Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_ssc0000378.1

Orthogroup ID

OG0004958

Physical Location & Seq

Genomic Coordinates Forward (+)

5575 .. 6280

Gene Structure 706 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_ssc0000378.1_g000003.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 603 bp

atggaaggagaagatggtgctgcttctgatcatcttcaccatcatcatggtgtttatgggtttcaaaacaatcacatacaaactcctcatcagcatcacaaccaactcttcaggcctggtcctccgttgacagccatagacaggttcctgtggtctcaaaacaatgcaaagaacaaagacagactcgtctcctcaaatgggttttcctcatttggtggtgcaatgggtgatctgcagacttgttcgaattggccgccgagtagtctcagagaggctagcttggatgaactgctttttcttgatcatggtgaggccatgacttggcctccagagaaaattcaaaaccctaacatggggttcaaagaagatcaagtgaaggtgggttctaaaggggtgggaaagaaagctaaaaagggttcatctgtgcctttaatcaaaggacagtggacagatgaagaagacagaaagctgatgagattggtgaagcaatatggagtgaggaaatgggcacagatagctgagaagcttgtgggtagagctgggaagcaatgtagagaaaggtggcataatcatttgcgccctgatatcaaggtttgttcttaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000981 GO:0000988 GO:0000989 GO:0001067 GO:0001076 GO:0001134 GO:0001135 GO:0003006 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0006357 GO:0006935 GO:0007275 GO:0008150 GO:0009553 GO:0009605 GO:0009856 GO:0009889 GO:0010183 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0022414 GO:0031323 GO:0031326 GO:0032501 GO:0032502 GO:0040011 GO:0042221 GO:0042330 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0044212 GO:0044424 GO:0044464 GO:0044706 GO:0045595 GO:0045691 GO:0045697 GO:0048229 GO:0048856 GO:0048868 GO:0050789 GO:0050793 GO:0050794 GO:0050896 GO:0050918 GO:0051171 GO:0051239 GO:0051252 GO:0051704 GO:0060255 GO:0065007 GO:0080090 GO:0097159 GO:0140110 GO:1901363 GO:1903506 GO:2000026 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Myb_DNA-binding

Protein Analysis

200

Amino Acids

22.62

Weight (kDa)

9.28

Isoelectric Point (pI)

25.93

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004958)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G11050 AT5G58850
fragaria_vesca	FvH4_3g38310 FvH4_3g38320
malus_domestica	MD03G1073100.v1.1 MD11G1079000.v1.1
prunus_persica	Prupe.6G059700_v2.0.a1
pyrus_communis	pycom03g05910
rosa_chinensis	RchiOBHm_Chr5g0068891 RchiOBHm_Chr7g0211831
rosa_laevigata	RLG00000002962 RLG00000036017
rosa_multiflora	Rmu_sc0009005.1_g000013 Rmu_sc0013825.1_g000001 Rmu_sc0016160.1_g000005 Rmu_ssc0000378.1_g000003
rosa_roxburghii	Rroxscaffold_1G00011840 Rroxscaffold_3G00247400
rosa_rugosa	Rorug05G0394200 Rorug07G0129000
rosa_samantha	Rh5AG451300 Rh5BG470000 Rh5CG492500 Rh5DG483100 Rh7AG261700 Rh7BG255300 Rh7CG278300 Rh7DG268300
rosa_wichuraiana	Rw5G042150 Rw7G022320

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	185
AccB7I	CCANNNNNTGG	1 cut(s)	321
AciI	CCGC	1 cut(s)	254
AcoI	YGGCCR	1 cut(s)	251
AcsI	RAATTY	1 cut(s)	336
AcuI	CTGAAG	1 cut(s)	94
AfiI	CCNNNNNNNGG	5 cut(s)	141, 198, 321, 352, 353
AgsI	TTSAA	3 cut(s)	65, 341, 361
AjnI	CCWGG	1 cut(s)	115
AluBI	AGCT	6 cut(s)	279, 407, 469, 518, 526, 539
AluI	AGCT	6 cut(s)	279, 407, 469, 518, 526, 539
Alw26I	GTCTC	3 cut(s)	159, 193, 269
AoxI	GGCC	4 cut(s)	113, 251, 312, 323
ApeKI	GCWGC	1 cut(s)	20
ApoI	RAATTY	1 cut(s)	336
AspLEI	GCGC	1 cut(s)	579
AspS9I	GGNCC	1 cut(s)	119
AsuHPI	GGTGA	4 cut(s)	29, 239, 320, 493
AsuII	TTCGAA	1 cut(s)	245
AsuNHI	GCTAGC	1 cut(s)	275
AvaII	GGWCC	1 cut(s)	119
BaeGI	GKGCMC	1 cut(s)	511
BbsI	GAAGAC	1 cut(s)	465
BbvI	GCAGC	1 cut(s)	7
BccI	CCATC	2 cut(s)	8, 48
BciT130I	CCWGG	1 cut(s)	117
BclI	TGATCA	2 cut(s)	28, 301
BcoDI	GTCTC	3 cut(s)	159, 193, 269
BfaI	CTAG	1 cut(s)	276
BfmI	CTRYAG	1 cut(s)	233
BisI	GCNGC	2 cut(s)	21, 254
BlsI	GCNGC	2 cut(s)	22, 255
Bme1390I	CCNGG	1 cut(s)	117
Bme18I	GGWCC	1 cut(s)	119
BmgT120I	GGNCC	1 cut(s)	119
BmiI	GGNNCC	1 cut(s)	146
BmrFI	CCNGG	1 cut(s)	117
BmsI	GCATC	1 cut(s)	103
BmtI	GCTAGC	1 cut(s)	279
BpiI	GAAGAC	1 cut(s)	465
BpmI	CTGGAG	1 cut(s)	312
Bpu14I	TTCGAA	1 cut(s)	245
BsaI	GGTCTC	1 cut(s)	159
BsaXI	ACNNNNNCTCC	2 cut(s)	310, 340
Bsc4I	CCNNNNNNNGG	5 cut(s)	141, 198, 321, 352, 353
Bse3DI	GCAATG	2 cut(s)	228, 554
BseBI	CCWGG	1 cut(s)	117
BseGI	GGATG	1 cut(s)	289
BseLI	CCNNNNNNNGG	5 cut(s)	141, 198, 321, 352, 353
BseMI	GCAATG	2 cut(s)	228, 554
BseMII	CTCAG	2 cut(s)	280, 510
BseRI	GAGGAG	2 cut(s)	75, 181
BseSI	GKGCMC	1 cut(s)	511
BseXI	GCAGC	1 cut(s)	7
BseYI	CCCAGC	1 cut(s)	539
BshFI	GGCC	4 cut(s)	115, 253, 314, 325
BslI	CCNNNNNNNGG	5 cut(s)	141, 198, 321, 352, 353
BsmAI	GTCTC	3 cut(s)	159, 193, 269
BsmBI	CGTCTC	1 cut(s)	193
BsnI	GGCC	4 cut(s)	115, 253, 314, 325
Bso31I	GGTCTC	1 cut(s)	159
Bsp119I	TTCGAA	1 cut(s)	245
Bsp1286I	GDGCHC	1 cut(s)	511
Bsp143I	GATC	4 cut(s)	28, 229, 301, 367
BspACI	CCGC	1 cut(s)	254
BspANI	GGCC	4 cut(s)	115, 253, 314, 325
BspCNI	CTCAG	2 cut(s)	279, 511
BspLI	GGNNCC	1 cut(s)	146
BspMAI	CTGCAG	1 cut(s)	237
BspOI	GCTAGC	1 cut(s)	279
BspT104I	TTCGAA	1 cut(s)	245
BspTNI	GGTCTC	1 cut(s)	159
BsrDI	GCAATG	2 cut(s)	228, 554
BssMI	GATC	4 cut(s)	28, 229, 301, 367
Bst2UI	CCWGG	1 cut(s)	117
Bst4CI	ACNGT	1 cut(s)	444
Bst6I	CTCTTC	1 cut(s)	113
BstBI	TTCGAA	1 cut(s)	245
BstC8I	GCNNGC	1 cut(s)	277
BstDEI	CTNAG	2 cut(s)	266, 519
BstF5I	GGATG	1 cut(s)	289
BstHHI	GCGC	1 cut(s)	579
BstKTI	GATC	4 cut(s)	31, 232, 304, 370
BstMAI	GTCTC	3 cut(s)	159, 193, 269
BstMBI	GATC	4 cut(s)	28, 229, 301, 367
BstMWI	GCNNNNNNNGC	1 cut(s)	515
BstNI	CCWGG	1 cut(s)	117
BstSCI	CCNGG	1 cut(s)	115
BstSFI	CTRYAG	1 cut(s)	233
BstSLI	GKGCMC	1 cut(s)	511
BstV1I	GCAGC	1 cut(s)	7
BstV2I	GAAGAC	1 cut(s)	465
BstXI	CCANNNNNNTGG	1 cut(s)	47
BsuRI	GGCC	4 cut(s)	115, 253, 314, 325
BtsCI	GGATG	1 cut(s)	289
BtsIMutI	CAGTG	1 cut(s)	449
Cac8I	GCNNGC	1 cut(s)	277
CfoI	GCGC	1 cut(s)	579
Cfr13I	GGNCC	1 cut(s)	119
CviAII	CATG	4 cut(s)	47, 305, 316, 352
DdeI	CTNAG	2 cut(s)	266, 519
DpnI	GATC	4 cut(s)	30, 231, 303, 369
DpnII	GATC	4 cut(s)	28, 229, 301, 367
DrdI	GACNNNNNNGTC	1 cut(s)	185
DseDI	GACNNNNNNGTC	1 cut(s)	185
EaeI	YGGCCR	1 cut(s)	251
Eam1104I	CTCTTC	1 cut(s)	113
EarI	CTCTTC	1 cut(s)	113
Eco147I	AGGCCT	1 cut(s)	115
Eco31I	GGTCTC	1 cut(s)	159
Eco32I	GATATC	1 cut(s)	586
Eco47I	GGWCC	1 cut(s)	119
Eco57I	CTGAAG	1 cut(s)	94
EcoRII	CCWGG	1 cut(s)	115
EcoRV	GATATC	1 cut(s)	586
Esp3I	CGTCTC	1 cut(s)	193
FaeI	CATG	4 cut(s)	50, 308, 319, 355
FaiI	YATR	9 cut(s)	48, 57, 77, 137, 306, 317, 353, 492, 567
FatI	CATG	4 cut(s)	46, 304, 315, 351
FbaI	TGATCA	2 cut(s)	28, 301
Fnu4HI	GCNGC	2 cut(s)	21, 254
FokI	GGATG	1 cut(s)	296
Fsp4HI	GCNGC	2 cut(s)	21, 254
FspBI	CTAG	1 cut(s)	276
GlaI	GCGC	1 cut(s)	578
GluI	GCNGC	2 cut(s)	21, 254
GsaI	CCCAGC	1 cut(s)	543
GsuI	CTGGAG	1 cut(s)	312
HaeIII	GGCC	4 cut(s)	115, 253, 314, 325
HhaI	GCGC	1 cut(s)	579
Hin1II	CATG	4 cut(s)	50, 308, 319, 355
Hin6I	GCGC	1 cut(s)	577
HinP1I	GCGC	1 cut(s)	577
HincII	GTYRAC	1 cut(s)	129
HindII	GTYRAC	1 cut(s)	129
HindIII	AAGCTT	1 cut(s)	524
HinfI	GANTC	1 cut(s)	183
HphI	GGTGA	4 cut(s)	29, 239, 320, 493
Hpy166II	GTNNAC	2 cut(s)	129, 447
Hpy188I	TCNGA	2 cut(s)	28, 269
Hpy188III	TCNNGA	2 cut(s)	299, 329
Hpy8I	GTNNAC	2 cut(s)	129, 447
HpyAV	CCTTC	1 cut(s)	370
HpyCH4III	ACNGT	1 cut(s)	444
HpyCH4V	TGCA	3 cut(s)	167, 221, 235
HpyF10VI	GCNNNNNNNGC	1 cut(s)	515
HpyF3I	CTNAG	2 cut(s)	266, 519
Hsp92II	CATG	4 cut(s)	50, 308, 319, 355
HspAI	GCGC	1 cut(s)	577
Ksp22I	TGATCA	2 cut(s)	28, 301
Kzo9I	GATC	4 cut(s)	28, 229, 301, 367
LpnPI	CCDG	8 cut(s)	97, 102, 127, 129, 161, 342, 525, 594
Lsp1109I	GCAGC	1 cut(s)	7
LweI	GCATC	1 cut(s)	103
MaeI	CTAG	1 cut(s)	276
MalI	GATC	4 cut(s)	30, 231, 303, 369
MboI	GATC	4 cut(s)	28, 229, 301, 367
MboII	GAAGA	6 cut(s)	23, 26, 100, 377, 467, 470
MhlI	GDGCHC	1 cut(s)	511
MluCI	AATT	2 cut(s)	247, 336
MlyI	GAGTC	1 cut(s)	177
MnlI	CCTC	8 cut(s)	96, 132, 202, 217, 265, 304, 336, 492
MseI	TTAA	2 cut(s)	431, 601
MslI	CAYNNNNRTG	2 cut(s)	45, 48
MspR9I	CCNGG	1 cut(s)	117
MvaI	CCWGG	1 cut(s)	117
MwoI	GCNNNNNNNGC	1 cut(s)	515
NdeII	GATC	4 cut(s)	28, 229, 301, 367
NheI	GCTAGC	1 cut(s)	275
NlaIII	CATG	4 cut(s)	50, 308, 319, 355
NlaIV	GGNNCC	1 cut(s)	146
NmeAIII	GCCGAG	1 cut(s)	282
NspV	TTCGAA	1 cut(s)	245
PceI	AGGCCT	1 cut(s)	115
PflMI	CCANNNNNTGG	1 cut(s)	321
PkrI	GCNGC	2 cut(s)	22, 255
PleI	GAGTC	1 cut(s)	177
PpsI	GAGTC	1 cut(s)	177
Psp6I	CCWGG	1 cut(s)	115
PspFI	CCCAGC	1 cut(s)	539
PspGI	CCWGG	1 cut(s)	115
PspN4I	GGNNCC	1 cut(s)	146
PspPI	GGNCC	1 cut(s)	119
PstI	CTGCAG	1 cut(s)	237
RseI	CAYNNNNRTG	2 cut(s)	45, 48
SaqAI	TTAA	2 cut(s)	431, 601
SatI	GCNGC	2 cut(s)	21, 254
Sau3AI	GATC	4 cut(s)	28, 229, 301, 367
Sau96I	GGNCC	1 cut(s)	119
SchI	GAGTC	1 cut(s)	177
ScrFI	CCNGG	1 cut(s)	117
SduI	GDGCHC	1 cut(s)	511
SfaNI	GCATC	1 cut(s)	103
SfcI	CTRYAG	1 cut(s)	233
SfuI	TTCGAA	1 cut(s)	245
SinI	GGWCC	1 cut(s)	119
SmiMI	CAYNNNNRTG	2 cut(s)	45, 48
Sse9I	AATT	2 cut(s)	247, 336
SseBI	AGGCCT	1 cut(s)	115
SsiI	CCGC	1 cut(s)	254
SspMI	CTAG	1 cut(s)	276
StuI	AGGCCT	1 cut(s)	115
StyD4I	CCNGG	1 cut(s)	115
TaaI	ACNGT	1 cut(s)	444
TaqI	TCGA	1 cut(s)	245
TasI	AATT	2 cut(s)	247, 336
TauI	GCSGC	1 cut(s)	256
Tru1I	TTAA	2 cut(s)	431, 601
Tru9I	TTAA	2 cut(s)	431, 601
TscAI	CASTG	1 cut(s)	449
TseI	GCWGC	1 cut(s)	20
TspDTI	ATGAA	3 cut(s)	300, 408, 468
TspGWI	ACGGA	1 cut(s)	114
TspRI	CASTG	1 cut(s)	449
Van91I	CCANNNNNTGG	1 cut(s)	321
VpaK11BI	GGWCC	1 cut(s)	119
XapI	RAATTY	1 cut(s)	336
XspI	CTAG	1 cut(s)	276

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.