AT5G58850
MYB Family

transcription regulator recruiting activity

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
5
OG0004958
Physical Location & Seq
Forward (+)
23763945 .. 23765556
1612 bp
Loading structure...
UTR
Exon/CDS
Intron
AT5G58850.1

Sequence Viewer

Length: 1293 bp
ATGGAAGACCGACGCCTTGTCCATGGAGCTGCGCCGCCGTTGACAGCCGTGGAGAGATTCTTATACGGTCAAAAGAATGATGCCTTGTGTTCCAAGAAACAAGAGAGTTCTAGAGACCAACCGATCGTGAAGACAAAAATATCGATTGAGACTAGAAGCGACAACAAAGAGAACACAACGTTTGGGCCGACGAGGGAGAAACACTTGGTCCTTAATGGCGGCAACAGAAACCCTACTGGAGAAGTGGTCGCTAGAAGTGCAGCCAGAGATTATCAAAACAGTACGAAGAAACGATCATCCAAGAACCTCATCAAAGGGCAATGGACGGCGGAAGAAGACAGGAAGTTGATAAGGTTGGTGAGGCAACATGGGGAGAGGAAATGGGCAATGATATCGGAGAAACTTGAGGGAAGAGCAGGCAAACAATGTCGTGAGAGATGGCATAATCATCTCCGTCCTGATATTAAGAAAGATGGATGGAGTGAAGAAGAAGAGAGGGTTCTTGTGGAATCACACATGAGAATCGGGAACAAATGGGCAGAGATCGCTAAACTCATACCAGGACGGACTGAGAATTCTATCAAGAACCATTGGAATGCGACCAAGAGACGTCAAAATTCAAAACGCAAACACAAACGCGAATCAAACGCTGATAACAATGATAGAGATGCCTCTCCATCAGCTAAAAGACCATGCATTCTCCAAGACTACATCAAAAGTATCGAGAGAAATAACATTAACAAGGACAATGACGAGAAGAAGAATGAGAACACCATCAGTGTTATTTCTACACCTAATCTTGATCAGATCTATTCTGATGGTGATTCCGCGTCGTCCATCCTTGGCGGTCCATATGACGAAGAGCTAGATTACTTTCAAAATATCTTTGCAAACCATCCGATTTCTCTTGAGAATTTAGGTTTGAGCCAAACTTCGGATGAGGTAACTCAGTCTTCATCATCTGGGTTCATGATCAAGAACCCTAACCCTAACTTGCACGACAGTGTTGGAATTCATCATCAAGAGGCAACGATCACAGCTCCGGCGAATACACCCCACCTTGCGTCTGATATCTACTTATCTTATTTATTGAACGGTACGACGTCTTCATACTCCGACACTCATTTTCCGTCTTCCTCATCTTCCACGTCATCCACCACCGTAGAGCATGGAGGCCACAACGAGTTTCTTGAGCCTCAAGCTAACTCTACAAGTGAAAGAAGAGAAATGGATCTGATAGAGATGCTCTCTGGTTCTATTCAAGGTAGCAACATCTGCTTCCCGTTGGTCTAG

Protein Analysis

430

Amino Acids

48.51

Weight (kDa)

7.75

Isoelectric Point (pI)

53.63

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Myb_DNA-binding PF00249 105 - 151 1.1e-16 Myb-like DNA-binding domain
Myb_DNA-bind_6 PF13921 108 - 166 6.2e-19 Myb-like DNA-binding domain
Myb_DNA-binding PF00249 158 - 199 5.8e-14 Myb-like DNA-binding domain
Myb_DNA-bind_6 PF13921 160 - 204 1e-08 Myb-like DNA-binding domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 2 cut(s) 613, 1106
AccII CGCG 2 cut(s) 639, 830
AciI CCGC 5 cut(s) 35, 219, 329, 828, 846
AclI AACGTT 1 cut(s) 179
AclWI GGATC 1 cut(s) 1239
AcsI RAATTY 4 cut(s) 574, 616, 913, 1011
AcyI GRCGYC 3 cut(s) 13, 610, 1103
AfaI GTAC 2 cut(s) 283, 1099
AfiI CCNNNNNNNGG 1 cut(s) 934
AgsI TTSAA 4 cut(s) 621, 878, 1093, 1262
AhdI GACNNNNNGTC 1 cut(s) 17
AjiI CACGTC 1 cut(s) 1149
AjnI CCWGG 1 cut(s) 559
AleI CACNNNNGTG 1 cut(s) 1002
AluBI AGCT 5 cut(s) 29, 683, 865, 1040, 1202
AluI AGCT 5 cut(s) 29, 683, 865, 1040, 1202
Alw26I GTCTC 3 cut(s) 108, 143, 601
AlwI GGATC 1 cut(s) 1239
AoxI GGCC 2 cut(s) 185, 1174
ApeKI GCWGC 2 cut(s) 29, 260
ApoI RAATTY 4 cut(s) 574, 616, 913, 1011
AspLEI GCGC 1 cut(s) 34
AspS9I GGNCC 3 cut(s) 185, 208, 848
AsuHPI GGTGA 2 cut(s) 370, 833
AvaII GGWCC 2 cut(s) 208, 848
BarI GAAGNNNNNNTAC 2 cut(s) 1090, 1122
BbsI GAAGAC 6 cut(s) 12, 137, 342, 945, 1098, 1125
BbvI GCAGC 2 cut(s) 16, 272
BccI CCATC 8 cut(s) 432, 467, 471, 685, 782, 812, 845, 903
BceAI ACGGC 3 cut(s) 22, 32, 342
BcgI CGANNNNNNTGC 2 cut(s) 375, 409
BciT130I CCWGG 1 cut(s) 561
BclI TGATCA 2 cut(s) 802, 972
BcoDI GTCTC 3 cut(s) 108, 143, 601
BfaI CTAG 5 cut(s) 111, 153, 252, 866, 1291
BglII AGATCT 1 cut(s) 807
BisI GCNGC 4 cut(s) 30, 35, 220, 261
BlsI GCNGC 4 cut(s) 31, 36, 221, 262
Bme1390I CCNGG 1 cut(s) 561
Bme18I GGWCC 2 cut(s) 208, 848
BmeRI GACNNNNNGTC 1 cut(s) 17
BmgBI CACGTC 1 cut(s) 1149
BmgT120I GGNCC 3 cut(s) 185, 208, 848
BmrFI CCNGG 1 cut(s) 561
BmsI GCATC 3 cut(s) 70, 658, 1233
BpiI GAAGAC 6 cut(s) 12, 137, 342, 945, 1098, 1125
BplI GAGNNNNNCTC 2 cut(s) 1232, 1264
BpmI CTGGAG 1 cut(s) 258
BpuEI CTTGAG 4 cut(s) 425, 929, 1182, 1211
Bsa29I ATCGAT 1 cut(s) 143
BsaHI GRCGYC 3 cut(s) 13, 610, 1103
BsaI GGTCTC 1 cut(s) 108
BsaJI CCNNGG 3 cut(s) 22, 48, 841
BsaXI ACNNNNNCTCC 2 cut(s) 231, 261
Bsc4I CCNNNNNNNGG 1 cut(s) 934
Bse1I ACTGG 1 cut(s) 241
Bse3DI GCAATG 2 cut(s) 326, 393
BseBI CCWGG 1 cut(s) 561
BseCI ATCGAT 1 cut(s) 143
BseDI CCNNGG 3 cut(s) 22, 48, 841
BseGI GGATG 6 cut(s) 296, 482, 837, 895, 943, 1151
BseLI CCNNNNNNNGG 1 cut(s) 934
BseMI GCAATG 2 cut(s) 326, 393
BseMII CTCAG 2 cut(s) 561, 962
BseNI ACTGG 1 cut(s) 241
BseXI GCAGC 2 cut(s) 16, 272
BsgI GTGCAG 1 cut(s) 279
Bsh1236I CGCG 2 cut(s) 639, 830
Bsh1285I CGRYCG 1 cut(s) 126
BshFI GGCC 2 cut(s) 187, 1176
BshVI ATCGAT 1 cut(s) 143
BsiEI CGRYCG 1 cut(s) 126
BsiSI CCGG 1 cut(s) 1043
BslI CCNNNNNNNGG 1 cut(s) 934
BsmAI GTCTC 3 cut(s) 108, 143, 601
BsmBI CGTCTC 1 cut(s) 601
BsmI GAATGC 2 cut(s) 601, 696
BsnI GGCC 2 cut(s) 187, 1176
Bso31I GGTCTC 1 cut(s) 108
Bsp143I GATC 8 cut(s) 123, 293, 543, 802, 807, 972, 1032, 1231
Bsp19I CCATGG 1 cut(s) 22
BspACI CCGC 5 cut(s) 35, 219, 329, 828, 846
BspANI GGCC 2 cut(s) 187, 1176
BspCNI CTCAG 2 cut(s) 562, 961
BspDI ATCGAT 1 cut(s) 143
BspFNI CGCG 2 cut(s) 639, 830
BspHI TCATGA 1 cut(s) 969
BspPI GGATC 1 cut(s) 1239
BspQI GCTCTTC 2 cut(s) 406, 855
BspTNI GGTCTC 1 cut(s) 108
BsrDI GCAATG 2 cut(s) 326, 393
BsrI ACTGG 1 cut(s) 241
BssECI CCNNGG 3 cut(s) 22, 48, 841
BssMI GATC 8 cut(s) 123, 293, 543, 802, 807, 972, 1032, 1231
BssNI GRCGYC 3 cut(s) 13, 610, 1103
BssT1I CCWWGG 2 cut(s) 22, 841
Bst2UI CCWGG 1 cut(s) 561
Bst4CI ACNGT 5 cut(s) 68, 281, 1004, 1097, 1162
Bst6I CTCTTC 4 cut(s) 406, 486, 855, 1216
BstACI GRCGYC 3 cut(s) 13, 610, 1103
BstAPI GCANNNNNTGC 1 cut(s) 1275
BstC8I GCNNGC 1 cut(s) 418
BstDEI CTNAG 2 cut(s) 570, 948
BstDSI CCRYGG 2 cut(s) 22, 48
BstF5I GGATG 6 cut(s) 296, 482, 837, 895, 943, 1151
BstFNI CGCG 2 cut(s) 639, 830
BstHHI GCGC 1 cut(s) 34
BstKTI GATC 8 cut(s) 126, 296, 546, 805, 810, 975, 1035, 1234
BstMAI GTCTC 3 cut(s) 108, 143, 601
BstMBI GATC 8 cut(s) 123, 293, 543, 802, 807, 972, 1032, 1231
BstMCI CGRYCG 1 cut(s) 126
BstMWI GCNNNNNNNGC 3 cut(s) 257, 545, 1275
BstNI CCWGG 1 cut(s) 561
BstSCI CCNGG 1 cut(s) 559
BstUI CGCG 2 cut(s) 639, 830
BstV1I GCAGC 2 cut(s) 16, 272
BstV2I GAAGAC 6 cut(s) 12, 137, 342, 945, 1098, 1125
BstX2I RGATCY 2 cut(s) 807, 1231
BstYI RGATCY 2 cut(s) 807, 1231
Bsu15I ATCGAT 1 cut(s) 143
BsuRI GGCC 2 cut(s) 187, 1176
BsuTUI ATCGAT 1 cut(s) 143
BtgI CCRYGG 2 cut(s) 22, 48
BtrI CACGTC 1 cut(s) 1149
BtsCI GGATG 6 cut(s) 296, 482, 837, 895, 943, 1151
BtsIMutI CAGTG 2 cut(s) 784, 1009
Cac8I GCNNGC 1 cut(s) 418
CciI TCATGA 1 cut(s) 969
CfoI GCGC 1 cut(s) 34
Cfr13I GGNCC 3 cut(s) 185, 208, 848
ClaI ATCGAT 1 cut(s) 143
CseI GACGC 3 cut(s) 21, 819, 1053
Csp6I GTAC 2 cut(s) 282, 1098
CviAII CATG 6 cut(s) 23, 368, 517, 693, 970, 1169
CviQI GTAC 2 cut(s) 282, 1098
DdeI CTNAG 2 cut(s) 570, 948
DpnI GATC 8 cut(s) 125, 295, 545, 804, 809, 974, 1034, 1233
DpnII GATC 8 cut(s) 123, 293, 543, 802, 807, 972, 1032, 1231
DriI GACNNNNNGTC 1 cut(s) 17
Eam1104I CTCTTC 4 cut(s) 406, 486, 855, 1216
Eam1105I GACNNNNNGTC 1 cut(s) 17
EarI CTCTTC 4 cut(s) 406, 486, 855, 1216
EciI GGCGGA 1 cut(s) 344
Eco130I CCWWGG 2 cut(s) 22, 841
Eco31I GGTCTC 1 cut(s) 108
Eco32I GATATC 2 cut(s) 393, 1072
Eco47I GGWCC 2 cut(s) 208, 848
EcoRI GAATTC 2 cut(s) 574, 1011
EcoRII CCWGG 1 cut(s) 559
EcoRV GATATC 2 cut(s) 393, 1072
EcoT14I CCWWGG 2 cut(s) 22, 841
EcoT22I ATGCAT 1 cut(s) 698
ErhI CCWWGG 2 cut(s) 22, 841
Esp3I CGTCTC 1 cut(s) 601
FaeI CATG 6 cut(s) 26, 371, 520, 696, 973, 1172
FatI CATG 6 cut(s) 22, 367, 516, 692, 969, 1168
FauNDI CATATG 1 cut(s) 853
FbaI TGATCA 2 cut(s) 802, 972
Fnu4HI GCNGC 4 cut(s) 30, 35, 220, 261
FokI GGATG 6 cut(s) 283, 489, 824, 882, 950, 1138
Fsp4HI GCNGC 4 cut(s) 30, 35, 220, 261
FspBI CTAG 5 cut(s) 111, 153, 252, 866, 1291
GlaI GCGC 1 cut(s) 33
GluI GCNGC 4 cut(s) 30, 35, 220, 261
GsuI CTGGAG 1 cut(s) 258
HaeIII GGCC 2 cut(s) 187, 1176
HapII CCGG 1 cut(s) 1043
HgaI GACGC 3 cut(s) 21, 819, 1053
HhaI GCGC 1 cut(s) 34
Hin1I GRCGYC 3 cut(s) 13, 610, 1103
Hin1II CATG 6 cut(s) 26, 371, 520, 696, 973, 1172
Hin6I GCGC 1 cut(s) 32
HinP1I GCGC 1 cut(s) 32
HincII GTYRAC 1 cut(s) 42
HindII GTYRAC 1 cut(s) 42
HinfI GANTC 5 cut(s) 57, 509, 522, 641, 824
HpaII CCGG 1 cut(s) 1043
HphI GGTGA 2 cut(s) 370, 833
Hpy166II GTNNAC 1 cut(s) 42
Hpy188I TCNGA 8 cut(s) 397, 807, 817, 900, 937, 1069, 1117, 1236
Hpy8I GTNNAC 1 cut(s) 42
Hpy99I CGWCG 4 cut(s) 15, 193, 835, 1105
HpyCH4III ACNGT 5 cut(s) 68, 281, 1004, 1097, 1162
HpyCH4IV ACGT 4 cut(s) 179, 610, 1103, 1148
HpyCH4V TGCA 4 cut(s) 260, 696, 890, 997
HpyF10VI GCNNNNNNNGC 3 cut(s) 257, 545, 1275
HpyF3I CTNAG 2 cut(s) 570, 948
HpySE526I ACGT 4 cut(s) 179, 610, 1103, 1148
Hsp92I GRCGYC 3 cut(s) 13, 610, 1103
Hsp92II CATG 6 cut(s) 26, 371, 520, 696, 973, 1172
HspAI GCGC 1 cut(s) 32
Ksp22I TGATCA 2 cut(s) 802, 972
Kzo9I GATC 8 cut(s) 123, 293, 543, 802, 807, 972, 1032, 1231
LguI GCTCTTC 2 cut(s) 406, 855
LmnI GCTCC 2 cut(s) 26, 1045
Lsp1109I GCAGC 2 cut(s) 16, 272
LweI GCATC 3 cut(s) 70, 658, 1233
MaeI CTAG 5 cut(s) 111, 153, 252, 866, 1291
MaeII ACGT 4 cut(s) 179, 610, 1103, 1148
MaeIII GTNAC 1 cut(s) 943
MalI GATC 8 cut(s) 125, 295, 545, 804, 809, 974, 1034, 1233
MboI GATC 8 cut(s) 123, 293, 543, 802, 807, 972, 1032, 1231
MflI RGATCY 2 cut(s) 807, 1231
MluCI AATT 4 cut(s) 574, 616, 913, 1011
MmeI TCCRAC 2 cut(s) 988, 1140
Mph1103I ATGCAT 1 cut(s) 698
MseI TTAA 3 cut(s) 213, 465, 738
MslI CAYNNNNRTG 2 cut(s) 594, 1002
MspI CCGG 1 cut(s) 1043
MspR9I CCNGG 1 cut(s) 561
Mva1269I GAATGC 2 cut(s) 601, 696
MvaI CCWGG 1 cut(s) 561
MvnI CGCG 2 cut(s) 639, 830
MwoI GCNNNNNNNGC 3 cut(s) 257, 545, 1275
NcoI CCATGG 1 cut(s) 22
NdeI CATATG 1 cut(s) 853
NdeII GATC 8 cut(s) 123, 293, 543, 802, 807, 972, 1032, 1231
NlaIII CATG 6 cut(s) 26, 371, 520, 696, 973, 1172
NsiI ATGCAT 1 cut(s) 698
OliI CACNNNNGTG 1 cut(s) 1002
PagI TCATGA 1 cut(s) 969
PciSI GCTCTTC 2 cut(s) 406, 855
PcsI WCGNNNNNNNCGW 1 cut(s) 185
PctI GAATGC 2 cut(s) 601, 696
PfeI GAWTC 5 cut(s) 57, 509, 522, 641, 824
PkrI GCNGC 4 cut(s) 31, 36, 221, 262
Ple19I CGATCG 1 cut(s) 126
Psp1406I AACGTT 1 cut(s) 179
Psp6I CCWGG 1 cut(s) 559
PspGI CCWGG 1 cut(s) 559
PspPI GGNCC 3 cut(s) 185, 208, 848
PsuI RGATCY 2 cut(s) 807, 1231
PvuI CGATCG 1 cut(s) 126
RsaI GTAC 2 cut(s) 283, 1099
RsaNI GTAC 2 cut(s) 282, 1098
RseI CAYNNNNRTG 2 cut(s) 594, 1002
SapI GCTCTTC 2 cut(s) 406, 855
SaqAI TTAA 3 cut(s) 213, 465, 738
SatI GCNGC 4 cut(s) 30, 35, 220, 261
Sau3AI GATC 8 cut(s) 123, 293, 543, 802, 807, 972, 1032, 1231
Sau96I GGNCC 3 cut(s) 185, 208, 848
ScrFI CCNGG 1 cut(s) 561
SfaNI GCATC 3 cut(s) 70, 658, 1233
SinI GGWCC 2 cut(s) 208, 848
SmiMI CAYNNNNRTG 2 cut(s) 594, 1002
SmlI CTYRAG 4 cut(s) 404, 908, 1190, 1197
SmoI CTYRAG 4 cut(s) 404, 908, 1190, 1197
Sse9I AATT 4 cut(s) 574, 616, 913, 1011
SsiI CCGC 5 cut(s) 35, 219, 329, 828, 846
SspMI CTAG 5 cut(s) 111, 153, 252, 866, 1291
StyD4I CCNGG 1 cut(s) 559
StyI CCWWGG 2 cut(s) 22, 841
TaaI ACNGT 5 cut(s) 68, 281, 1004, 1097, 1162
TaiI ACGT 4 cut(s) 182, 613, 1106, 1151
TaqI TCGA 2 cut(s) 143, 723
TaqII GACCGA 1 cut(s) 24
TasI AATT 4 cut(s) 574, 616, 913, 1011
TauI GCSGC 2 cut(s) 37, 222
TfiI GAWTC 5 cut(s) 57, 509, 522, 641, 824
Tru1I TTAA 3 cut(s) 213, 465, 738
Tru9I TTAA 3 cut(s) 213, 465, 738
TscAI CASTG 2 cut(s) 784, 1009
TseI GCWGC 2 cut(s) 29, 260
TspDTI ATGAA 4 cut(s) 945, 958, 1004, 1098
TspGWI ACGGA 3 cut(s) 443, 580, 1119
TspRI CASTG 2 cut(s) 784, 1009
VpaK11BI GGWCC 2 cut(s) 208, 848
XapI RAATTY 4 cut(s) 574, 616, 913, 1011
XbaI TCTAGA 1 cut(s) 110
XspI CTAG 5 cut(s) 111, 153, 252, 866, 1291
ZraI GACGTC 2 cut(s) 611, 1104
Zsp2I ATGCAT 1 cut(s) 698
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.