Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr03

Orthogroup ID

OG0004958

Physical Location & Seq

Genomic Coordinates Reverse (-)

5950875 .. 5953502

Gene Structure 2628 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD03G1073100.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1506 bp

ATGCTATTTGTCAAGCTATCGTATGGGATTGGAGGTATAGGAGGAGGATGGGGTGGTGGTGATCTTGGAGTTTATGGGTTTAGAAACAACACACAACATCATAGCATATATAAAACAGGTCCTCCATTGACAGCCATAGATAGGTTCTTGTGGGGAAGTCATCAAAGTCAAAACAATGCAAGCAACAAAGATCATCAGAAGGTGGTTTCCTCAAATGGGTTGAGTGGTTTTGCTTCTTTTGGCGGTGGTGGTGCAATAATTAGTCATGAGGCAGCAGCTTCTTGGCCTAGCAATTATAGTGCTACTACTAATCATCTCCAAGAGCCAAGCTTTGTAGATGAATTTTTAGTTGGACAAGGAGAAGCCTTGATGATGAGTTGGTTTCAAGAGCAAAACCCTAATGCCACAGGTGGTTTCAGAGAAGAAGGAAGGGTTTCCGAAAGGAATTGCAAAGCGGTCGGAAAGAGAGCTAAAAAGGGTTTAACTGCTGCTACTTTAATAAAGGGACAGTGGACTGATGGAGAAGACAGGAAGTTGATGAGGCTGGTGAAGCAATATGGAGTCAGAAAATGGGCACAGATAGCTGAGAAATTGGTGGGAAGGGCTGGCAAGCAGTGCAGAGAAAGATGGCACAATCATTTGCGCCCCGATATCAAGAAAGATAGCTGGACTGAAGAGGAGGAGGCGATACTTGTTGACGCTCATACTGAAGTTGGAAACCGTTGGGCAGAGATTGCAAAACGCATTCCAGGAAGAACTGAAAACGCCATAAAAAACCATTGGAATGCAACAAAAAGGAGGCAGAATTCAAGGAGAAAAAACAAGCAAACTGAAGGCAAAAATGGAAACAACAAGAAGCCTCAGTCATCCATTCTCCAAAACTACATCAGGAGCAAGAACCTCATGAACAATAACAACTCCAATATTTCCTCTAGTACCCCTACAAGCTCTTCCACCCTCTCTCATGAAGATCCATCGAAAACCTACCTCAACATTTTGGTCACAGAGCCATCTGATCAGTCCACTACTAGCAACTGTTGTGATTCTCCATTGAATTTGGCTGACTCTTTATACAATGATGAGGAACTTGTTTTCATGCAAAATTTCTTCACCAACAATCCTTACAATCATCCTCAACAGCCTTCCAATTCCACTGAGAACAATGTTGGACTAATTGTTAGCCCAATGGAAGCCTCACAAAATCCAAACATGTACAATTTTAGTAGTTCTATAATTAATCCCACTACTACTACCACTACAACCAATACCCCCAGTCCTACTACTCCTACCCCTCAGTATTCTGACCTATACCTCTTAAATGGAGCAGCCAATTCATCATCTTATAATCCCAATGATCATCATCCTCACTTAGGGTTTTACAACACAAACATGGAATATTTGGTGTCACATGATCATCATCATCATCTTCAAGCTGCTGCTTCTGCTTCAAACGAAGGGCGAGAGATGGATTTGATAGAGATGGTGTCTGCTTCTCAAGGTACCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000981 GO:0000988 GO:0000989 GO:0001067 GO:0001076 GO:0001134 GO:0001135 GO:0003006 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0006357 GO:0006935 GO:0007275 GO:0008150 GO:0009553 GO:0009605 GO:0009856 GO:0009889 GO:0010183 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0022414 GO:0031323 GO:0031326 GO:0032501 GO:0032502 GO:0040011 GO:0042221 GO:0042330 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0044212 GO:0044424 GO:0044464 GO:0044706 GO:0045595 GO:0045691 GO:0045697 GO:0048229 GO:0048856 GO:0048868 GO:0050789 GO:0050793 GO:0050794 GO:0050896 GO:0050918 GO:0051171 GO:0051239 GO:0051252 GO:0051704 GO:0060255 GO:0065007 GO:0080090 GO:0097159 GO:0140110 GO:1901363 GO:1903506 GO:2000026 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Myb_DNA-binding

Protein Analysis

502

Amino Acids

55.51

Weight (kDa)

7.78

Isoelectric Point (pI)

45.46

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Myb_DNA-binding	PF00249	168 - 214	1.8e-15	Myb-like DNA-binding domain
Myb_DNA-bind_6	PF13921	171 - 228	2.4e-19	Myb-like DNA-binding domain
Myb_DNA-binding	PF00249	220 - 262	3.6e-16	Myb-like DNA-binding domain
Myb_DNA-bind_6	PF13921	223 - 266	1.9e-08	Myb-like DNA-binding domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004958)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G11050 AT5G58850
fragaria_vesca	FvH4_3g38310 FvH4_3g38320
malus_domestica	MD03G1073100.v1.1 MD11G1079000.v1.1
prunus_persica	Prupe.6G059700_v2.0.a1
pyrus_communis	pycom03g05910
rosa_chinensis	RchiOBHm_Chr5g0068891 RchiOBHm_Chr7g0211831
rosa_laevigata	RLG00000002962 RLG00000036017
rosa_multiflora	Rmu_sc0009005.1_g000013 Rmu_sc0013825.1_g000001 Rmu_sc0016160.1_g000005 Rmu_ssc0000378.1_g000003
rosa_roxburghii	Rroxscaffold_1G00011840 Rroxscaffold_3G00247400
rosa_rugosa	Rorug05G0394200 Rorug07G0129000
rosa_samantha	Rh5AG451300 Rh5BG470000 Rh5CG492500 Rh5DG483100 Rh7AG261700 Rh7BG255300 Rh7CG278300 Rh7DG268300
rosa_wichuraiana	Rw5G042150 Rw7G022320

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	1344
Acc65I	GGTACC	1 cut(s)	1499
AccB1I	GGYRCC	1 cut(s)	1499
AciI	CCGC	2 cut(s)	243, 455
AclWI	GGATC	1 cut(s)	965
AcsI	RAATTY	4 cut(s)	341, 805, 1054, 1102
AcuI	CTGAAG	3 cut(s)	693, 729, 852
AfaI	GTAC	3 cut(s)	937, 1214, 1501
AfiI	CCNNNNNNNGG	3 cut(s)	141, 216, 1370
AflIII	ACRYGT	1 cut(s)	1209
AgsI	TTSAA	5 cut(s)	386, 810, 1054, 1430, 1449
AjnI	CCWGG	1 cut(s)	748
AjuI	GAANNNNNNNTTGG	2 cut(s)	333, 365
AluBI	AGCT	8 cut(s)	16, 278, 330, 470, 584, 666, 948, 1433
AluI	AGCT	8 cut(s)	16, 278, 330, 470, 584, 666, 948, 1433
AlwI	GGATC	1 cut(s)	965
AoxI	GGCC	1 cut(s)	284
ApeKI	GCWGC	6 cut(s)	272, 275, 488, 1325, 1433, 1436
ApoI	RAATTY	4 cut(s)	341, 805, 1054, 1102
AseI	ATTAAT	1 cut(s)	1236
Asp700I	GAANNNNTTC	1 cut(s)	433
Asp718I	GGTACC	1 cut(s)	1499
AspLEI	GCGC	1 cut(s)	645
AspS9I	GGNCC	1 cut(s)	119
AsuHPI	GGTGA	3 cut(s)	71, 559, 1102
AvaII	GGWCC	1 cut(s)	119
BaeGI	GKGCMC	1 cut(s)	577
BanI	GGYRCC	1 cut(s)	1499
BbsI	GAAGAC	1 cut(s)	531
BbvI	GCAGC	6 cut(s)	284, 287, 475, 1337, 1420, 1423
BccI	CCATC	7 cut(s)	42, 512, 621, 982, 1018, 1459, 1474
BcgI	CGANNNNNNTGC	2 cut(s)	439, 473
BciT130I	CCWGG	1 cut(s)	750
BclI	TGATCA	3 cut(s)	1015, 1354, 1411
BfaI	CTAG	3 cut(s)	288, 933, 1029
BisI	GCNGC	6 cut(s)	273, 276, 489, 1326, 1434, 1437
BlsI	GCNGC	6 cut(s)	274, 277, 490, 1327, 1435, 1438
Bme1390I	CCNGG	1 cut(s)	750
Bme18I	GGWCC	1 cut(s)	119
BmgT120I	GGNCC	1 cut(s)	119
BmiI	GGNNCC	1 cut(s)	1501
BmrFI	CCNGG	1 cut(s)	750
BmrI	ACTGGG	1 cut(s)	1266
BmuI	ACTGGG	1 cut(s)	1266
BpiI	GAAGAC	1 cut(s)	531
BpuEI	CTTGAG	1 cut(s)	1479
BsaBI	GATNNNNATC	2 cut(s)	1359, 1416
BsaXI	ACNNNNNCTCC	2 cut(s)	106, 136
Bsc4I	CCNNNNNNNGG	3 cut(s)	141, 216, 1370
Bse1I	ACTGG	1 cut(s)	1272
Bse8I	GATNNNNATC	2 cut(s)	1359, 1416
BseBI	CCWGG	1 cut(s)	750
BseGI	GGATG	4 cut(s)	53, 866, 1129, 1360
BseJI	GATNNNNATC	2 cut(s)	1359, 1416
BseLI	CCNNNNNNNGG	3 cut(s)	141, 216, 1370
BseMII	CTCAG	4 cut(s)	576, 875, 1146, 1307
BseNI	ACTGG	1 cut(s)	1272
BseRI	GAGGAG	3 cut(s)	57, 692, 695
BseSI	GKGCMC	1 cut(s)	577
BseXI	GCAGC	6 cut(s)	284, 287, 475, 1337, 1420, 1423
BsgI	GTGCAG	1 cut(s)	637
Bsh1285I	CGRYCG	1 cut(s)	459
BshFI	GGCC	1 cut(s)	286
BshNI	GGYRCC	1 cut(s)	1499
BsiEI	CGRYCG	1 cut(s)	459
BslFI	GGGAC	1 cut(s)	519
BslI	CCNNNNNNNGG	3 cut(s)	141, 216, 1370
BsmFI	GGGAC	1 cut(s)	519
BsmI	GAATGC	2 cut(s)	744, 790
BsnI	GGCC	1 cut(s)	286
Bsp1286I	GDGCHC	1 cut(s)	577
Bsp1407I	TGTACA	1 cut(s)	1212
Bsp143I	GATC	6 cut(s)	61, 190, 970, 1015, 1354, 1411
BspACI	CCGC	2 cut(s)	243, 455
BspANI	GGCC	1 cut(s)	286
BspCNI	CTCAG	4 cut(s)	577, 874, 1147, 1306
BspHI	TCATGA	3 cut(s)	265, 903, 964
BspLI	GGNNCC	1 cut(s)	1501
BspPI	GGATC	1 cut(s)	965
BspQI	GCTCTTC	1 cut(s)	955
BspT107I	GGYRCC	1 cut(s)	1499
BsrGI	TGTACA	1 cut(s)	1212
BsrI	ACTGG	1 cut(s)	1272
BssMI	GATC	6 cut(s)	61, 190, 970, 1015, 1354, 1411
Bst2UI	CCWGG	1 cut(s)	750
Bst4CI	ACNGT	3 cut(s)	510, 722, 1037
Bst6I	CTCTTC	2 cut(s)	669, 955
BstAPI	GCANNNNNTGC	2 cut(s)	615, 734
BstAUI	TGTACA	1 cut(s)	1212
BstC8I	GCNNGC	3 cut(s)	181, 607, 611
BstDEI	CTNAG	5 cut(s)	585, 861, 1155, 1293, 1369
BstENI	CCTNNNNNAGG	1 cut(s)	1368
BstF5I	GGATG	4 cut(s)	53, 866, 1129, 1360
BstHHI	GCGC	1 cut(s)	645
BstKTI	GATC	6 cut(s)	64, 193, 973, 1018, 1357, 1414
BstMBI	GATC	6 cut(s)	61, 190, 970, 1015, 1354, 1411
BstMCI	CGRYCG	1 cut(s)	459
BstMWI	GCNNNNNNNGC	5 cut(s)	550, 581, 615, 734, 1442
BstNI	CCWGG	1 cut(s)	750
BstNSI	RCATGY	1 cut(s)	1213
BstSCI	CCNGG	1 cut(s)	748
BstSLI	GKGCMC	1 cut(s)	577
BstV1I	GCAGC	6 cut(s)	284, 287, 475, 1337, 1420, 1423
BstV2I	GAAGAC	1 cut(s)	531
BstX2I	RGATCY	1 cut(s)	970
BstYI	RGATCY	1 cut(s)	970
BsuRI	GGCC	1 cut(s)	286
BtsCI	GGATG	4 cut(s)	53, 866, 1129, 1360
BtsI	GCAGTG	1 cut(s)	620
BtsIMutI	CAGTG	3 cut(s)	515, 620, 1152
Cac8I	GCNNGC	3 cut(s)	181, 607, 611
CciI	TCATGA	3 cut(s)	265, 903, 964
CfoI	GCGC	1 cut(s)	645
Cfr13I	GGNCC	1 cut(s)	119
CseI	GACGC	1 cut(s)	707
Csp6I	GTAC	3 cut(s)	936, 1213, 1500
CviAII	CATG	7 cut(s)	266, 904, 965, 1096, 1210, 1390, 1409
CviQI	GTAC	3 cut(s)	936, 1213, 1500
DdeI	CTNAG	5 cut(s)	585, 861, 1155, 1293, 1369
DpnI	GATC	6 cut(s)	63, 192, 972, 1017, 1356, 1413
DpnII	GATC	6 cut(s)	61, 190, 970, 1015, 1354, 1411
Eam1104I	CTCTTC	2 cut(s)	669, 955
EarI	CTCTTC	2 cut(s)	669, 955
Eco32I	GATATC	1 cut(s)	652
Eco47I	GGWCC	1 cut(s)	119
Eco57I	CTGAAG	3 cut(s)	693, 729, 852
EcoNI	CCTNNNNNAGG	1 cut(s)	1368
EcoO109I	RGGNCCY	1 cut(s)	119
EcoRI	GAATTC	1 cut(s)	805
EcoRII	CCWGG	1 cut(s)	748
EcoRV	GATATC	1 cut(s)	652
FaeI	CATG	7 cut(s)	269, 907, 968, 1099, 1213, 1393, 1412
FaqI	GGGAC	1 cut(s)	519
FatI	CATG	7 cut(s)	265, 903, 964, 1095, 1209, 1389, 1408
FbaI	TGATCA	3 cut(s)	1015, 1354, 1411
Fnu4HI	GCNGC	6 cut(s)	273, 276, 489, 1326, 1434, 1437
FokI	GGATG	4 cut(s)	60, 853, 1116, 1347
Fsp4HI	GCNGC	6 cut(s)	273, 276, 489, 1326, 1434, 1437
FspBI	CTAG	3 cut(s)	288, 933, 1029
GlaI	GCGC	1 cut(s)	644
GluI	GCNGC	6 cut(s)	273, 276, 489, 1326, 1434, 1437
HaeIII	GGCC	1 cut(s)	286
HgaI	GACGC	1 cut(s)	707
HhaI	GCGC	1 cut(s)	645
Hin1II	CATG	7 cut(s)	269, 907, 968, 1099, 1213, 1393, 1412
Hin6I	GCGC	1 cut(s)	643
HinP1I	GCGC	1 cut(s)	643
HincII	GTYRAC	1 cut(s)	697
HindII	GTYRAC	1 cut(s)	697
HindIII	AAGCTT	1 cut(s)	328
HinfI	GANTC	3 cut(s)	561, 1043, 1064
HphI	GGTGA	3 cut(s)	71, 559, 1102
Hpy166II	GTNNAC	3 cut(s)	513, 697, 1023
Hpy188I	TCNGA	7 cut(s)	198, 419, 439, 461, 566, 1015, 1303
Hpy188III	TCNNGA	6 cut(s)	266, 386, 655, 889, 904, 965
Hpy8I	GTNNAC	3 cut(s)	513, 697, 1023
HpyAV	CCTTC	7 cut(s)	193, 419, 423, 594, 827, 1152, 1448
HpyCH4III	ACNGT	3 cut(s)	510, 722, 1037
HpyCH4V	TGCA	7 cut(s)	179, 254, 450, 618, 737, 788, 1099
HpyF10VI	GCNNNNNNNGC	5 cut(s)	550, 581, 615, 734, 1442
HpyF3I	CTNAG	5 cut(s)	585, 861, 1155, 1293, 1369
Hsp92II	CATG	7 cut(s)	269, 907, 968, 1099, 1213, 1393, 1412
HspAI	GCGC	1 cut(s)	643
KpnI	GGTACC	1 cut(s)	1503
Ksp22I	TGATCA	3 cut(s)	1015, 1354, 1411
Kzo9I	GATC	6 cut(s)	61, 190, 970, 1015, 1354, 1411
LguI	GCTCTTC	1 cut(s)	955
LmnI	GCTCC	2 cut(s)	891, 1322
Lsp1109I	GCAGC	6 cut(s)	284, 287, 475, 1337, 1420, 1423
MaeI	CTAG	3 cut(s)	288, 933, 1029
MaeIII	GTNAC	2 cut(s)	1000, 1404
MalI	GATC	6 cut(s)	63, 192, 972, 1017, 1356, 1413
MboI	GATC	6 cut(s)	61, 190, 970, 1015, 1354, 1411
MboII	GAAGA	8 cut(s)	434, 536, 686, 765, 942, 980, 1099, 1418
MflI	RGATCY	1 cut(s)	970
MhlI	GDGCHC	1 cut(s)	577
MlyI	GAGTC	2 cut(s)	570, 1058
MmeI	TCCRAC	4 cut(s)	331, 439, 694, 1147
MroXI	GAANNNNTTC	1 cut(s)	433
MseI	TTAA	4 cut(s)	482, 497, 1236, 1316
MslI	CAYNNNNRTG	2 cut(s)	783, 1388
MspR9I	CCNGG	1 cut(s)	750
Mva1269I	GAATGC	2 cut(s)	744, 790
MvaI	CCWGG	1 cut(s)	750
MwoI	GCNNNNNNNGC	5 cut(s)	550, 581, 615, 734, 1442
NdeII	GATC	6 cut(s)	61, 190, 970, 1015, 1354, 1411
NlaIII	CATG	7 cut(s)	269, 907, 968, 1099, 1213, 1393, 1412
NlaIV	GGNNCC	1 cut(s)	1501
NmuCI	GTSAC	2 cut(s)	1000, 1404
NspI	RCATGY	1 cut(s)	1213
PagI	TCATGA	3 cut(s)	265, 903, 964
PciI	ACATGT	1 cut(s)	1209
PciSI	GCTCTTC	1 cut(s)	955
PctI	GAATGC	2 cut(s)	744, 790
PdmI	GAANNNNTTC	1 cut(s)	433
PfeI	GAWTC	1 cut(s)	1043
PfoI	TCCNGGA	1 cut(s)	748
PkrI	GCNGC	6 cut(s)	274, 277, 490, 1327, 1435, 1438
PleI	GAGTC	2 cut(s)	569, 1058
PpsI	GAGTC	2 cut(s)	569, 1058
PpuMI	RGGWCCY	1 cut(s)	119
PscI	ACATGT	1 cut(s)	1209
PshBI	ATTAAT	1 cut(s)	1236
PsiI	TTATAA	1 cut(s)	1344
Psp5II	RGGWCCY	1 cut(s)	119
Psp6I	CCWGG	1 cut(s)	748
PspGI	CCWGG	1 cut(s)	748
PspN4I	GGNNCC	1 cut(s)	1501
PspPI	GGNCC	1 cut(s)	119
PspPPI	RGGWCCY	1 cut(s)	119
PsuI	RGATCY	1 cut(s)	970
RsaI	GTAC	3 cut(s)	937, 1214, 1501
RsaNI	GTAC	3 cut(s)	936, 1213, 1500
RseI	CAYNNNNRTG	2 cut(s)	783, 1388
SapI	GCTCTTC	1 cut(s)	955
SaqAI	TTAA	4 cut(s)	482, 497, 1236, 1316
SatI	GCNGC	6 cut(s)	273, 276, 489, 1326, 1434, 1437
Sau3AI	GATC	6 cut(s)	61, 190, 970, 1015, 1354, 1411
Sau96I	GGNCC	1 cut(s)	119
SchI	GAGTC	2 cut(s)	570, 1058
ScrFI	CCNGG	1 cut(s)	750
SduI	GDGCHC	1 cut(s)	577
SinI	GGWCC	1 cut(s)	119
SmiMI	CAYNNNNRTG	2 cut(s)	783, 1388
SmlI	CTYRAG	1 cut(s)	1494
SmoI	CTYRAG	1 cut(s)	1494
SsiI	CCGC	2 cut(s)	243, 455
SspI	AATATT	2 cut(s)	925, 1397
SspMI	CTAG	3 cut(s)	288, 933, 1029
StyD4I	CCNGG	1 cut(s)	748
TaaI	ACNGT	3 cut(s)	510, 722, 1037
TaqI	TCGA	1 cut(s)	977
TatI	WGTACW	1 cut(s)	1212
TfiI	GAWTC	1 cut(s)	1043
Tru1I	TTAA	4 cut(s)	482, 497, 1236, 1316
Tru9I	TTAA	4 cut(s)	482, 497, 1236, 1316
TscAI	CASTG	3 cut(s)	515, 620, 1159
TseFI	GTSAC	2 cut(s)	1000, 1404
TseI	GCWGC	6 cut(s)	272, 275, 488, 1325, 1433, 1436
Tsp45I	GTSAC	2 cut(s)	1000, 1404
TspDTI	ATGAA	5 cut(s)	354, 920, 981, 1084, 1323
TspRI	CASTG	3 cut(s)	515, 620, 1159
VpaK11BI	GGWCC	1 cut(s)	119
VspI	ATTAAT	1 cut(s)	1236
XagI	CCTNNNNNAGG	1 cut(s)	1368
XapI	RAATTY	4 cut(s)	341, 805, 1054, 1102
XceI	RCATGY	1 cut(s)	1213
XmnI	GAANNNNTTC	1 cut(s)	433
XspI	CTAG	3 cut(s)	288, 933, 1029

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.