RLG00000036017
MYB Family

SANT SWI3, ADA2, N-CoR and TFIIIB'' DNA-binding domains

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr7
Physical Location & Seq
Forward (+)
74967023 .. 74969211
2189 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000036017

Sequence Viewer

Length: 1548 bp
ATGGAAGGAGAAGATGGTGCGGCTTCTGATCATCTTCACCATCATCATGGTGTTTATGGGTTTCAAAACAATCACATAGAAACTCCTCATCAGCATCACAACCAACTCTTCAGGCCTGGTCCTCAGTTGACAGCCATAGACAGGTTCCTGTGGTCTCAAAACAATGCAAAGAACAAAGAGAGACTCGTCTCCTCAAATGGGTTTTCCTCATTTGGTGGTGCAATGGGTGATCTGCAGGCTTGTTCAAATTGGCCGCCGAGTAGTCTCGGAGAGGCTAGTTTGGATGAACAGCTTTTTCTTGATCATGGTGAGGCCATGACTTGGCCTCCAGAGAAAATTCAAAACCCTAACATGGGGTTCAAAGAAGATCAAGTGAAGGTAGGTTCTAAAGGGGTGGGAAAGAGAGCTAAAAAGGCTTCATCTGTGCCTCTGATCAAAGGACAGTGGACAGATGAAGAAGACAGAAAGCTGATGAGATTGGTGAAGCAATATGGAGTGAGGAAATGGGCACAGATAGCTGAGAAGCTTGTGGGTAGAGCTGGGAAGCAATGTAGAGAAAGGTGGCATAATCATTTGCGCCCTGATATCAAGAAAGACAGCTGGACTGAAGAGGAAGAGAAGATATTAGTAGAAGCTCATGCTGAGGTTGGGAACCGTTGGGCAGAGATTGCCAAACGCATTCCGGGAAGAACCGAAAATGCCATAAAGAATCATTGGAATGCTACAAAAAGGAGGCAGAATTCAAGGAGAAAGAACAAACAGACAGATGCCAAAAATGGATCATCATCATCAAATAAGCCTCCTCAACCTTCCATACTTCAAAACTACATAAGAAGCAAGAATTTCAATAACAAAGCTAGCAACAACTCTTCTTCCAATGTTACCCCTACCCCAAGCAATATCAGCACCACTACCCCTACCAGCTCCTCCACTCTCACCCAGGAAGAACCTTCAAAAATCCCCTTCAACATTTTTCTCTCGGACCCATCTGACTTATCTAGTTGTGAACACTCTCCATTGAACATTACAGCTGATTCCTACAGTGATGAGGAACTTCTCTTCATGCAGAACTTCTTCAACAACAACAATAATGTTCACAATCATAATCAGCAGCAGCAGCCATTACCCATCGACAATTACAATAATGGCCCTACTGCAAATCCAATGGATACCACTGATTGGTTTGTCACTTCAACTCCGAAACCAAACATGTACACCAACAGAAACTTCCAAGCAGCTGTTCACAATGTAGACTCTCACATCGGGAATTCTACAGAAGACCCGCGATCCATTAATGCCCCTACCACCCATCTCAGTTCTGATCTCTACCTCTCTTACCTCTTAAATGGAGGAGCCAGTTCATCATCATCTTCCGCGAATCATGATCATCATATGGGTAATTACCATAACATGAACATTGATTTGGTGACTCATCAACATCAAGCAGCTTCTGCAACTGAAAGGAGAGAGATGGATCTGATTGAGATGGTTTCTTCTTCGTCTTCTTCTCAGTTTGCTCAAGGTACCAACACTACTAGCTTCAATTGA

Protein Analysis

516

Amino Acids

57.74

Weight (kDa)

6.82

Isoelectric Point (pI)

52.42

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Myb_DNA-binding PF00249 146 - 192 6.6e-17 Myb-like DNA-binding domain
Myb_DNA-bind_6 PF13921 149 - 206 5.2e-20 Myb-like DNA-binding domain
Myb_DNA-binding PF00249 198 - 240 3.4e-17 Myb-like DNA-binding domain
Myb_DNA-bind_6 PF13921 201 - 244 6.7e-09 Myb-like DNA-binding domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 1523
AccB1I GGYRCC 1 cut(s) 1523
AccB7I CCANNNNNTGG 2 cut(s) 321, 1179
AccI GTMKAC 1 cut(s) 1251
AccII CGCG 2 cut(s) 1285, 1376
AciI CCGC 4 cut(s) 20, 254, 1283, 1374
AclWI GGATC 3 cut(s) 787, 1281, 1482
AcoI YGGCCR 1 cut(s) 251
AcsI RAATTY 4 cut(s) 336, 739, 841, 1267
AcuI CTGAAG 2 cut(s) 94, 627
AfaI GTAC 2 cut(s) 1214, 1525
AfiI CCNNNNNNNGG 6 cut(s) 141, 198, 321, 352, 353, 1179
AflIII ACRYGT 1 cut(s) 1209
AjnI CCWGG 2 cut(s) 115, 939
AjuI GAANNNNNNNTTGG 6 cut(s) 1211, 1224, 1243, 1256, 1406, 1438
Alw26I GTCTC 4 cut(s) 159, 175, 193, 269
AlwI GGATC 3 cut(s) 787, 1281, 1482
AlwNI CAGNNNCTG 1 cut(s) 1451
AoxI GGCC 5 cut(s) 113, 251, 312, 323, 1147
ApeKI GCWGC 5 cut(s) 1111, 1114, 1117, 1235, 1445
ApoI RAATTY 4 cut(s) 336, 739, 841, 1267
AseI ATTAAT 1 cut(s) 1293
Asp700I GAANNNNTTC 1 cut(s) 1073
Asp718I GGTACC 1 cut(s) 1523
AspLEI GCGC 1 cut(s) 579
AspS9I GGNCC 3 cut(s) 119, 982, 1148
AsuC2I CCSGG 1 cut(s) 684
AsuHPI GGTGA 6 cut(s) 29, 239, 320, 493, 928, 1438
AsuNHI GCTAGC 1 cut(s) 857
AvaII GGWCC 2 cut(s) 119, 982
BaeGI GKGCMC 1 cut(s) 511
BanI GGYRCC 1 cut(s) 1523
BbsI GAAGAC 3 cut(s) 465, 1284, 1494
BbvCI CCTCAGC 1 cut(s) 642
BbvI GCAGC 5 cut(s) 1123, 1126, 1129, 1247, 1457
BccI CCATC 7 cut(s) 8, 48, 994, 1136, 1317, 1465, 1480
BciT130I CCWGG 2 cut(s) 117, 941
BciVI GTATCC 1 cut(s) 1162
BclI TGATCA 4 cut(s) 28, 301, 432, 1384
BcnI CCSGG 1 cut(s) 684
BcoDI GTCTC 4 cut(s) 159, 175, 193, 269
BfaI CTAG 4 cut(s) 276, 858, 999, 1536
BfmI CTRYAG 3 cut(s) 233, 1039, 1272
BfuI GTATCC 1 cut(s) 1162
BisI GCNGC 7 cut(s) 21, 254, 1112, 1115, 1118, 1236, 1446
BlsI GCNGC 7 cut(s) 22, 255, 1113, 1116, 1119, 1237, 1447
Bme1390I CCNGG 3 cut(s) 117, 684, 941
Bme18I GGWCC 2 cut(s) 119, 982
BmgT120I GGNCC 3 cut(s) 119, 982, 1148
BmiI GGNNCC 5 cut(s) 146, 653, 984, 1354, 1525
BmrFI CCNGG 3 cut(s) 117, 684, 941
BmsI GCATC 2 cut(s) 103, 757
BmtI GCTAGC 1 cut(s) 861
BpiI GAAGAC 3 cut(s) 465, 1284, 1494
BpmI CTGGAG 1 cut(s) 312
Bpu10I CCTNAGC 1 cut(s) 642
BpuEI CTTGAG 1 cut(s) 1503
BpuMI CCSGG 1 cut(s) 684
BsaBI GATNNNNATC 1 cut(s) 784
BsaI GGTCTC 1 cut(s) 159
BsaJI CCNNGG 1 cut(s) 939
BsaXI ACNNNNNCTCC 4 cut(s) 310, 340, 1180, 1210
Bsc4I CCNNNNNNNGG 6 cut(s) 141, 198, 321, 352, 353, 1179
Bse1I ACTGG 1 cut(s) 1356
Bse3DI GCAATG 2 cut(s) 228, 554
Bse8I GATNNNNATC 1 cut(s) 784
BseBI CCWGG 2 cut(s) 117, 941
BseDI CCNNGG 1 cut(s) 939
BseGI GGATG 1 cut(s) 289
BseJI GATNNNNATC 1 cut(s) 784
BseLI CCNNNNNNNGG 6 cut(s) 141, 198, 321, 352, 353, 1179
BseMI GCAATG 2 cut(s) 228, 554
BseMII CTCAG 5 cut(s) 137, 510, 633, 1327, 1523
BseNI ACTGG 1 cut(s) 1356
BseRI GAGGAG 5 cut(s) 75, 181, 792, 916, 1365
BseSI GKGCMC 1 cut(s) 511
BseXI GCAGC 5 cut(s) 1123, 1126, 1129, 1247, 1457
BseYI CCCAGC 1 cut(s) 539
Bsh1236I CGCG 2 cut(s) 1285, 1376
BshFI GGCC 5 cut(s) 115, 253, 314, 325, 1149
BshNI GGYRCC 1 cut(s) 1523
BsiSI CCGG 1 cut(s) 683
BslI CCNNNNNNNGG 6 cut(s) 141, 198, 321, 352, 353, 1179
BsmAI GTCTC 4 cut(s) 159, 175, 193, 269
BsmBI CGTCTC 1 cut(s) 193
BsmI GAATGC 2 cut(s) 678, 724
BsnI GGCC 5 cut(s) 115, 253, 314, 325, 1149
Bso31I GGTCTC 1 cut(s) 159
Bsp1286I GDGCHC 1 cut(s) 511
Bsp1407I TGTACA 1 cut(s) 1212
BspACI CCGC 4 cut(s) 20, 254, 1283, 1374
BspANI GGCC 5 cut(s) 115, 253, 314, 325, 1149
BspCNI CTCAG 5 cut(s) 136, 511, 634, 1326, 1522
BspFNI CGCG 2 cut(s) 1285, 1376
BspHI TCATGA 1 cut(s) 1381
BspLI GGNNCC 5 cut(s) 146, 653, 984, 1354, 1525
BspMAI CTGCAG 1 cut(s) 237
BspOI GCTAGC 1 cut(s) 861
BspPI GGATC 3 cut(s) 787, 1281, 1482
BspT107I GGYRCC 1 cut(s) 1523
BspTNI GGTCTC 1 cut(s) 159
BsrDI GCAATG 2 cut(s) 228, 554
BsrGI TGTACA 1 cut(s) 1212
BsrI ACTGG 1 cut(s) 1356
BssECI CCNNGG 1 cut(s) 939
Bst2UI CCWGG 2 cut(s) 117, 941
Bst4CI ACNGT 3 cut(s) 444, 656, 1043
Bst6I CTCTTC 5 cut(s) 113, 603, 609, 874, 1064
BstAPI GCANNNNNTGC 2 cut(s) 668, 1451
BstAUI TGTACA 1 cut(s) 1212
BstC8I GCNNGC 2 cut(s) 237, 859
BstDEI CTNAG 5 cut(s) 123, 519, 642, 1313, 1509
BstF5I GGATG 1 cut(s) 289
BstFNI CGCG 2 cut(s) 1285, 1376
BstHHI GCGC 1 cut(s) 579
BstMAI GTCTC 4 cut(s) 159, 175, 193, 269
BstMWI GCNNNNNNNGC 6 cut(s) 413, 515, 668, 903, 1117, 1451
BstNI CCWGG 2 cut(s) 117, 941
BstNSI RCATGY 1 cut(s) 1213
BstSCI CCNGG 3 cut(s) 115, 682, 939
BstSFI CTRYAG 3 cut(s) 233, 1039, 1272
BstSLI GKGCMC 1 cut(s) 511
BstUI CGCG 2 cut(s) 1285, 1376
BstV1I GCAGC 5 cut(s) 1123, 1126, 1129, 1247, 1457
BstV2I GAAGAC 3 cut(s) 465, 1284, 1494
BstX2I RGATCY 1 cut(s) 1474
BstXI CCANNNNNNTGG 1 cut(s) 47
BstYI RGATCY 1 cut(s) 1474
BsuI GTATCC 1 cut(s) 1162
BsuRI GGCC 5 cut(s) 115, 253, 314, 325, 1149
BtsCI GGATG 1 cut(s) 289
BtsIMutI CAGTG 3 cut(s) 449, 1048, 1173
Cac8I GCNNGC 2 cut(s) 237, 859
CaiI CAGNNNCTG 1 cut(s) 1451
CciI TCATGA 1 cut(s) 1381
CfoI GCGC 1 cut(s) 579
Cfr13I GGNCC 3 cut(s) 119, 982, 1148
Csp6I GTAC 2 cut(s) 1213, 1524
CviAII CATG 9 cut(s) 47, 305, 316, 352, 638, 1063, 1210, 1382, 1411
CviQI GTAC 2 cut(s) 1213, 1524
DdeI CTNAG 5 cut(s) 123, 519, 642, 1313, 1509
EaeI YGGCCR 1 cut(s) 251
Eam1104I CTCTTC 5 cut(s) 113, 603, 609, 874, 1064
EarI CTCTTC 5 cut(s) 113, 603, 609, 874, 1064
Eco147I AGGCCT 1 cut(s) 115
Eco31I GGTCTC 1 cut(s) 159
Eco32I GATATC 1 cut(s) 586
Eco47I GGWCC 2 cut(s) 119, 982
Eco57I CTGAAG 2 cut(s) 94, 627
EcoRI GAATTC 2 cut(s) 739, 1267
EcoRII CCWGG 2 cut(s) 115, 939
EcoRV GATATC 1 cut(s) 586
Esp3I CGTCTC 1 cut(s) 193
FaeI CATG 9 cut(s) 50, 308, 319, 355, 641, 1066, 1213, 1385, 1414
FatI CATG 9 cut(s) 46, 304, 315, 351, 637, 1062, 1209, 1381, 1410
FauI CCCGC 1 cut(s) 1290
FauNDI CATATG 1 cut(s) 1392
FbaI TGATCA 4 cut(s) 28, 301, 432, 1384
FblI GTMKAC 1 cut(s) 1251
Fnu4HI GCNGC 7 cut(s) 21, 254, 1112, 1115, 1118, 1236, 1446
FokI GGATG 1 cut(s) 296
Fsp4HI GCNGC 7 cut(s) 21, 254, 1112, 1115, 1118, 1236, 1446
FspBI CTAG 4 cut(s) 276, 858, 999, 1536
GlaI GCGC 1 cut(s) 578
GluI GCNGC 7 cut(s) 21, 254, 1112, 1115, 1118, 1236, 1446
GsaI CCCAGC 1 cut(s) 543
GsuI CTGGAG 1 cut(s) 312
HaeIII GGCC 5 cut(s) 115, 253, 314, 325, 1149
HapII CCGG 1 cut(s) 683
HhaI GCGC 1 cut(s) 579
Hin1II CATG 9 cut(s) 50, 308, 319, 355, 641, 1066, 1213, 1385, 1414
Hin6I GCGC 1 cut(s) 577
HinP1I GCGC 1 cut(s) 577
HincII GTYRAC 1 cut(s) 129
HindII GTYRAC 1 cut(s) 129
HindIII AAGCTT 1 cut(s) 524
HinfI GANTC 6 cut(s) 183, 709, 1034, 1253, 1378, 1429
HpaII CCGG 1 cut(s) 683
HphI GGTGA 6 cut(s) 29, 239, 320, 493, 928, 1438
Hpy166II GTNNAC 7 cut(s) 129, 447, 1007, 1096, 1215, 1243, 1252
Hpy188I TCNGA 8 cut(s) 28, 269, 432, 982, 991, 1200, 1321, 1479
Hpy188III TCNNGA 5 cut(s) 299, 329, 589, 1264, 1382
Hpy8I GTNNAC 7 cut(s) 129, 447, 1007, 1096, 1215, 1243, 1252
HpyAV CCTTC 4 cut(s) 370, 819, 960, 973
HpyCH4III ACNGT 3 cut(s) 444, 656, 1043
HpyCH4V TGCA 6 cut(s) 167, 221, 235, 1066, 1157, 1454
HpyF10VI GCNNNNNNNGC 6 cut(s) 413, 515, 668, 903, 1117, 1451
HpyF3I CTNAG 5 cut(s) 123, 519, 642, 1313, 1509
Hsp92II CATG 9 cut(s) 50, 308, 319, 355, 641, 1066, 1213, 1385, 1414
HspAI GCGC 1 cut(s) 577
KpnI GGTACC 1 cut(s) 1527
Ksp22I TGATCA 4 cut(s) 28, 301, 432, 1384
LmnI GCTCC 2 cut(s) 929, 1352
Lsp1109I GCAGC 5 cut(s) 1123, 1126, 1129, 1247, 1457
LweI GCATC 2 cut(s) 103, 757
MaeI CTAG 4 cut(s) 276, 858, 999, 1536
MaeIII GTNAC 3 cut(s) 880, 1186, 1426
MfeI CAATTG 1 cut(s) 1543
MflI RGATCY 1 cut(s) 1474
MhlI GDGCHC 1 cut(s) 511
MluCI AATT 8 cut(s) 247, 336, 739, 841, 1135, 1267, 1399, 1543
MlyI GAGTC 3 cut(s) 177, 1247, 1423
MroXI GAANNNNTTC 1 cut(s) 1073
MseI TTAA 2 cut(s) 1293, 1343
MslI CAYNNNNRTG 3 cut(s) 45, 48, 717
MspA1I CMGCKG 3 cut(s) 600, 1031, 1238
MspI CCGG 1 cut(s) 683
MspR9I CCNGG 3 cut(s) 117, 684, 941
MunI CAATTG 1 cut(s) 1543
Mva1269I GAATGC 2 cut(s) 678, 724
MvaI CCWGG 2 cut(s) 117, 941
MvnI CGCG 2 cut(s) 1285, 1376
MwoI GCNNNNNNNGC 6 cut(s) 413, 515, 668, 903, 1117, 1451
NciI CCSGG 1 cut(s) 684
NdeI CATATG 1 cut(s) 1392
NheI GCTAGC 1 cut(s) 857
NlaIII CATG 9 cut(s) 50, 308, 319, 355, 641, 1066, 1213, 1385, 1414
NlaIV GGNNCC 5 cut(s) 146, 653, 984, 1354, 1525
NmeAIII GCCGAG 1 cut(s) 282
NmuCI GTSAC 2 cut(s) 1186, 1426
NspI RCATGY 1 cut(s) 1213
PagI TCATGA 1 cut(s) 1381
PceI AGGCCT 1 cut(s) 115
PciI ACATGT 1 cut(s) 1209
PctI GAATGC 2 cut(s) 678, 724
PdmI GAANNNNTTC 1 cut(s) 1073
PfeI GAWTC 3 cut(s) 709, 1034, 1378
PflMI CCANNNNNTGG 2 cut(s) 321, 1179
PfoI TCCNGGA 1 cut(s) 682
PkrI GCNGC 7 cut(s) 22, 255, 1113, 1116, 1119, 1237, 1447
PleI GAGTC 3 cut(s) 177, 1247, 1423
PpsI GAGTC 3 cut(s) 177, 1247, 1423
PscI ACATGT 1 cut(s) 1209
PshBI ATTAAT 1 cut(s) 1293
Psp6I CCWGG 2 cut(s) 115, 939
PspFI CCCAGC 1 cut(s) 539
PspGI CCWGG 2 cut(s) 115, 939
PspN4I GGNNCC 5 cut(s) 146, 653, 984, 1354, 1525
PspPI GGNCC 3 cut(s) 119, 982, 1148
PstI CTGCAG 1 cut(s) 237
PstNI CAGNNNCTG 1 cut(s) 1451
PsuI RGATCY 1 cut(s) 1474
PvuII CAGCTG 3 cut(s) 600, 1031, 1238
RsaI GTAC 2 cut(s) 1214, 1525
RsaNI GTAC 2 cut(s) 1213, 1524
RseI CAYNNNNRTG 3 cut(s) 45, 48, 717
SaqAI TTAA 2 cut(s) 1293, 1343
SatI GCNGC 7 cut(s) 21, 254, 1112, 1115, 1118, 1236, 1446
Sau96I GGNCC 3 cut(s) 119, 982, 1148
SchI GAGTC 3 cut(s) 177, 1247, 1423
ScrFI CCNGG 3 cut(s) 117, 684, 941
SduI GDGCHC 1 cut(s) 511
SfaNI GCATC 2 cut(s) 103, 757
SfcI CTRYAG 3 cut(s) 233, 1039, 1272
SinI GGWCC 2 cut(s) 119, 982
SmiMI CAYNNNNRTG 3 cut(s) 45, 48, 717
SmlI CTYRAG 1 cut(s) 1518
SmoI CTYRAG 1 cut(s) 1518
Sse9I AATT 8 cut(s) 247, 336, 739, 841, 1135, 1267, 1399, 1543
SseBI AGGCCT 1 cut(s) 115
SsiI CCGC 4 cut(s) 20, 254, 1283, 1374
SspMI CTAG 4 cut(s) 276, 858, 999, 1536
StuI AGGCCT 1 cut(s) 115
StyD4I CCNGG 3 cut(s) 115, 682, 939
TaaI ACNGT 3 cut(s) 444, 656, 1043
TaqI TCGA 1 cut(s) 1131
TasI AATT 8 cut(s) 247, 336, 739, 841, 1135, 1267, 1399, 1543
TatI WGTACW 1 cut(s) 1212
TauI GCSGC 2 cut(s) 23, 256
TfiI GAWTC 3 cut(s) 709, 1034, 1378
Tru1I TTAA 2 cut(s) 1293, 1343
Tru9I TTAA 2 cut(s) 1293, 1343
TscAI CASTG 3 cut(s) 449, 1048, 1180
TseFI GTSAC 2 cut(s) 1186, 1426
TseI GCWGC 5 cut(s) 1111, 1114, 1117, 1235, 1445
Tsp45I GTSAC 2 cut(s) 1186, 1426
TspDTI ATGAA 6 cut(s) 300, 408, 468, 1051, 1350, 1427
TspRI CASTG 3 cut(s) 449, 1048, 1180
Van91I CCANNNNNTGG 2 cut(s) 321, 1179
VpaK11BI GGWCC 2 cut(s) 119, 982
VspI ATTAAT 1 cut(s) 1293
XapI RAATTY 4 cut(s) 336, 739, 841, 1267
XceI RCATGY 1 cut(s) 1213
XmiI GTMKAC 1 cut(s) 1251
XmnI GAANNNNTTC 1 cut(s) 1073
XspI CTAG 4 cut(s) 276, 858, 999, 1536
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.