACTGATTGGCTTGTCACTTCAACTCCAAAACCAAACATGCACACCAACAGAAACTTCCAAGCAGCTGTTAACAATATTGAATCCATCGAGAATTCTACAGAAGACCCGCAATCCATTAATCCCCCTACTACCCATCTCAGTTCTGATCTCTACCTCTCTTACCTCTTAAATGGAGGAGCCGGTTCATCATCATCTTCCGCGAATCATGATCATCATATGGGTAATTACTATAACATGAACAATGATTTGGTGACTCATCAACATCAAGCAACTTCTGCATCTGAAAGGAGTGAGATGGATCTGATTGAGATGGTTTCTTATTCGTCTTCTTCTCAGTTTGCTCAAGGTACCAACAATACTAGCTTCTATTGA

Protein Analysis

516

Amino Acids

57.89

Weight (kDa)

6.68

Isoelectric Point (pI)

55.0

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Myb_DNA-binding PF00249 146 - 192 3.3e-17 Myb-like DNA-binding domain
Myb_DNA-bind_6 PF13921 149 - 206 2.3e-19 Myb-like DNA-binding domain
Myb_DNA-binding PF00249 198 - 240 1.9e-16 Myb-like DNA-binding domain
Myb_DNA-bind_6 PF13921 201 - 245 3.3e-09 Myb-like DNA-binding domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 1523
AccB1I GGYRCC 1 cut(s) 1523
AccB7I CCANNNNNTGG 1 cut(s) 321
AccII CGCG 1 cut(s) 1376
AciI CCGC 3 cut(s) 254, 1283, 1374
AclWI GGATC 1 cut(s) 1482
AcsI RAATTY 3 cut(s) 336, 739, 1267
AcuI CTGAAG 1 cut(s) 627
AfaI GTAC 1 cut(s) 1525
AfiI CCNNNNNNNGG 4 cut(s) 141, 198, 321, 353
AjnI CCWGG 1 cut(s) 939
AjuI GAANNNNNNNTTGG 4 cut(s) 1214, 1246, 1406, 1438
AluBI AGCT 8 cut(s) 279, 407, 469, 518, 526, 1031, 1241, 1539
AluI AGCT 8 cut(s) 279, 407, 469, 518, 526, 1031, 1241, 1539
Alw26I GTCTC 3 cut(s) 159, 266, 269
AlwI GGATC 1 cut(s) 1482
AoxI GGCC 3 cut(s) 251, 312, 323
ApeKI GCWGC 6 cut(s) 20, 1028, 1114, 1117, 1120, 1238
ApoI RAATTY 3 cut(s) 336, 739, 1267
AseI ATTAAT 1 cut(s) 1293
Asp700I GAANNNNTTC 1 cut(s) 1073
Asp718I GGTACC 1 cut(s) 1523
AspLEI GCGC 1 cut(s) 579
AspS9I GGNCC 3 cut(s) 119, 779, 982
AsuC2I CCSGG 2 cut(s) 541, 684
AsuHPI GGTGA 6 cut(s) 29, 239, 320, 493, 928, 1438
AsuII TTCGAA 2 cut(s) 64, 245
AvaII GGWCC 3 cut(s) 119, 779, 982
BaeGI GKGCMC 1 cut(s) 511
BanI GGYRCC 1 cut(s) 1523
BbsI GAAGAC 3 cut(s) 465, 1284, 1494
BbvCI CCTCAGC 1 cut(s) 642
BbvI GCAGC 6 cut(s) 7, 1040, 1126, 1129, 1132, 1250
BciT130I CCWGG 1 cut(s) 941
BciVI GTATCC 1 cut(s) 1165
BclI TGATCA 2 cut(s) 28, 1384
BcnI CCSGG 2 cut(s) 541, 684
BcoDI GTCTC 3 cut(s) 159, 266, 269
BfaI CTAG 3 cut(s) 276, 999, 1536
BfmI CTRYAG 1 cut(s) 1272
BfuI GTATCC 1 cut(s) 1165
BisI GCNGC 7 cut(s) 21, 254, 1029, 1115, 1118, 1121, 1239
BlsI GCNGC 7 cut(s) 22, 255, 1030, 1116, 1119, 1122, 1240
Bme1390I CCNGG 3 cut(s) 541, 684, 941
Bme18I GGWCC 3 cut(s) 119, 779, 982
BmgT120I GGNCC 3 cut(s) 119, 779, 982
BmiI GGNNCC 4 cut(s) 146, 984, 1354, 1525
BmrFI CCNGG 3 cut(s) 541, 684, 941
BmsI GCATC 2 cut(s) 103, 1463
BpiI GAAGAC 3 cut(s) 465, 1284, 1494
BpmI CTGGAG 1 cut(s) 312
Bpu10I CCTNAGC 1 cut(s) 642
Bpu14I TTCGAA 2 cut(s) 64, 245
BpuEI CTTGAG 1 cut(s) 1503
BpuMI CCSGG 2 cut(s) 541, 684
BsaI GGTCTC 1 cut(s) 159
BsaJI CCNNGG 1 cut(s) 939
BsaXI ACNNNNNCTCC 4 cut(s) 310, 340, 1183, 1213
Bsc4I CCNNNNNNNGG 4 cut(s) 141, 198, 321, 353
Bse118I RCCGGY 1 cut(s) 1355
Bse3DI GCAATG 2 cut(s) 554, 1023
BseBI CCWGG 1 cut(s) 941
BseDI CCNNGG 1 cut(s) 939
BseGI GGATG 2 cut(s) 289, 1131
BseLI CCNNNNNNNGG 4 cut(s) 141, 198, 321, 353
BseMI GCAATG 2 cut(s) 554, 1023
BseMII CTCAG 4 cut(s) 510, 633, 1327, 1523
BseRI GAGGAG 3 cut(s) 181, 792, 1365
BseSI GKGCMC 1 cut(s) 511
BseXI GCAGC 6 cut(s) 7, 1040, 1126, 1129, 1132, 1250
Bsh1236I CGCG 1 cut(s) 1376
BshFI GGCC 3 cut(s) 253, 314, 325
BshNI GGYRCC 1 cut(s) 1523
BsiSI CCGG 3 cut(s) 540, 683, 1356
BslI CCNNNNNNNGG 4 cut(s) 141, 198, 321, 353
BsmAI GTCTC 3 cut(s) 159, 266, 269
BsmI GAATGC 3 cut(s) 60, 678, 724
BsnI GGCC 3 cut(s) 253, 314, 325
Bso31I GGTCTC 1 cut(s) 159
Bsp119I TTCGAA 2 cut(s) 64, 245
Bsp1286I GDGCHC 1 cut(s) 511
Bsp143I GATC 6 cut(s) 28, 229, 367, 1321, 1384, 1474
BspACI CCGC 3 cut(s) 254, 1283, 1374
BspANI GGCC 3 cut(s) 253, 314, 325
BspCNI CTCAG 4 cut(s) 511, 634, 1326, 1522
BspFNI CGCG 1 cut(s) 1376
BspHI TCATGA 1 cut(s) 1381
BspLI GGNNCC 4 cut(s) 146, 984, 1354, 1525
BspPI GGATC 1 cut(s) 1482
BspT104I TTCGAA 2 cut(s) 64, 245
BspT107I GGYRCC 1 cut(s) 1523
BspTNI GGTCTC 1 cut(s) 159
BsrDI GCAATG 2 cut(s) 554, 1023
BsrFI RCCGGY 1 cut(s) 1355
BssAI RCCGGY 1 cut(s) 1355
BssECI CCNNGG 1 cut(s) 939
BssMI GATC 6 cut(s) 28, 229, 367, 1321, 1384, 1474
Bst2UI CCWGG 1 cut(s) 941
Bst4CI ACNGT 3 cut(s) 50, 444, 656
Bst6I CTCTTC 5 cut(s) 113, 603, 609, 874, 1064
BstAPI GCANNNNNTGC 2 cut(s) 668, 1451
BstBI TTCGAA 2 cut(s) 64, 245
BstC8I GCNNGC 1 cut(s) 237
BstDEI CTNAG 4 cut(s) 519, 642, 1313, 1509
BstENI CCTNNNNNAGG 1 cut(s) 351
BstF5I GGATG 2 cut(s) 289, 1131
BstFNI CGCG 1 cut(s) 1376
BstHHI GCGC 1 cut(s) 579
BstKTI GATC 6 cut(s) 31, 232, 370, 1324, 1387, 1477
BstMAI GTCTC 3 cut(s) 159, 266, 269
BstMBI GATC 6 cut(s) 28, 229, 367, 1321, 1384, 1474
BstMWI GCNNNNNNNGC 5 cut(s) 515, 668, 903, 1120, 1451
BstNI CCWGG 1 cut(s) 941
BstNSI RCATGY 2 cut(s) 239, 1216
BstSCI CCNGG 3 cut(s) 539, 682, 939
BstSFI CTRYAG 1 cut(s) 1272
BstSLI GKGCMC 1 cut(s) 511
BstUI CGCG 1 cut(s) 1376
BstV1I GCAGC 6 cut(s) 7, 1040, 1126, 1129, 1132, 1250
BstV2I GAAGAC 3 cut(s) 465, 1284, 1494
BstX2I RGATCY 1 cut(s) 1474
BstYI RGATCY 1 cut(s) 1474
BsuI GTATCC 1 cut(s) 1165
BsuRI GGCC 3 cut(s) 253, 314, 325
BtsCI GGATG 2 cut(s) 289, 1131
BtsIMutI CAGTG 2 cut(s) 449, 509
Cac8I GCNNGC 1 cut(s) 237
CciI TCATGA 1 cut(s) 1381
CfoI GCGC 1 cut(s) 579
Cfr10I RCCGGY 1 cut(s) 1355
Cfr13I GGNCC 3 cut(s) 119, 779, 982
Csp6I GTAC 1 cut(s) 1524
CviAII CATG 7 cut(s) 236, 316, 638, 1063, 1213, 1382, 1411
CviQI GTAC 1 cut(s) 1524
DdeI CTNAG 4 cut(s) 519, 642, 1313, 1509
DpnI GATC 6 cut(s) 30, 231, 369, 1323, 1386, 1476
DpnII GATC 6 cut(s) 28, 229, 367, 1321, 1384, 1474
Eam1104I CTCTTC 5 cut(s) 113, 603, 609, 874, 1064
EarI CTCTTC 5 cut(s) 113, 603, 609, 874, 1064
Eco31I GGTCTC 1 cut(s) 159
Eco32I GATATC 1 cut(s) 586
Eco47I GGWCC 3 cut(s) 119, 779, 982
Eco57I CTGAAG 1 cut(s) 627
EcoNI CCTNNNNNAGG 1 cut(s) 351
EcoRI GAATTC 2 cut(s) 739, 1267
EcoRII CCWGG 1 cut(s) 939
EcoRV GATATC 1 cut(s) 586
FaeI CATG 7 cut(s) 239, 319, 641, 1066, 1216, 1385, 1414
FatI CATG 7 cut(s) 235, 315, 637, 1062, 1212, 1381, 1410
FauI CCCGC 1 cut(s) 1290
FauNDI CATATG 1 cut(s) 1392
FbaI TGATCA 2 cut(s) 28, 1384
Fnu4HI GCNGC 7 cut(s) 21, 254, 1029, 1115, 1118, 1121, 1239
FokI GGATG 2 cut(s) 296, 1118
Fsp4HI GCNGC 7 cut(s) 21, 254, 1029, 1115, 1118, 1121, 1239
FspBI CTAG 3 cut(s) 276, 999, 1536
GlaI GCGC 1 cut(s) 578
GluI GCNGC 7 cut(s) 21, 254, 1029, 1115, 1118, 1121, 1239
GsuI CTGGAG 1 cut(s) 312
HaeIII GGCC 3 cut(s) 253, 314, 325
HapII CCGG 3 cut(s) 540, 683, 1356
HhaI GCGC 1 cut(s) 579
Hin1II CATG 7 cut(s) 239, 319, 641, 1066, 1216, 1385, 1414
Hin6I GCGC 1 cut(s) 577
HinP1I GCGC 1 cut(s) 577
HincII GTYRAC 3 cut(s) 129, 1096, 1246
HindII GTYRAC 3 cut(s) 129, 1096, 1246
HindIII AAGCTT 1 cut(s) 524
HinfI GANTC 5 cut(s) 709, 1034, 1256, 1378, 1429
HpaI GTTAAC 1 cut(s) 1246
HpaII CCGG 3 cut(s) 540, 683, 1356
HphI GGTGA 6 cut(s) 29, 239, 320, 493, 928, 1438
Hpy166II GTNNAC 5 cut(s) 129, 447, 1007, 1096, 1246
Hpy188I TCNGA 7 cut(s) 28, 269, 982, 991, 1321, 1459, 1479
Hpy188III TCNNGA 5 cut(s) 299, 329, 589, 1264, 1382
Hpy8I GTNNAC 5 cut(s) 129, 447, 1007, 1096, 1246
HpyAV CCTTC 3 cut(s) 819, 960, 973
HpyCH4III ACNGT 3 cut(s) 50, 444, 656
HpyCH4V TGCA 7 cut(s) 167, 235, 1028, 1066, 1160, 1216, 1454
HpyF10VI GCNNNNNNNGC 5 cut(s) 515, 668, 903, 1120, 1451
HpyF3I CTNAG 4 cut(s) 519, 642, 1313, 1509
Hsp92II CATG 7 cut(s) 239, 319, 641, 1066, 1216, 1385, 1414
HspAI GCGC 1 cut(s) 577
KpnI GGTACC 1 cut(s) 1527
Ksp22I TGATCA 2 cut(s) 28, 1384
KspAI GTTAAC 1 cut(s) 1246
Kzo9I GATC 6 cut(s) 28, 229, 367, 1321, 1384, 1474
LmnI GCTCC 2 cut(s) 886, 1352
Lsp1109I GCAGC 6 cut(s) 7, 1040, 1126, 1129, 1132, 1250
LweI GCATC 2 cut(s) 103, 1463
MaeI CTAG 3 cut(s) 276, 999, 1536
MaeIII GTNAC 3 cut(s) 496, 1189, 1426
MalI GATC 6 cut(s) 30, 231, 369, 1323, 1386, 1476
MboI GATC 6 cut(s) 28, 229, 367, 1321, 1384, 1474
MfeI CAATTG 1 cut(s) 222
MflI RGATCY 1 cut(s) 1474
MhlI GDGCHC 1 cut(s) 511
MluCI AATT 5 cut(s) 222, 336, 739, 1267, 1399
MlyI GAGTC 1 cut(s) 1423
MmeI TCCRAC 2 cut(s) 581, 628
MroXI GAANNNNTTC 1 cut(s) 1073
MseI TTAA 5 cut(s) 431, 705, 1245, 1293, 1343
MslI CAYNNNNRTG 2 cut(s) 48, 717
MspA1I CMGCKG 2 cut(s) 1031, 1241
MspI CCGG 3 cut(s) 540, 683, 1356
MspR9I CCNGG 3 cut(s) 541, 684, 941
MunI CAATTG 1 cut(s) 222
Mva1269I GAATGC 3 cut(s) 60, 678, 724
MvaI CCWGG 1 cut(s) 941
MvnI CGCG 1 cut(s) 1376
MwoI GCNNNNNNNGC 5 cut(s) 515, 668, 903, 1120, 1451
NciI CCSGG 2 cut(s) 541, 684
NdeI CATATG 1 cut(s) 1392
NdeII GATC 6 cut(s) 28, 229, 367, 1321, 1384, 1474
NlaIII CATG 7 cut(s) 239, 319, 641, 1066, 1216, 1385, 1414
NlaIV GGNNCC 4 cut(s) 146, 984, 1354, 1525
NmuCI GTSAC 3 cut(s) 496, 1189, 1426
NspI RCATGY 2 cut(s) 239, 1216
NspV TTCGAA 2 cut(s) 64, 245
PaeI GCATGC 1 cut(s) 239
PagI TCATGA 1 cut(s) 1381
PctI GAATGC 3 cut(s) 60, 678, 724
PdmI GAANNNNTTC 1 cut(s) 1073
PfeI GAWTC 4 cut(s) 709, 1034, 1256, 1378
PflMI CCANNNNNTGG 1 cut(s) 321
PfoI TCCNGGA 1 cut(s) 682
PkrI GCNGC 7 cut(s) 22, 255, 1030, 1116, 1119, 1122, 1240
PleI GAGTC 1 cut(s) 1423
PpsI GAGTC 1 cut(s) 1423
PshBI ATTAAT 1 cut(s) 1293
Psp6I CCWGG 1 cut(s) 939
PspGI CCWGG 1 cut(s) 939
PspN4I GGNNCC 4 cut(s) 146, 984, 1354, 1525
PspPI GGNCC 3 cut(s) 119, 779, 982
PsuI RGATCY 1 cut(s) 1474
PvuII CAGCTG 2 cut(s) 1031, 1241
RsaI GTAC 1 cut(s) 1525
RsaNI GTAC 1 cut(s) 1524
RseI CAYNNNNRTG 2 cut(s) 48, 717
SaqAI TTAA 5 cut(s) 431, 705, 1245, 1293, 1343
SatI GCNGC 7 cut(s) 21, 254, 1029, 1115, 1118, 1121, 1239
Sau3AI GATC 6 cut(s) 28, 229, 367, 1321, 1384, 1474
Sau96I GGNCC 3 cut(s) 119, 779, 982
SchI GAGTC 1 cut(s) 1423
ScrFI CCNGG 3 cut(s) 541, 684, 941
SduI GDGCHC 1 cut(s) 511
SfaNI GCATC 2 cut(s) 103, 1463
SfcI CTRYAG 1 cut(s) 1272
SfuI TTCGAA 2 cut(s) 64, 245
SinI GGWCC 3 cut(s) 119, 779, 982
SmiMI CAYNNNNRTG 2 cut(s) 48, 717
SmlI CTYRAG 1 cut(s) 1518
SmoI CTYRAG 1 cut(s) 1518
SphI GCATGC 1 cut(s) 239
Sse9I AATT 5 cut(s) 222, 336, 739, 1267, 1399
SsiI CCGC 3 cut(s) 254, 1283, 1374
SspI AATATT 1 cut(s) 1252
SspMI CTAG 3 cut(s) 276, 999, 1536
StyD4I CCNGG 3 cut(s) 539, 682, 939
TaaI ACNGT 3 cut(s) 50, 444, 656
TaqI TCGA 3 cut(s) 64, 245, 1263
TasI AATT 5 cut(s) 222, 336, 739, 1267, 1399
TauI GCSGC 1 cut(s) 256
TfiI GAWTC 4 cut(s) 709, 1034, 1256, 1378
Tru1I TTAA 5 cut(s) 431, 705, 1245, 1293, 1343
Tru9I TTAA 5 cut(s) 431, 705, 1245, 1293, 1343
TscAI CASTG 2 cut(s) 449, 516
TseFI GTSAC 3 cut(s) 496, 1189, 1426
TseI GCWGC 6 cut(s) 20, 1028, 1114, 1117, 1120, 1238
Tsp45I GTSAC 3 cut(s) 496, 1189, 1426
TspDTI ATGAA 7 cut(s) 300, 408, 468, 626, 1051, 1350, 1427
TspGWI ACGGA 1 cut(s) 114
TspRI CASTG 2 cut(s) 449, 516
Van91I CCANNNNNTGG 1 cut(s) 321
VpaK11BI GGWCC 3 cut(s) 119, 779, 982
VspI ATTAAT 1 cut(s) 1293
XagI CCTNNNNNAGG 1 cut(s) 351
XapI RAATTY 3 cut(s) 336, 739, 1267
XceI RCATGY 2 cut(s) 239, 1216
XmnI GAANNNNTTC 1 cut(s) 1073
XspI CTAG 3 cut(s) 276, 999, 1536
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.