Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5D

Orthogroup ID

OG0004958

Physical Location & Seq

Genomic Coordinates Forward (+)

76088638 .. 76097928

Gene Structure 9291 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5DG483100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 972 bp

ATGGAAGGAGAAGATGGTGCTGCTTCTGATCATCTTCACCATCATCATGGTGTTTATGGGTTTCGAAACAATCACATAAAAACTCCTCATCAGCATCACAACCAACTCTTCAGGCCTGGTCCTCCGTTGACAGCCATAGACAGGTTCCTGTGGTCTCAAAACAATGCAAAGAACAAAGAGAGACTCGTCTCCTCAAATAATGGGTTTTCCTCATTTGGTGGTGCAATGGGTGATCTGCAGGCTTGTTCGAATTGGCCGCCGAGTAGTCTTGGAGAGGCTAGCTTGGATGAACTGCTTTTTCTTGATCATGGTGAGGCCATGACTTGGCCTCCAGAGAAAATTCAAAACCCTAACATGGGGTTCAAAGAAGATCAAGTGAAGGTGGGTTCTAACGGGGTGGGAAAGAGAGCTAAAAAGGGTTCATCTGTGCCTTTAATCAAAGGACAGTGGACAGATGAAGAAGACAGAAAGCTGATGAGATTGGTGAAGCAATATGGAGTGAGGAAATGGGCACAGATAGCTGAGAAGCTTGTGGGTAGAGCTGGGAAGCAATGTAGAGAAAGGTGGCATAATCATTTGCGCCCTGATATCAAGAACTTCTTCAACAACAACAATAATGTTCACAATAATAATCAGCAGCAGCAGCCATTACCCATCGACAATTACAATAATGGCCTTACTGCAAATCCAATGGATACTACTGATTGGTTTGTCACTTCAACTCCAAAACCAAACATGTACACCAACAGAAACTTCCAAGCAGCTGTTCACAATGTAGAATCTCACATCGGGAATTCTACAGAAGACCCGCGATCCATTAATCCCCCTACTACCCATCTCAGTTCTGATCTCTACCTCTCTTACCTCTTAAATGGAGGAGCCAGTTCATCATCATCTTCCGCGAATCATGATCATCATATGGGGAAAGTGGGAAAGCAAAGGGAAGGTGGTGGCTTGTTCCCTGGTCTTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000981 GO:0000988 GO:0000989 GO:0001067 GO:0001076 GO:0001134 GO:0001135 GO:0003006 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0006357 GO:0006935 GO:0007275 GO:0008150 GO:0009553 GO:0009605 GO:0009856 GO:0009889 GO:0010183 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0022414 GO:0031323 GO:0031326 GO:0032501 GO:0032502 GO:0040011 GO:0042221 GO:0042330 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0044212 GO:0044424 GO:0044464 GO:0044706 GO:0045595 GO:0045691 GO:0045697 GO:0048229 GO:0048856 GO:0048868 GO:0050789 GO:0050793 GO:0050794 GO:0050896 GO:0050918 GO:0051171 GO:0051239 GO:0051252 GO:0051704 GO:0060255 GO:0065007 GO:0080090 GO:0097159 GO:0140110 GO:1901363 GO:1903506 GO:2000026 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Myb_DNA-binding

Protein Analysis

323

Amino Acids

36.09

Weight (kDa)

8.75

Isoelectric Point (pI)

32.53

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Myb_DNA-binding	PF00249	147 - 193	3.5e-17	Myb-like DNA-binding domain
Myb_DNA-bind_6	PF13921	150 - 199	3.5e-16	Myb-like DNA-binding domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0004958)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G11050 AT5G58850
fragaria_vesca	FvH4_3g38310 FvH4_3g38320
malus_domestica	MD03G1073100.v1.1 MD11G1079000.v1.1
prunus_persica	Prupe.6G059700_v2.0.a1
pyrus_communis	pycom03g05910
rosa_chinensis	RchiOBHm_Chr5g0068891 RchiOBHm_Chr7g0211831
rosa_laevigata	RLG00000002962 RLG00000036017
rosa_multiflora	Rmu_sc0009005.1_g000013 Rmu_sc0013825.1_g000001 Rmu_sc0016160.1_g000005 Rmu_ssc0000378.1_g000003
rosa_roxburghii	Rroxscaffold_1G00011840 Rroxscaffold_3G00247400
rosa_rugosa	Rorug05G0394200 Rorug07G0129000
rosa_samantha	Rh5AG451300 Rh5BG470000 Rh5CG492500 Rh5DG483100 Rh7AG261700 Rh7BG255300 Rh7CG278300 Rh7DG268300
rosa_wichuraiana	Rw5G042150 Rw7G022320

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	324
AccII	CGCG	2 cut(s)	811, 902
AciI	CCGC	3 cut(s)	257, 809, 900
AclWI	GGATC	1 cut(s)	807
AcoI	YGGCCR	1 cut(s)	254
AcsI	RAATTY	2 cut(s)	339, 793
AcuI	CTGAAG	1 cut(s)	94
AfaI	GTAC	1 cut(s)	740
AfiI	CCNNNNNNNGG	4 cut(s)	141, 324, 355, 356
AflIII	ACRYGT	1 cut(s)	735
AgsI	TTSAA	4 cut(s)	344, 364, 604, 720
AjnI	CCWGG	2 cut(s)	115, 961
AjuI	GAANNNNNNNTTGG	4 cut(s)	737, 750, 769, 782
AluBI	AGCT	7 cut(s)	282, 410, 472, 521, 529, 542, 764
AluI	AGCT	7 cut(s)	282, 410, 472, 521, 529, 542, 764
Alw26I	GTCTC	3 cut(s)	159, 175, 193
AlwI	GGATC	1 cut(s)	807
AoxI	GGCC	5 cut(s)	113, 254, 315, 326, 673
ApeKI	GCWGC	5 cut(s)	20, 637, 640, 643, 761
ApoI	RAATTY	2 cut(s)	339, 793
AseI	ATTAAT	1 cut(s)	819
Asp700I	GAANNNNTTC	1 cut(s)	599
AspLEI	GCGC	1 cut(s)	582
AspS9I	GGNCC	1 cut(s)	119
AsuHPI	GGTGA	4 cut(s)	29, 242, 323, 496
AsuII	TTCGAA	2 cut(s)	64, 248
AsuNHI	GCTAGC	1 cut(s)	278
AvaII	GGWCC	1 cut(s)	119
BaeGI	GKGCMC	1 cut(s)	514
BbsI	GAAGAC	2 cut(s)	468, 810
BbvI	GCAGC	5 cut(s)	7, 649, 652, 655, 773
BccI	CCATC	4 cut(s)	8, 48, 662, 843
BciT130I	CCWGG	2 cut(s)	117, 963
BciVI	GTATCC	1 cut(s)	688
BclI	TGATCA	3 cut(s)	28, 304, 910
BcoDI	GTCTC	3 cut(s)	159, 175, 193
BfaI	CTAG	1 cut(s)	279
BfmI	CTRYAG	2 cut(s)	236, 798
BfuI	GTATCC	1 cut(s)	688
BisI	GCNGC	6 cut(s)	21, 257, 638, 641, 644, 762
BlsI	GCNGC	6 cut(s)	22, 258, 639, 642, 645, 763
Bme1390I	CCNGG	2 cut(s)	117, 963
Bme18I	GGWCC	1 cut(s)	119
BmgT120I	GGNCC	1 cut(s)	119
BmiI	GGNNCC	2 cut(s)	146, 880
BmrFI	CCNGG	2 cut(s)	117, 963
BmsI	GCATC	1 cut(s)	103
BmtI	GCTAGC	1 cut(s)	282
BpiI	GAAGAC	2 cut(s)	468, 810
BpmI	CTGGAG	1 cut(s)	315
Bpu14I	TTCGAA	2 cut(s)	64, 248
BsaI	GGTCTC	1 cut(s)	159
BsaJI	CCNNGG	1 cut(s)	961
BsaXI	ACNNNNNCTCC	4 cut(s)	313, 343, 706, 736
Bsc4I	CCNNNNNNNGG	4 cut(s)	141, 324, 355, 356
Bse1I	ACTGG	1 cut(s)	882
Bse3DI	GCAATG	2 cut(s)	231, 557
BseBI	CCWGG	2 cut(s)	117, 963
BseDI	CCNNGG	1 cut(s)	961
BseGI	GGATG	1 cut(s)	292
BseLI	CCNNNNNNNGG	4 cut(s)	141, 324, 355, 356
BseMI	GCAATG	2 cut(s)	231, 557
BseMII	CTCAG	2 cut(s)	513, 853
BseNI	ACTGG	1 cut(s)	882
BseRI	GAGGAG	3 cut(s)	75, 181, 891
BseSI	GKGCMC	1 cut(s)	514
BseXI	GCAGC	5 cut(s)	7, 649, 652, 655, 773
BseYI	CCCAGC	1 cut(s)	542
Bsh1236I	CGCG	2 cut(s)	811, 902
BshFI	GGCC	5 cut(s)	115, 256, 317, 328, 675
BslI	CCNNNNNNNGG	4 cut(s)	141, 324, 355, 356
BsmAI	GTCTC	3 cut(s)	159, 175, 193
BsmBI	CGTCTC	1 cut(s)	193
BsnI	GGCC	5 cut(s)	115, 256, 317, 328, 675
Bso31I	GGTCTC	1 cut(s)	159
Bsp119I	TTCGAA	2 cut(s)	64, 248
Bsp1286I	GDGCHC	1 cut(s)	514
Bsp1407I	TGTACA	1 cut(s)	738
Bsp143I	GATC	7 cut(s)	28, 232, 304, 370, 812, 847, 910
BspACI	CCGC	3 cut(s)	257, 809, 900
BspANI	GGCC	5 cut(s)	115, 256, 317, 328, 675
BspCNI	CTCAG	2 cut(s)	514, 852
BspFNI	CGCG	2 cut(s)	811, 902
BspHI	TCATGA	1 cut(s)	907
BspLI	GGNNCC	2 cut(s)	146, 880
BspMAI	CTGCAG	1 cut(s)	240
BspOI	GCTAGC	1 cut(s)	282
BspPI	GGATC	1 cut(s)	807
BspT104I	TTCGAA	2 cut(s)	64, 248
BspTNI	GGTCTC	1 cut(s)	159
BsrDI	GCAATG	2 cut(s)	231, 557
BsrGI	TGTACA	1 cut(s)	738
BsrI	ACTGG	1 cut(s)	882
BssECI	CCNNGG	1 cut(s)	961
BssMI	GATC	7 cut(s)	28, 232, 304, 370, 812, 847, 910
Bst2UI	CCWGG	2 cut(s)	117, 963
Bst4CI	ACNGT	1 cut(s)	447
Bst6I	CTCTTC	1 cut(s)	113
BstAUI	TGTACA	1 cut(s)	738
BstBI	TTCGAA	2 cut(s)	64, 248
BstC8I	GCNNGC	2 cut(s)	240, 280
BstDEI	CTNAG	2 cut(s)	522, 839
BstF5I	GGATG	1 cut(s)	292
BstFNI	CGCG	2 cut(s)	811, 902
BstHHI	GCGC	1 cut(s)	582
BstKTI	GATC	7 cut(s)	31, 235, 307, 373, 815, 850, 913
BstMAI	GTCTC	3 cut(s)	159, 175, 193
BstMBI	GATC	7 cut(s)	28, 232, 304, 370, 812, 847, 910
BstMWI	GCNNNNNNNGC	2 cut(s)	518, 643
BstNI	CCWGG	2 cut(s)	117, 963
BstNSI	RCATGY	1 cut(s)	739
BstSCI	CCNGG	2 cut(s)	115, 961
BstSFI	CTRYAG	2 cut(s)	236, 798
BstSLI	GKGCMC	1 cut(s)	514
BstUI	CGCG	2 cut(s)	811, 902
BstV1I	GCAGC	5 cut(s)	7, 649, 652, 655, 773
BstV2I	GAAGAC	2 cut(s)	468, 810
BstXI	CCANNNNNNTGG	1 cut(s)	47
BsuI	GTATCC	1 cut(s)	688
BsuRI	GGCC	5 cut(s)	115, 256, 317, 328, 675
BtsCI	GGATG	1 cut(s)	292
BtsIMutI	CAGTG	1 cut(s)	452
Cac8I	GCNNGC	2 cut(s)	240, 280
CciI	TCATGA	1 cut(s)	907
CfoI	GCGC	1 cut(s)	582
Cfr13I	GGNCC	1 cut(s)	119
Csp6I	GTAC	1 cut(s)	739
CviAII	CATG	6 cut(s)	47, 308, 319, 355, 736, 908
CviQI	GTAC	1 cut(s)	739
DdeI	CTNAG	2 cut(s)	522, 839
DpnI	GATC	7 cut(s)	30, 234, 306, 372, 814, 849, 912
DpnII	GATC	7 cut(s)	28, 232, 304, 370, 812, 847, 910
EaeI	YGGCCR	1 cut(s)	254
Eam1104I	CTCTTC	1 cut(s)	113
EarI	CTCTTC	1 cut(s)	113
Eco147I	AGGCCT	1 cut(s)	115
Eco31I	GGTCTC	1 cut(s)	159
Eco32I	GATATC	1 cut(s)	589
Eco47I	GGWCC	1 cut(s)	119
Eco57I	CTGAAG	1 cut(s)	94
EcoRI	GAATTC	1 cut(s)	793
EcoRII	CCWGG	2 cut(s)	115, 961
EcoRV	GATATC	1 cut(s)	589
Esp3I	CGTCTC	1 cut(s)	193
FaeI	CATG	6 cut(s)	50, 311, 322, 358, 739, 911
FalI	AAGNNNNNCTT	2 cut(s)	584, 616
FatI	CATG	6 cut(s)	46, 307, 318, 354, 735, 907
FauI	CCCGC	1 cut(s)	816
FauNDI	CATATG	1 cut(s)	918
FbaI	TGATCA	3 cut(s)	28, 304, 910
Fnu4HI	GCNGC	6 cut(s)	21, 257, 638, 641, 644, 762
FokI	GGATG	1 cut(s)	299
Fsp4HI	GCNGC	6 cut(s)	21, 257, 638, 641, 644, 762
FspBI	CTAG	1 cut(s)	279
GlaI	GCGC	1 cut(s)	581
GluI	GCNGC	6 cut(s)	21, 257, 638, 641, 644, 762
GsaI	CCCAGC	1 cut(s)	546
GsuI	CTGGAG	1 cut(s)	315
HaeIII	GGCC	5 cut(s)	115, 256, 317, 328, 675
HhaI	GCGC	1 cut(s)	582
Hin1II	CATG	6 cut(s)	50, 311, 322, 358, 739, 911
Hin6I	GCGC	1 cut(s)	580
HinP1I	GCGC	1 cut(s)	580
HincII	GTYRAC	1 cut(s)	129
HindII	GTYRAC	1 cut(s)	129
HindIII	AAGCTT	1 cut(s)	527
HinfI	GANTC	3 cut(s)	183, 779, 904
HphI	GGTGA	4 cut(s)	29, 242, 323, 496
Hpy166II	GTNNAC	5 cut(s)	129, 450, 622, 741, 769
Hpy188I	TCNGA	2 cut(s)	28, 847
Hpy188III	TCNNGA	5 cut(s)	302, 332, 592, 790, 908
Hpy8I	GTNNAC	5 cut(s)	129, 450, 622, 741, 769
HpyAV	CCTTC	2 cut(s)	373, 938
HpyCH4III	ACNGT	1 cut(s)	447
HpyCH4V	TGCA	4 cut(s)	167, 224, 238, 683
HpyF10VI	GCNNNNNNNGC	2 cut(s)	518, 643
HpyF3I	CTNAG	2 cut(s)	522, 839
Hsp92II	CATG	6 cut(s)	50, 311, 322, 358, 739, 911
HspAI	GCGC	1 cut(s)	580
Ksp22I	TGATCA	3 cut(s)	28, 304, 910
Kzo9I	GATC	7 cut(s)	28, 232, 304, 370, 812, 847, 910
LmnI	GCTCC	1 cut(s)	878
Lsp1109I	GCAGC	5 cut(s)	7, 649, 652, 655, 773
LweI	GCATC	1 cut(s)	103
MaeI	CTAG	1 cut(s)	279
MaeIII	GTNAC	1 cut(s)	712
MalI	GATC	7 cut(s)	30, 234, 306, 372, 814, 849, 912
MboI	GATC	7 cut(s)	28, 232, 304, 370, 812, 847, 910
MboII	GAAGA	9 cut(s)	23, 26, 100, 380, 470, 473, 592, 815, 888
MhlI	GDGCHC	1 cut(s)	514
MluCI	AATT	4 cut(s)	250, 339, 661, 793
MlyI	GAGTC	1 cut(s)	177
MroXI	GAANNNNTTC	1 cut(s)	599
MseI	TTAA	4 cut(s)	434, 819, 869, 970
MslI	CAYNNNNRTG	2 cut(s)	45, 48
MspA1I	CMGCKG	1 cut(s)	764
MspR9I	CCNGG	2 cut(s)	117, 963
MvaI	CCWGG	2 cut(s)	117, 963
MvnI	CGCG	2 cut(s)	811, 902
MwoI	GCNNNNNNNGC	2 cut(s)	518, 643
NdeI	CATATG	1 cut(s)	918
NdeII	GATC	7 cut(s)	28, 232, 304, 370, 812, 847, 910
NheI	GCTAGC	1 cut(s)	278
NlaIII	CATG	6 cut(s)	50, 311, 322, 358, 739, 911
NlaIV	GGNNCC	2 cut(s)	146, 880
NmeAIII	GCCGAG	1 cut(s)	285
NmuCI	GTSAC	1 cut(s)	712
NspI	RCATGY	1 cut(s)	739
NspV	TTCGAA	2 cut(s)	64, 248
PagI	TCATGA	1 cut(s)	907
PceI	AGGCCT	1 cut(s)	115
PciI	ACATGT	1 cut(s)	735
PdmI	GAANNNNTTC	1 cut(s)	599
PfeI	GAWTC	2 cut(s)	779, 904
PflMI	CCANNNNNTGG	1 cut(s)	324
PkrI	GCNGC	6 cut(s)	22, 258, 639, 642, 645, 763
PleI	GAGTC	1 cut(s)	177
PpsI	GAGTC	1 cut(s)	177
PscI	ACATGT	1 cut(s)	735
PshBI	ATTAAT	1 cut(s)	819
Psp6I	CCWGG	2 cut(s)	115, 961
PspFI	CCCAGC	1 cut(s)	542
PspGI	CCWGG	2 cut(s)	115, 961
PspN4I	GGNNCC	2 cut(s)	146, 880
PspPI	GGNCC	1 cut(s)	119
PstI	CTGCAG	1 cut(s)	240
PvuII	CAGCTG	1 cut(s)	764
RsaI	GTAC	1 cut(s)	740
RsaNI	GTAC	1 cut(s)	739
RseI	CAYNNNNRTG	2 cut(s)	45, 48
SaqAI	TTAA	4 cut(s)	434, 819, 869, 970
SatI	GCNGC	6 cut(s)	21, 257, 638, 641, 644, 762
Sau3AI	GATC	7 cut(s)	28, 232, 304, 370, 812, 847, 910
Sau96I	GGNCC	1 cut(s)	119
SchI	GAGTC	1 cut(s)	177
ScrFI	CCNGG	2 cut(s)	117, 963
SduI	GDGCHC	1 cut(s)	514
SfaNI	GCATC	1 cut(s)	103
SfcI	CTRYAG	2 cut(s)	236, 798
SfuI	TTCGAA	2 cut(s)	64, 248
SinI	GGWCC	1 cut(s)	119
SmiMI	CAYNNNNRTG	2 cut(s)	45, 48
Sse9I	AATT	4 cut(s)	250, 339, 661, 793
SseBI	AGGCCT	1 cut(s)	115
SsiI	CCGC	3 cut(s)	257, 809, 900
SspMI	CTAG	1 cut(s)	279
StuI	AGGCCT	1 cut(s)	115
StyD4I	CCNGG	2 cut(s)	115, 961
TaaI	ACNGT	1 cut(s)	447
TaqI	TCGA	3 cut(s)	64, 248, 657
TasI	AATT	4 cut(s)	250, 339, 661, 793
TatI	WGTACW	1 cut(s)	738
TauI	GCSGC	1 cut(s)	259
TfiI	GAWTC	2 cut(s)	779, 904
Tru1I	TTAA	4 cut(s)	434, 819, 869, 970
Tru9I	TTAA	4 cut(s)	434, 819, 869, 970
TscAI	CASTG	1 cut(s)	452
TseFI	GTSAC	1 cut(s)	712
TseI	GCWGC	5 cut(s)	20, 637, 640, 643, 761
Tsp45I	GTSAC	1 cut(s)	712
TspDTI	ATGAA	4 cut(s)	303, 411, 471, 876
TspGWI	ACGGA	1 cut(s)	114
TspRI	CASTG	1 cut(s)	452
Van91I	CCANNNNNTGG	1 cut(s)	324
VpaK11BI	GGWCC	1 cut(s)	119
VspI	ATTAAT	1 cut(s)	819
XapI	RAATTY	2 cut(s)	339, 793
XceI	RCATGY	1 cut(s)	739
XmnI	GAANNNNTTC	1 cut(s)	599
XspI	CTAG	1 cut(s)	279

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.