Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb3

Orthogroup ID

OG0004958

Physical Location & Seq

Genomic Coordinates Forward (+)

32718694 .. 32720846

Gene Structure 2153 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_3g38320.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 762 bp

ATGGTGTTCCTCATTTGTGGTGCGATGGCTGATCTGCAGCCTTGTTCGAATTGGCCTCCGAGTAGTCTCGAGAAGCCAGCTTGGATGAAATGCTCTTTATTAATCATGGGTGATGCCACTGACTTGGCCACCAGAGGAAAATCCAAAACCCTAACATGGTGTTCAAAGAAGATCAGAATGAAGAGAGCAATATTAGGCACCACTACCCCTACTAGCTCTTCCACTCTCACCCAGGATGAACCTTCGAAAATCCCCTTCAACATTGTGCTCTCGGACCCATCGGATTTATCTAGTTGTGATCACTCTCCATTGAACATTGCAGCAGATTCATACAATGATGATGAACTTCTCTTCATGCAGAACTTCTTCAACAACAACAATAATGTTCAAAATCACAATCAGCAGCAGCAGCCATTACCCATCGACAATTACAATAATGGTCTTACTGCAACTCCAATGGATACTACTGAAAACGCGTCATCCATTAATCCCGTTATCAGTGCTGATCACTACCTCTCTTACCTCTTAAATGGAGGAGCAAGTTCATCATCATCATCCGCGAATCATGATCATCACATGGGGAAGAATTGCTATAACATGAACATTGATTTGGTGACTCATCAACAGCAAGCAGCAGCTTCTGCAACTGAAAGGAGAGAGATGGATCTGATTGAGATGGTTTCTTCTTCGTCTTCTTCCCAGTTTGCTCAAGGAAAATACCAATGTGGTTCAGTTCTTGTTGCTCAAATGGGTAGCGTGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000981 GO:0000988 GO:0000989 GO:0001067 GO:0001076 GO:0001134 GO:0001135 GO:0003006 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0006357 GO:0006935 GO:0007275 GO:0008150 GO:0009553 GO:0009605 GO:0009856 GO:0009889 GO:0010183 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0022414 GO:0031323 GO:0031326 GO:0032501 GO:0032502 GO:0040011 GO:0042221 GO:0042330 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0044212 GO:0044424 GO:0044464 GO:0044706 GO:0045595 GO:0045691 GO:0045697 GO:0048229 GO:0048856 GO:0048868 GO:0050789 GO:0050793 GO:0050794 GO:0050896 GO:0050918 GO:0051171 GO:0051239 GO:0051252 GO:0051704 GO:0060255 GO:0065007 GO:0080090 GO:0097159 GO:0140110 GO:1901363 GO:1903506 GO:2000026 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Myb_DNA-binding

Protein Analysis

254

Amino Acids

27.58

Weight (kDa)

5.22

Isoelectric Point (pI)

47.48

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004958)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G11050 AT5G58850
fragaria_vesca	FvH4_3g38310 FvH4_3g38320
malus_domestica	MD03G1073100.v1.1 MD11G1079000.v1.1
prunus_persica	Prupe.6G059700_v2.0.a1
pyrus_communis	pycom03g05910
rosa_chinensis	RchiOBHm_Chr5g0068891 RchiOBHm_Chr7g0211831
rosa_laevigata	RLG00000002962 RLG00000036017
rosa_multiflora	Rmu_sc0009005.1_g000013 Rmu_sc0013825.1_g000001 Rmu_sc0016160.1_g000005 Rmu_ssc0000378.1_g000003
rosa_roxburghii	Rroxscaffold_1G00011840 Rroxscaffold_3G00247400
rosa_rugosa	Rorug05G0394200 Rorug07G0129000
rosa_samantha	Rh5AG451300 Rh5BG470000 Rh5CG492500 Rh5DG483100 Rh7AG261700 Rh7BG255300 Rh7CG278300 Rh7DG268300
rosa_wichuraiana	Rw5G042150 Rw7G022320

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	197
AccII	CGCG	2 cut(s)	476, 560
AciI	CCGC	1 cut(s)	558
AclWI	GGATC	1 cut(s)	672
AcoI	YGGCCR	1 cut(s)	126
AfiI	CCNNNNNNNGG	1 cut(s)	156
AflIII	ACRYGT	1 cut(s)	474
AgsI	TTSAA	5 cut(s)	165, 259, 313, 370, 389
AjnI	CCWGG	1 cut(s)	231
AjuI	GAANNNNNNNTTGG	2 cut(s)	593, 625
AluBI	AGCT	3 cut(s)	80, 216, 638
AluI	AGCT	3 cut(s)	80, 216, 638
Alw21I	GWGCWC	1 cut(s)	270
Alw26I	GTCTC	1 cut(s)	71
AlwI	GGATC	1 cut(s)	672
AlwNI	CAGNNNCTG	1 cut(s)	641
Ama87I	CYCGRG	1 cut(s)	68
AoxI	GGCC	2 cut(s)	53, 126
ApeKI	GCWGC	7 cut(s)	37, 320, 403, 406, 409, 632, 635
AseI	ATTAAT	2 cut(s)	101, 486
Asp700I	GAANNNNTTC	1 cut(s)	365
AspS9I	GGNCC	1 cut(s)	274
AsuHPI	GGTGA	3 cut(s)	122, 220, 625
AsuII	TTCGAA	2 cut(s)	47, 245
AvaI	CYCGRG	1 cut(s)	68
AvaII	GGWCC	1 cut(s)	274
BalI	TGGCCA	1 cut(s)	128
BanI	GGYRCC	1 cut(s)	197
BbsI	GAAGAC	1 cut(s)	684
Bbv12I	GWGCWC	1 cut(s)	270
BbvI	GCAGC	7 cut(s)	49, 332, 415, 418, 421, 644, 647
BccI	CCATC	5 cut(s)	19, 286, 428, 655, 670
BciT130I	CCWGG	1 cut(s)	233
BciVI	GTATCC	1 cut(s)	454
BclI	TGATCA	3 cut(s)	298, 505, 568
BcoDI	GTCTC	1 cut(s)	71
BfaI	CTAG	2 cut(s)	213, 291
BfmI	CTRYAG	1 cut(s)	35
BfuI	GTATCC	1 cut(s)	454
BisI	GCNGC	7 cut(s)	38, 321, 404, 407, 410, 633, 636
BlsI	GCNGC	7 cut(s)	39, 322, 405, 408, 411, 634, 637
Bme1390I	CCNGG	1 cut(s)	233
Bme18I	GGWCC	1 cut(s)	274
BmeT110I	CYCGRG	1 cut(s)	68
BmgT120I	GGNCC	1 cut(s)	274
BmiI	GGNNCC	2 cut(s)	199, 276
BmrFI	CCNGG	1 cut(s)	233
BmrI	ACTGGG	1 cut(s)	694
BmsI	GCATC	1 cut(s)	103
BmuI	ACTGGG	1 cut(s)	694
BpiI	GAAGAC	1 cut(s)	684
Bpu14I	TTCGAA	2 cut(s)	47, 245
BpuEI	CTTGAG	1 cut(s)	693
BsaJI	CCNNGG	1 cut(s)	231
BsaXI	ACNNNNNCTCC	2 cut(s)	436, 466
Bsc4I	CCNNNNNNNGG	1 cut(s)	156
Bse1I	ACTGG	1 cut(s)	700
Bse3DI	GCAATG	1 cut(s)	315
BseBI	CCWGG	1 cut(s)	233
BseDI	CCNNGG	1 cut(s)	231
BseGI	GGATG	4 cut(s)	90, 241, 479, 554
BseLI	CCNNNNNNNGG	1 cut(s)	156
BseMI	GCAATG	1 cut(s)	315
BseNI	ACTGG	1 cut(s)	700
BseRI	GAGGAG	1 cut(s)	549
BseXI	GCAGC	7 cut(s)	49, 332, 415, 418, 421, 644, 647
Bsh1236I	CGCG	2 cut(s)	476, 560
BshFI	GGCC	2 cut(s)	55, 128
BshNI	GGYRCC	1 cut(s)	197
BsiHKAI	GWGCWC	1 cut(s)	270
BsiHKCI	CYCGRG	1 cut(s)	68
BslI	CCNNNNNNNGG	1 cut(s)	156
BsmAI	GTCTC	1 cut(s)	71
BsnI	GGCC	2 cut(s)	55, 128
BsoBI	CYCGRG	1 cut(s)	68
Bsp119I	TTCGAA	2 cut(s)	47, 245
Bsp1286I	GDGCHC	1 cut(s)	270
Bsp143I	GATC	6 cut(s)	31, 171, 298, 505, 568, 664
BspACI	CCGC	1 cut(s)	558
BspANI	GGCC	2 cut(s)	55, 128
BspFNI	CGCG	2 cut(s)	476, 560
BspHI	TCATGA	1 cut(s)	565
BspLI	GGNNCC	2 cut(s)	199, 276
BspMAI	CTGCAG	1 cut(s)	39
BspPI	GGATC	1 cut(s)	672
BspQI	GCTCTTC	1 cut(s)	223
BspT104I	TTCGAA	2 cut(s)	47, 245
BspT107I	GGYRCC	1 cut(s)	197
BsrDI	GCAATG	1 cut(s)	315
BsrI	ACTGG	1 cut(s)	700
BssECI	CCNNGG	1 cut(s)	231
BssMI	GATC	6 cut(s)	31, 171, 298, 505, 568, 664
Bst2UI	CCWGG	1 cut(s)	233
Bst6I	CTCTTC	3 cut(s)	176, 223, 356
BstAPI	GCANNNNNTGC	1 cut(s)	641
BstBI	TTCGAA	2 cut(s)	47, 245
BstC8I	GCNNGC	2 cut(s)	78, 630
BstF5I	GGATG	4 cut(s)	90, 241, 479, 554
BstFNI	CGCG	2 cut(s)	476, 560
BstKTI	GATC	6 cut(s)	34, 174, 301, 508, 571, 667
BstMAI	GTCTC	1 cut(s)	71
BstMBI	GATC	6 cut(s)	31, 171, 298, 505, 568, 664
BstMWI	GCNNNNNNNGC	2 cut(s)	409, 641
BstNI	CCWGG	1 cut(s)	233
BstSCI	CCNGG	1 cut(s)	231
BstSFI	CTRYAG	1 cut(s)	35
BstUI	CGCG	2 cut(s)	476, 560
BstV1I	GCAGC	7 cut(s)	49, 332, 415, 418, 421, 644, 647
BstV2I	GAAGAC	1 cut(s)	684
BstX2I	RGATCY	1 cut(s)	664
BstXI	CCANNNNNNTGG	1 cut(s)	124
BstYI	RGATCY	1 cut(s)	664
BsuI	GTATCC	1 cut(s)	454
BsuRI	GGCC	2 cut(s)	55, 128
BtgZI	GCGATG	1 cut(s)	38
BtsCI	GGATG	4 cut(s)	90, 241, 479, 554
BtsIMutI	CAGTG	2 cut(s)	117, 505
Cac8I	GCNNGC	2 cut(s)	78, 630
CaiI	CAGNNNCTG	1 cut(s)	641
CciI	TCATGA	1 cut(s)	565
Cfr13I	GGNCC	1 cut(s)	274
CseI	GACGC	1 cut(s)	465
CviAII	CATG	6 cut(s)	106, 156, 355, 566, 577, 598
CviJI	RGCY	9 cut(s)	29, 40, 55, 76, 80, 128, 216, 412, 638
CviKI_1	RGCY	9 cut(s)	29, 40, 55, 76, 80, 128, 216, 412, 638
DpnI	GATC	6 cut(s)	33, 173, 300, 507, 570, 666
DpnII	GATC	6 cut(s)	31, 171, 298, 505, 568, 664
EaeI	YGGCCR	1 cut(s)	126
Eam1104I	CTCTTC	3 cut(s)	176, 223, 356
EarI	CTCTTC	3 cut(s)	176, 223, 356
Eco47I	GGWCC	1 cut(s)	274
Eco88I	CYCGRG	1 cut(s)	68
EcoRII	CCWGG	1 cut(s)	231
FaeI	CATG	6 cut(s)	109, 159, 358, 569, 580, 601
FaiI	YATR	8 cut(s)	107, 157, 331, 356, 567, 578, 594, 599
FatI	CATG	6 cut(s)	105, 155, 354, 565, 576, 597
FbaI	TGATCA	3 cut(s)	298, 505, 568
Fnu4HI	GCNGC	7 cut(s)	38, 321, 404, 407, 410, 633, 636
FokI	GGATG	4 cut(s)	97, 248, 466, 541
Fsp4HI	GCNGC	7 cut(s)	38, 321, 404, 407, 410, 633, 636
FspBI	CTAG	2 cut(s)	213, 291
GluI	GCNGC	7 cut(s)	38, 321, 404, 407, 410, 633, 636
HaeIII	GGCC	2 cut(s)	55, 128
HgaI	GACGC	1 cut(s)	465
Hin1II	CATG	6 cut(s)	109, 159, 358, 569, 580, 601
HinfI	GANTC	3 cut(s)	326, 562, 616
HphI	GGTGA	3 cut(s)	122, 220, 625
Hpy188I	TCNGA	5 cut(s)	60, 176, 274, 283, 669
Hpy188III	TCNNGA	3 cut(s)	68, 70, 566
HpyAV	CCTTC	2 cut(s)	252, 265
HpyCH4V	TGCA	5 cut(s)	37, 320, 358, 449, 644
HpyF10VI	GCNNNNNNNGC	2 cut(s)	409, 641
Hsp92II	CATG	6 cut(s)	109, 159, 358, 569, 580, 601
Ksp22I	TGATCA	3 cut(s)	298, 505, 568
Kzo9I	GATC	6 cut(s)	31, 171, 298, 505, 568, 664
LguI	GCTCTTC	1 cut(s)	223
LmnI	GCTCC	1 cut(s)	536
LpnPI	CCDG	5 cut(s)	90, 145, 218, 245, 713
Lsp1109I	GCAGC	7 cut(s)	49, 332, 415, 418, 421, 644, 647
LweI	GCATC	1 cut(s)	103
MaeI	CTAG	2 cut(s)	213, 291
MaeIII	GTNAC	1 cut(s)	613
MalI	GATC	6 cut(s)	33, 173, 300, 507, 570, 666
MboI	GATC	6 cut(s)	31, 171, 298, 505, 568, 664
MflI	RGATCY	1 cut(s)	664
MhlI	GDGCHC	1 cut(s)	270
MlsI	TGGCCA	1 cut(s)	128
MluCI	AATT	3 cut(s)	49, 427, 586
MluI	ACGCGT	1 cut(s)	474
MluNI	TGGCCA	1 cut(s)	128
MlyI	GAGTC	1 cut(s)	610
MnlI	CCTC	6 cut(s)	20, 66, 128, 524, 527, 533
Mox20I	TGGCCA	1 cut(s)	128
MroXI	GAANNNNTTC	1 cut(s)	365
MscI	TGGCCA	1 cut(s)	128
MseI	TTAA	3 cut(s)	101, 486, 527
Msp20I	TGGCCA	1 cut(s)	128
MspR9I	CCNGG	1 cut(s)	233
MvaI	CCWGG	1 cut(s)	233
MvnI	CGCG	2 cut(s)	476, 560
MwoI	GCNNNNNNNGC	2 cut(s)	409, 641
NdeII	GATC	6 cut(s)	31, 171, 298, 505, 568, 664
NlaIII	CATG	6 cut(s)	109, 159, 358, 569, 580, 601
NlaIV	GGNNCC	2 cut(s)	199, 276
NmuCI	GTSAC	1 cut(s)	613
NspV	TTCGAA	2 cut(s)	47, 245
PaeR7I	CTCGAG	1 cut(s)	68
PagI	TCATGA	1 cut(s)	565
PciSI	GCTCTTC	1 cut(s)	223
PdmI	GAANNNNTTC	1 cut(s)	365
PfeI	GAWTC	2 cut(s)	326, 562
PkrI	GCNGC	7 cut(s)	39, 322, 405, 408, 411, 634, 637
PleI	GAGTC	1 cut(s)	610
PpsI	GAGTC	1 cut(s)	610
PshBI	ATTAAT	2 cut(s)	101, 486
Psp6I	CCWGG	1 cut(s)	231
PspGI	CCWGG	1 cut(s)	231
PspN4I	GGNNCC	2 cut(s)	199, 276
PspPI	GGNCC	1 cut(s)	274
PstI	CTGCAG	1 cut(s)	39
PstNI	CAGNNNCTG	1 cut(s)	641
PsuI	RGATCY	1 cut(s)	664
SapI	GCTCTTC	1 cut(s)	223
SaqAI	TTAA	3 cut(s)	101, 486, 527
SatI	GCNGC	7 cut(s)	38, 321, 404, 407, 410, 633, 636
Sau3AI	GATC	6 cut(s)	31, 171, 298, 505, 568, 664
Sau96I	GGNCC	1 cut(s)	274
SchI	GAGTC	1 cut(s)	610
ScrFI	CCNGG	1 cut(s)	233
SduI	GDGCHC	1 cut(s)	270
SetI	ASST	6 cut(s)	82, 218, 244, 516, 525, 640
SfaNI	GCATC	1 cut(s)	103
SfcI	CTRYAG	1 cut(s)	35
Sfr274I	CTCGAG	1 cut(s)	68
SfuI	TTCGAA	2 cut(s)	47, 245
SinI	GGWCC	1 cut(s)	274
SlaI	CTCGAG	1 cut(s)	68
SmlI	CTYRAG	2 cut(s)	68, 708
SmoI	CTYRAG	2 cut(s)	68, 708
Sse9I	AATT	3 cut(s)	49, 427, 586
SsiI	CCGC	1 cut(s)	558
SspI	AATATT	1 cut(s)	192
SspMI	CTAG	2 cut(s)	213, 291
StyD4I	CCNGG	1 cut(s)	231
TaqI	TCGA	4 cut(s)	47, 69, 245, 423
TasI	AATT	3 cut(s)	49, 427, 586
TfiI	GAWTC	2 cut(s)	326, 562
Tru1I	TTAA	3 cut(s)	101, 486, 527
Tru9I	TTAA	3 cut(s)	101, 486, 527
TscAI	CASTG	2 cut(s)	124, 505
TseFI	GTSAC	1 cut(s)	613
TseI	GCWGC	7 cut(s)	37, 320, 403, 406, 409, 632, 635
Tsp45I	GTSAC	1 cut(s)	613
TspDTI	ATGAA	8 cut(s)	101, 194, 252, 318, 343, 357, 534, 614
TspRI	CASTG	2 cut(s)	124, 505
VpaK11BI	GGWCC	1 cut(s)	274
VspI	ATTAAT	2 cut(s)	101, 486
XhoI	CTCGAG	1 cut(s)	68
XmnI	GAANNNNTTC	1 cut(s)	365
XspI	CTAG	2 cut(s)	213, 291

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.