MD11G1079000.v1.1
MYB Family

SANT SWI3, ADA2, N-CoR and TFIIIB'' DNA-binding domains

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr11
Physical Location & Seq
Reverse (-)
6768278 .. 6770682
2405 bp
Loading structure...
UTR
Exon/CDS
Intron
MD11G1079000.v1.1.491

Sequence Viewer

Length: 1494 bp
ATGGAGGGAGGTAGAGGAGGAGGTGGTGGTGATGGCGATTATGGTGTTTATGGATTTACAAACAACACACAAGATCCTCCCCAGCATCACAATTTATGTAAAGCAGGTCCTCCATTGACAGCCATAGATAGGTTCTTGTGGGGAAGTCATCAAAGCCAAAACAATGCAAGCAACATAGATCATCAAAATGTGGTTTTCTCAAATGGGTTGAGTGGTTTTGCTTCTTTTGGCGGTGGTGGTGGTGCAATATTTGGCCATGAGGCAGCAGCTTCTTGGCCTAATAATTATAGTATCACTGATCATCTCCAAGAGCCAAGCTTTGTGGATGAACTTTTTCTTGAACAAGGAGAGGCCTTGATGATGAGTTGGGTTCAAGAGCAAAACCCTAATACCACAGGTGGTTTCGGAGAGGAAGGAAAAGTTTCTGAAAGAAGTTGTAAAGCGGTCGGAAAGAGATCTAAAAAAGGTTTAACTGCTGCTACTTTAATAAAGGGACAGTGGACTGCTGAAGAAGACAGGAAGTTGATCAGGCTGGTGCAGCAATGTGGAGAGAGAAAATGGGCACAGGTTGCTGAGAAGTTGGTGGGTAGGGCTGGCAAGCAGTGTAGAGAAAGATGGCACAATCATTTGCGTCCTGATATCAAGAAAGATGGCTGGACTGAAGAGGAAGAGAGGGTACTTGTTGATGCTCATGCTAAAGTTGGAAACCGTTGGGCAGAGATTGCGAAACGCATTCCTGGAAGAACCGAAAACGCCATTAAAAACCATTGGAATGCAACAAAAAGGAGGCAGACTTCAAAGAGAAAGAACAAGCAACCTGAAGGCAACAATGGAAACCACAAAAACAAGCCTCATTCTTCCATTCTCCAAAACTACATCAGAAGCAAGAATCTCATGAACAACTCCTCCAATATTTCCAATGTTTCCACTAGTACCCCTACTAGCTCTTCCACTCTCTCTCAAAATGATCCATCAAAAACCCACCTCAACACTTTGGTCACAGAGCCATCTGATCAGTCCACTACTAGCAACTGTTTTGGCTCTCCACTGAATTTGGCTGACTCTTTTTATGATGAACTTGTTTTTATGCAAAATTTCTTCACCAACAACCCTCACAATCTCAATCATCCTCAACAGCCTTCCAATTCCACTGACAACAATGTTGAACTAATTGTTAGTCCAATGGAACCCTCACAAAATCCAAACATGTACGATTTTGCTACTACCTCCACAACTAGTAGCCCCAGTCCTACTACTACCACCCCTCTGTATTCTGACCTTTACCTCTCATACCTCTTAAATGGAGCTGACAATTCATCATCTTATAATTCAAATTATCATCCTCCTCACTTAGGGTTTTACAACACAAACATGGAATATTTGGCGTCACAGGATCATCATCTTCAAGCTGCAGCTTCTTCGAACGAAAGGAGAGAGATGGATTTGGTAGAGATGGTGTCTGCTTCTCAATGTACCCAAGGAACCAGCTTCTGA

Protein Analysis

498

Amino Acids

54.97

Weight (kDa)

6.35

Isoelectric Point (pI)

50.85

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Myb_DNA-binding PF00249 164 - 210 2.2e-16 Myb-like DNA-binding domain
Myb_DNA-bind_6 PF13921 167 - 224 2.3e-19 Myb-like DNA-binding domain
Myb_DNA-binding PF00249 217 - 258 6.3e-16 Myb-like DNA-binding domain
Myb_DNA-bind_6 PF13921 219 - 266 1.3e-08 Myb-like DNA-binding domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 1326
Acc36I ACCTGC 1 cut(s) 95
AciI CCGC 2 cut(s) 231, 443
AclWI GGATC 3 cut(s) 68, 962, 1401
AcoI YGGCCR 1 cut(s) 253
AcsI RAATTY 2 cut(s) 1051, 1093
AcuI CTGAAG 3 cut(s) 528, 681, 840
AcyI GRCGYC 1 cut(s) 1385
AfaI GTAC 4 cut(s) 678, 934, 1211, 1474
AfiI CCNNNNNNNGG 2 cut(s) 129, 1352
AflIII ACRYGT 1 cut(s) 1206
AgsI TTSAA 6 cut(s) 341, 374, 798, 1166, 1332, 1406
AhlI ACTAGT 2 cut(s) 929, 1235
AjnI CCWGG 1 cut(s) 736
AloI GAACNNNNNNTCC 2 cut(s) 890, 922
AluBI AGCT 7 cut(s) 269, 318, 945, 1307, 1409, 1415, 1488
AluI AGCT 7 cut(s) 269, 318, 945, 1307, 1409, 1415, 1488
AlwI GGATC 3 cut(s) 68, 962, 1401
AlwNI CAGNNNCTG 1 cut(s) 1491
AoxI GGCC 3 cut(s) 253, 275, 351
ApeKI GCWGC 6 cut(s) 263, 266, 476, 538, 1409, 1412
ApoI RAATTY 2 cut(s) 1051, 1093
Asp700I GAANNNNTTC 2 cut(s) 333, 421
AspS9I GGNCC 1 cut(s) 107
AsuHPI GGTGA 2 cut(s) 41, 1093
AsuII TTCGAA 1 cut(s) 1421
AvaII GGWCC 1 cut(s) 107
BaeGI GKGCMC 1 cut(s) 565
BalI TGGCCA 1 cut(s) 255
BarI GAAGNNNNNNTAC 2 cut(s) 660, 692
BbsI GAAGAC 1 cut(s) 519
BbvI GCAGC 6 cut(s) 275, 278, 463, 550, 1396, 1424
BccI CCATC 7 cut(s) 26, 609, 644, 979, 1015, 1432, 1447
BcgI CGANNNNNNTGC 2 cut(s) 1401, 1435
BciT130I CCWGG 1 cut(s) 738
BclI TGATCA 3 cut(s) 298, 525, 1012
BcuI ACTAGT 2 cut(s) 929, 1235
BfaI CTAG 4 cut(s) 930, 942, 1026, 1236
BfmI CTRYAG 1 cut(s) 1410
BfuAI ACCTGC 1 cut(s) 95
BglII AGATCT 1 cut(s) 455
BisI GCNGC 6 cut(s) 264, 267, 477, 539, 1410, 1413
BlsI GCNGC 6 cut(s) 265, 268, 478, 540, 1411, 1414
Bme1390I CCNGG 1 cut(s) 738
Bme18I GGWCC 1 cut(s) 107
BmgT120I GGNCC 1 cut(s) 107
BmiI GGNNCC 2 cut(s) 1188, 1483
BmrFI CCNGG 1 cut(s) 738
BmrI ACTGGG 1 cut(s) 1239
BmsI GCATC 2 cut(s) 94, 676
BmuI ACTGGG 1 cut(s) 1239
BpiI GAAGAC 1 cut(s) 519
Bpu14I TTCGAA 1 cut(s) 1421
BsaBI GATNNNNATC 1 cut(s) 1398
BsaHI GRCGYC 1 cut(s) 1385
BsaJI CCNNGG 1 cut(s) 1477
BsaXI ACNNNNNCTCC 2 cut(s) 890, 920
Bsc4I CCNNNNNNNGG 2 cut(s) 129, 1352
Bse1I ACTGG 1 cut(s) 1245
Bse3DI GCAATG 1 cut(s) 548
Bse8I GATNNNNATC 1 cut(s) 1398
BseBI CCWGG 1 cut(s) 738
BseDI CCNNGG 1 cut(s) 1477
BseGI GGATG 3 cut(s) 331, 1126, 1339
BseJI GATNNNNATC 1 cut(s) 1398
BseLI CCNNNNNNNGG 2 cut(s) 129, 1352
BseMI GCAATG 1 cut(s) 548
BseMII CTCAG 1 cut(s) 564
BseNI ACTGG 1 cut(s) 1245
BseRI GAGGAG 4 cut(s) 30, 33, 895, 1335
BseSI GKGCMC 1 cut(s) 565
BseXI GCAGC 6 cut(s) 275, 278, 463, 550, 1396, 1424
BseYI CCCAGC 1 cut(s) 81
BsgI GTGCAG 1 cut(s) 557
Bsh1285I CGRYCG 1 cut(s) 447
BshFI GGCC 3 cut(s) 255, 277, 353
BsiEI CGRYCG 1 cut(s) 447
BslFI GGGAC 1 cut(s) 507
BslI CCNNNNNNNGG 2 cut(s) 129, 1352
BsmFI GGGAC 1 cut(s) 507
BsmI GAATGC 2 cut(s) 732, 778
BsnI GGCC 3 cut(s) 255, 277, 353
Bsp119I TTCGAA 1 cut(s) 1421
Bsp1286I GDGCHC 1 cut(s) 565
Bsp143I GATC 8 cut(s) 73, 178, 298, 455, 525, 967, 1012, 1393
BspACI CCGC 2 cut(s) 231, 443
BspANI GGCC 3 cut(s) 255, 277, 353
BspCNI CTCAG 1 cut(s) 565
BspHI TCATGA 1 cut(s) 894
BspLI GGNNCC 2 cut(s) 1188, 1483
BspMAI CTGCAG 1 cut(s) 1414
BspMI ACCTGC 1 cut(s) 95
BspPI GGATC 3 cut(s) 68, 962, 1401
BspQI GCTCTTC 1 cut(s) 952
BspT104I TTCGAA 1 cut(s) 1421
BsrDI GCAATG 1 cut(s) 548
BsrI ACTGG 1 cut(s) 1245
BssECI CCNNGG 1 cut(s) 1477
BssMI GATC 8 cut(s) 73, 178, 298, 455, 525, 967, 1012, 1393
BssNI GRCGYC 1 cut(s) 1385
BssT1I CCWWGG 1 cut(s) 1477
Bst2UI CCWGG 1 cut(s) 738
Bst4CI ACNGT 3 cut(s) 498, 710, 1034
Bst6I CTCTTC 3 cut(s) 657, 663, 952
BstACI GRCGYC 1 cut(s) 1385
BstAPI GCANNNNNTGC 2 cut(s) 569, 722
BstBI TTCGAA 1 cut(s) 1421
BstC8I GCNNGC 3 cut(s) 169, 595, 599
BstDEI CTNAG 2 cut(s) 573, 1351
BstENI CCTNNNNNAGG 1 cut(s) 1350
BstF5I GGATG 3 cut(s) 331, 1126, 1339
BstKTI GATC 8 cut(s) 76, 181, 301, 458, 528, 970, 1015, 1396
BstMBI GATC 8 cut(s) 73, 178, 298, 455, 525, 967, 1012, 1393
BstMCI CGRYCG 1 cut(s) 447
BstMWI GCNNNNNNNGC 3 cut(s) 538, 569, 722
BstNI CCWGG 1 cut(s) 738
BstNSI RCATGY 1 cut(s) 1210
BstSCI CCNGG 1 cut(s) 736
BstSFI CTRYAG 1 cut(s) 1410
BstSLI GKGCMC 1 cut(s) 565
BstV1I GCAGC 6 cut(s) 275, 278, 463, 550, 1396, 1424
BstV2I GAAGAC 1 cut(s) 519
BstX2I RGATCY 2 cut(s) 73, 455
BstYI RGATCY 2 cut(s) 73, 455
BsuRI GGCC 3 cut(s) 255, 277, 353
BtsCI GGATG 3 cut(s) 331, 1126, 1339
BtsI GCAGTG 1 cut(s) 608
BtsIMutI CAGTG 5 cut(s) 294, 503, 608, 1046, 1149
BveI ACCTGC 1 cut(s) 95
Cac8I GCNNGC 3 cut(s) 169, 595, 599
CaiI CAGNNNCTG 1 cut(s) 1491
CciI TCATGA 1 cut(s) 894
Cfr13I GGNCC 1 cut(s) 107
CseI GACGC 2 cut(s) 620, 1374
Csp6I GTAC 4 cut(s) 677, 933, 1210, 1473
CspCI CAANNNNNGTGG 4 cut(s) 303, 338, 1035, 1070
CviAII CATG 5 cut(s) 257, 692, 895, 1207, 1372
CviQI GTAC 4 cut(s) 677, 933, 1210, 1473
DdeI CTNAG 2 cut(s) 573, 1351
DpnI GATC 8 cut(s) 75, 180, 300, 457, 527, 969, 1014, 1395
DpnII GATC 8 cut(s) 73, 178, 298, 455, 525, 967, 1012, 1393
EaeI YGGCCR 1 cut(s) 253
Eam1104I CTCTTC 3 cut(s) 657, 663, 952
EarI CTCTTC 3 cut(s) 657, 663, 952
Eco130I CCWWGG 1 cut(s) 1477
Eco147I AGGCCT 1 cut(s) 353
Eco32I GATATC 1 cut(s) 640
Eco47I GGWCC 1 cut(s) 107
Eco57I CTGAAG 3 cut(s) 528, 681, 840
EcoNI CCTNNNNNAGG 1 cut(s) 1350
EcoO109I RGGNCCY 1 cut(s) 107
EcoRII CCWGG 1 cut(s) 736
EcoRV GATATC 1 cut(s) 640
EcoT14I CCWWGG 1 cut(s) 1477
ErhI CCWWGG 1 cut(s) 1477
FaeI CATG 5 cut(s) 260, 695, 898, 1210, 1375
FaqI GGGAC 1 cut(s) 507
FatI CATG 5 cut(s) 256, 691, 894, 1206, 1371
FbaI TGATCA 3 cut(s) 298, 525, 1012
Fnu4HI GCNGC 6 cut(s) 264, 267, 477, 539, 1410, 1413
FokI GGATG 3 cut(s) 338, 1113, 1326
Fsp4HI GCNGC 6 cut(s) 264, 267, 477, 539, 1410, 1413
FspBI CTAG 4 cut(s) 930, 942, 1026, 1236
GluI GCNGC 6 cut(s) 264, 267, 477, 539, 1410, 1413
GsaI CCCAGC 1 cut(s) 85
HaeIII GGCC 3 cut(s) 255, 277, 353
HgaI GACGC 2 cut(s) 620, 1374
Hin1I GRCGYC 1 cut(s) 1385
Hin1II CATG 5 cut(s) 260, 695, 898, 1210, 1375
HindIII AAGCTT 1 cut(s) 316
HinfI GANTC 2 cut(s) 889, 1061
HphI GGTGA 2 cut(s) 41, 1093
Hpy166II GTNNAC 2 cut(s) 501, 1020
Hpy188I TCNGA 7 cut(s) 407, 427, 449, 881, 1012, 1276, 1493
Hpy188III TCNNGA 5 cut(s) 338, 374, 635, 643, 895
Hpy8I GTNNAC 2 cut(s) 501, 1020
HpyAV CCTTC 3 cut(s) 407, 815, 1149
HpyCH4III ACNGT 3 cut(s) 498, 710, 1034
HpyCH4V TGCA 6 cut(s) 167, 245, 538, 776, 1090, 1412
HpyF10VI GCNNNNNNNGC 3 cut(s) 538, 569, 722
HpyF3I CTNAG 2 cut(s) 573, 1351
Hsp92I GRCGYC 1 cut(s) 1385
Hsp92II CATG 5 cut(s) 260, 695, 898, 1210, 1375
Ksp22I TGATCA 3 cut(s) 298, 525, 1012
Kzo9I GATC 8 cut(s) 73, 178, 298, 455, 525, 967, 1012, 1393
LguI GCTCTTC 1 cut(s) 952
LmnI GCTCC 1 cut(s) 1304
Lsp1109I GCAGC 6 cut(s) 275, 278, 463, 550, 1396, 1424
LweI GCATC 2 cut(s) 94, 676
MaeI CTAG 4 cut(s) 930, 942, 1026, 1236
MaeIII GTNAC 2 cut(s) 997, 1386
MalI GATC 8 cut(s) 75, 180, 300, 457, 527, 969, 1014, 1395
MboI GATC 8 cut(s) 73, 178, 298, 455, 525, 967, 1012, 1393
MflI RGATCY 2 cut(s) 73, 455
MhlI GDGCHC 1 cut(s) 565
MlsI TGGCCA 1 cut(s) 255
MluCI AATT 9 cut(s) 91, 283, 1051, 1093, 1144, 1170, 1312, 1327, 1333
MluNI TGGCCA 1 cut(s) 255
MlyI GAGTC 1 cut(s) 1055
MmeI TCCRAC 2 cut(s) 427, 682
Mox20I TGGCCA 1 cut(s) 255
MroXI GAANNNNTTC 2 cut(s) 333, 421
MscI TGGCCA 1 cut(s) 255
MseI TTAA 4 cut(s) 470, 485, 759, 1298
MslI CAYNNNNRTG 3 cut(s) 186, 771, 1370
Msp20I TGGCCA 1 cut(s) 255
MspR9I CCNGG 1 cut(s) 738
Mva1269I GAATGC 2 cut(s) 732, 778
MvaI CCWGG 1 cut(s) 738
MwoI GCNNNNNNNGC 3 cut(s) 538, 569, 722
NdeII GATC 8 cut(s) 73, 178, 298, 455, 525, 967, 1012, 1393
NlaIII CATG 5 cut(s) 260, 695, 898, 1210, 1375
NlaIV GGNNCC 2 cut(s) 1188, 1483
NmuCI GTSAC 2 cut(s) 997, 1386
NspI RCATGY 1 cut(s) 1210
NspV TTCGAA 1 cut(s) 1421
PagI TCATGA 1 cut(s) 894
PceI AGGCCT 1 cut(s) 353
PciI ACATGT 1 cut(s) 1206
PciSI GCTCTTC 1 cut(s) 952
PctI GAATGC 2 cut(s) 732, 778
PdmI GAANNNNTTC 2 cut(s) 333, 421
PfeI GAWTC 1 cut(s) 889
PfoI TCCNGGA 1 cut(s) 736
PkrI GCNGC 6 cut(s) 265, 268, 478, 540, 1411, 1414
PleI GAGTC 1 cut(s) 1055
PpsI GAGTC 1 cut(s) 1055
PpuMI RGGWCCY 1 cut(s) 107
PscI ACATGT 1 cut(s) 1206
PsiI TTATAA 1 cut(s) 1326
Psp5II RGGWCCY 1 cut(s) 107
Psp6I CCWGG 1 cut(s) 736
PspFI CCCAGC 1 cut(s) 81
PspGI CCWGG 1 cut(s) 736
PspN4I GGNNCC 2 cut(s) 1188, 1483
PspPI GGNCC 1 cut(s) 107
PspPPI RGGWCCY 1 cut(s) 107
PstI CTGCAG 1 cut(s) 1414
PstNI CAGNNNCTG 1 cut(s) 1491
PsuI RGATCY 2 cut(s) 73, 455
RsaI GTAC 4 cut(s) 678, 934, 1211, 1474
RsaNI GTAC 4 cut(s) 677, 933, 1210, 1473
RseI CAYNNNNRTG 3 cut(s) 186, 771, 1370
SapI GCTCTTC 1 cut(s) 952
SaqAI TTAA 4 cut(s) 470, 485, 759, 1298
SatI GCNGC 6 cut(s) 264, 267, 477, 539, 1410, 1413
Sau3AI GATC 8 cut(s) 73, 178, 298, 455, 525, 967, 1012, 1393
Sau96I GGNCC 1 cut(s) 107
SchI GAGTC 1 cut(s) 1055
ScrFI CCNGG 1 cut(s) 738
SduI GDGCHC 1 cut(s) 565
SfaNI GCATC 2 cut(s) 94, 676
SfcI CTRYAG 1 cut(s) 1410
SfuI TTCGAA 1 cut(s) 1421
SinI GGWCC 1 cut(s) 107
SmiMI CAYNNNNRTG 3 cut(s) 186, 771, 1370
SpeI ACTAGT 2 cut(s) 929, 1235
Sse9I AATT 9 cut(s) 91, 283, 1051, 1093, 1144, 1170, 1312, 1327, 1333
SseBI AGGCCT 1 cut(s) 353
SsiI CCGC 2 cut(s) 231, 443
SspI AATATT 3 cut(s) 249, 913, 1379
SspMI CTAG 4 cut(s) 930, 942, 1026, 1236
StuI AGGCCT 1 cut(s) 353
StyD4I CCNGG 1 cut(s) 736
StyI CCWWGG 1 cut(s) 1477
TaaI ACNGT 3 cut(s) 498, 710, 1034
TaqI TCGA 1 cut(s) 1421
TasI AATT 9 cut(s) 91, 283, 1051, 1093, 1144, 1170, 1312, 1327, 1333
TfiI GAWTC 1 cut(s) 889
Tru1I TTAA 4 cut(s) 470, 485, 759, 1298
Tru9I TTAA 4 cut(s) 470, 485, 759, 1298
TscAI CASTG 5 cut(s) 301, 503, 608, 1053, 1156
TseFI GTSAC 2 cut(s) 997, 1386
TseI GCWGC 6 cut(s) 263, 266, 476, 538, 1409, 1412
Tsp45I GTSAC 2 cut(s) 997, 1386
TspDTI ATGAA 4 cut(s) 342, 911, 1089, 1305
TspRI CASTG 5 cut(s) 301, 503, 608, 1053, 1156
VpaK11BI GGWCC 1 cut(s) 107
XagI CCTNNNNNAGG 1 cut(s) 1350
XapI RAATTY 2 cut(s) 1051, 1093
XceI RCATGY 1 cut(s) 1210
XmnI GAANNNNTTC 2 cut(s) 333, 421
XspI CTAG 4 cut(s) 930, 942, 1026, 1236
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.