RLG00000036016

GDP-mannose transporter

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr7
OG0008024
Physical Location & Seq
Forward (+)
74926648 .. 74929379
2732 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000036016

Sequence Viewer

Length: 1251 bp
ATGTCGTCTGATTTCAAGTTAGAGGGAGTTAAAGGCCATGAAAATGAGGACCCAGAAGTTGGTTCTCCAAATGGAATACATAATATTCTTGCGGAGCGAAGAACTATGACTCTCAGTGACAGGTTGTTCAGAGGGAATCGAGCAGTGCATGGTGACACCATCTCTTTTAGTCCAATTGATGGAAATGAAAAGCATGGACATGGGTCAGCAAAGAAATCTGGACCTCTGTTGTCTGGGACAGCATATTGCATTTCATCGTGCAGCATGATATTGCTGAATAAAGTTGTTCTATCAAGTTACAACTTCAATGCAGGAGTATCATTGATGTTTTATCAAAATTTGATAAGTACTGTAATTGTTGTATTCTTGGGCTTCTCTGGAGTTGTTACTGTGGAAAAGCTCAATTGGAAACTGATTAAGGTCTGGATCCCTGTTAATGTAATCTTCATCGGCATGCTTGTATCAGGCATGTATAGTTTGAAATACGTAAATATTGCAATGGTGACCATTCTGAAGAATGTGACAAATATTTTAACAGCACTGGGAGAATTATATATGTTCCGGAAACACCAGAATCAGAAAGTGTGGACTGCCATGTTTCTAATGATTATCTCTGCTATCAGCAGTGGCATTACAGATATCTCCTTTGATACTGTAGGTTATGCTTGGCAATTTTCAAATTGCATACTAACAGCAAGCTACTCGCTCACTCTACGGCGAGTCATGGATGAAGCAAAAAAGTACACAAGATCCGGATCTCTAAATGAAGTTTCAATGGTCTTGCTGAATAATTTGCTATCTCTACCTTTTGCTGCCTTCTTGATTATTCTGTTTGATGAATGGGAATATGTGATTAATGCGGATGTAGTCAAGTTGCCAGTGTTTTGGGTTGTTGCAACAGCTAGTGGATTGCTTGGACTTTCTATTAGCTTTACTTCCATGTGGTTTCTACATCAAACTGGCCCAACCACCTATAGTCTGGTGGGTTCCTTAAACAAGATTCCTCTCTCTCTTGCCGGTTTAGTCCTCTTCAGGGGCAAAAATGACTTGATTCAGAAAGAAATTGTTAGGATGAAGATGAAGGGAATCGGTTCCATAGATGTAACCTTCTCATGGCAAGACAAAAATTGCTGCACAAAACAGTTTCCAGGAACTGGAAACTTGGTTTCTTTGCTCTTGGTTGAAGAAGGCCAAACGTTTTCTTCCTCTGCAAACATACAGCTTCAAGCCACCACTGAGCTACAGGAGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
TPT

Protein Analysis

417

Amino Acids

46.0

Weight (kDa)

8.66

Isoelectric Point (pI)

30.53

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
TPT PF03151 81 - 346 6.4e-11 Triose-phosphate Transporter family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 3 cut(s) 59, 179, 1154
AccIII TCCGGA 2 cut(s) 561, 752
AciI CCGC 2 cut(s) 92, 860
AclI AACGTT 1 cut(s) 1196
AclWI GGATC 4 cut(s) 421, 434, 744, 763
AcsI RAATTY 1 cut(s) 337
AcuI CTGAAG 2 cut(s) 533, 1015
AfaI GTAC 2 cut(s) 349, 743
AfiI CCNNNNNNNGG 5 cut(s) 59, 179, 1033, 1113, 1154
AgsI TTSAA 7 cut(s) 16, 307, 481, 678, 774, 1184, 1226
AjnI CCWGG 1 cut(s) 1147
AluBI AGCT 6 cut(s) 400, 699, 902, 930, 1222, 1240
AluI AGCT 6 cut(s) 400, 699, 902, 930, 1222, 1240
AlwI GGATC 4 cut(s) 421, 434, 744, 763
AlwNI CAGNNNCTG 1 cut(s) 1154
Aor13HI TCCGGA 2 cut(s) 561, 752
AoxI GGCC 3 cut(s) 34, 961, 1189
ApeKI GCWGC 3 cut(s) 261, 812, 1131
ApoI RAATTY 1 cut(s) 337
AseI ATTAAT 1 cut(s) 855
Asp700I GAANNNNTTC 1 cut(s) 1090
AspS9I GGNCC 3 cut(s) 49, 221, 962
AsuHPI GGTGA 2 cut(s) 164, 514
AvaII GGWCC 2 cut(s) 49, 221
BamHI GGATCC 1 cut(s) 426
BbvI GCAGC 3 cut(s) 273, 799, 1118
BccI CCATC 2 cut(s) 167, 173
BceAI ACGGC 1 cut(s) 731
BcgI CGANNNNNNTGC 2 cut(s) 684, 718
BciT130I CCWGG 1 cut(s) 1149
BfaI CTAG 1 cut(s) 903
BfmI CTRYAG 3 cut(s) 654, 973, 1241
BisI GCNGC 3 cut(s) 262, 813, 1132
BlsI GCNGC 3 cut(s) 263, 814, 1133
BmcAI AGTACT 1 cut(s) 349
Bme1390I CCNGG 1 cut(s) 1149
Bme18I GGWCC 2 cut(s) 49, 221
BmgT120I GGNCC 3 cut(s) 49, 221, 962
BmiI GGNNCC 4 cut(s) 51, 428, 988, 1093
BmrFI CCNGG 1 cut(s) 1149
BmrI ACTGGG 1 cut(s) 551
BmuI ACTGGG 1 cut(s) 551
BoxI GACNNNNGTC 1 cut(s) 202
BpmI CTGGAG 1 cut(s) 399
BsaAI YACGTR 1 cut(s) 487
BsaBI GATNNNNATC 1 cut(s) 754
BsaWI WCCGGW 2 cut(s) 561, 752
Bsc4I CCNNNNNNNGG 5 cut(s) 59, 179, 1033, 1113, 1154
Bse118I RCCGGY 1 cut(s) 1016
Bse1I ACTGG 4 cut(s) 546, 878, 964, 1159
Bse3DI GCAATG 1 cut(s) 504
Bse8I GATNNNNATC 1 cut(s) 754
BseAI TCCGGA 2 cut(s) 561, 752
BseBI CCWGG 1 cut(s) 1149
BseGI GGATG 3 cut(s) 733, 868, 1077
BseJI GATNNNNATC 1 cut(s) 754
BseLI CCNNNNNNNGG 5 cut(s) 59, 179, 1033, 1113, 1154
BseMI GCAATG 1 cut(s) 504
BseMII CTCAG 2 cut(s) 127, 1227
BseNI ACTGG 4 cut(s) 546, 878, 964, 1159
BseXI GCAGC 3 cut(s) 273, 799, 1118
BsgI GTGCAG 2 cut(s) 280, 1117
BshFI GGCC 3 cut(s) 36, 963, 1191
BsiSI CCGG 3 cut(s) 562, 753, 1017
BslFI GGGAC 1 cut(s) 250
BslI CCNNNNNNNGG 5 cut(s) 59, 179, 1033, 1113, 1154
BsmFI GGGAC 1 cut(s) 250
BsnI GGCC 3 cut(s) 36, 963, 1191
Bsp13I TCCGGA 2 cut(s) 561, 752
Bsp143I GATC 3 cut(s) 426, 749, 755
BspACI CCGC 2 cut(s) 92, 860
BspANI GGCC 3 cut(s) 36, 963, 1191
BspCNI CTCAG 2 cut(s) 126, 1228
BspEI TCCGGA 2 cut(s) 561, 752
BspLI GGNNCC 4 cut(s) 51, 428, 988, 1093
BspPI GGATC 4 cut(s) 421, 434, 744, 763
BsrDI GCAATG 1 cut(s) 504
BsrFI RCCGGY 1 cut(s) 1016
BsrI ACTGG 4 cut(s) 546, 878, 964, 1159
BssAI RCCGGY 1 cut(s) 1016
BssMI GATC 3 cut(s) 426, 749, 755
Bst2UI CCWGG 1 cut(s) 1149
Bst4CI ACNGT 4 cut(s) 352, 391, 655, 1143
Bst6I CTCTTC 1 cut(s) 1034
BstBAI YACGTR 1 cut(s) 487
BstC8I GCNNGC 2 cut(s) 455, 697
BstDEI CTNAG 2 cut(s) 113, 1236
BstEII GGTNACC 1 cut(s) 502
BstF5I GGATG 3 cut(s) 733, 868, 1077
BstKTI GATC 3 cut(s) 429, 752, 758
BstMBI GATC 3 cut(s) 426, 749, 755
BstNI CCWGG 1 cut(s) 1149
BstNSI RCATGY 2 cut(s) 457, 472
BstPAI GACNNNNGTC 1 cut(s) 202
BstPI GGTNACC 1 cut(s) 502
BstSCI CCNGG 1 cut(s) 1147
BstSFI CTRYAG 3 cut(s) 654, 973, 1241
BstSNI TACGTA 1 cut(s) 487
BstV1I GCAGC 3 cut(s) 273, 799, 1118
BstX2I RGATCY 3 cut(s) 426, 749, 755
BstXI CCANNNNNNTGG 1 cut(s) 885
BstYI RGATCY 3 cut(s) 426, 749, 755
BsuRI GGCC 3 cut(s) 36, 963, 1191
BtsCI GGATG 3 cut(s) 733, 868, 1077
BtsI GCAGTG 2 cut(s) 150, 631
BtsIMutI CAGTG 6 cut(s) 121, 150, 539, 631, 885, 1233
Cac8I GCNNGC 2 cut(s) 455, 697
CaiI CAGNNNCTG 1 cut(s) 1154
Cfr10I RCCGGY 1 cut(s) 1016
Cfr13I GGNCC 3 cut(s) 49, 221, 962
Csp6I GTAC 2 cut(s) 348, 742
CviQI GTAC 2 cut(s) 348, 742
DdeI CTNAG 2 cut(s) 113, 1236
DpnI GATC 3 cut(s) 428, 751, 757
DpnII GATC 3 cut(s) 426, 749, 755
Eam1104I CTCTTC 1 cut(s) 1034
EarI CTCTTC 1 cut(s) 1034
Eco105I TACGTA 1 cut(s) 487
Eco32I GATATC 1 cut(s) 640
Eco47I GGWCC 2 cut(s) 49, 221
Eco57I CTGAAG 2 cut(s) 533, 1015
Eco91I GGTNACC 1 cut(s) 502
EcoO109I RGGNCCY 1 cut(s) 49
EcoO65I GGTNACC 1 cut(s) 502
EcoRII CCWGG 1 cut(s) 1147
EcoRV GATATC 1 cut(s) 640
FaqI GGGAC 1 cut(s) 250
Fnu4HI GCNGC 3 cut(s) 262, 813, 1132
FokI GGATG 3 cut(s) 740, 875, 1084
Fsp4HI GCNGC 3 cut(s) 262, 813, 1132
FspBI CTAG 1 cut(s) 903
GluI GCNGC 3 cut(s) 262, 813, 1132
GsuI CTGGAG 1 cut(s) 399
HaeIII GGCC 3 cut(s) 36, 963, 1191
HapII CCGG 3 cut(s) 562, 753, 1017
HinfI GANTC 7 cut(s) 109, 136, 574, 720, 1000, 1051, 1086
HpaII CCGG 3 cut(s) 562, 753, 1017
HphI GGTGA 2 cut(s) 164, 514
Hpy166II GTNNAC 2 cut(s) 588, 744
Hpy188I TCNGA 5 cut(s) 10, 131, 513, 579, 1056
Hpy188III TCNNGA 6 cut(s) 219, 378, 424, 562, 753, 820
Hpy8I GTNNAC 2 cut(s) 588, 744
HpyAV CCTTC 4 cut(s) 826, 1075, 1117, 1181
HpyCH4III ACNGT 4 cut(s) 352, 391, 655, 1143
HpyCH4IV ACGT 2 cut(s) 486, 1196
HpyCH4V TGCA 9 cut(s) 148, 249, 261, 311, 497, 684, 896, 1134, 1211
HpyF3I CTNAG 2 cut(s) 113, 1236
HpySE526I ACGT 2 cut(s) 486, 1196
Kpn2I TCCGGA 2 cut(s) 561, 752
Kzo9I GATC 3 cut(s) 426, 749, 755
LmnI GCTCC 1 cut(s) 94
Lsp1109I GCAGC 3 cut(s) 273, 799, 1118
MaeI CTAG 1 cut(s) 903
MaeII ACGT 2 cut(s) 486, 1196
MaeIII GTNAC 7 cut(s) 116, 152, 296, 385, 502, 520, 1102
MalI GATC 3 cut(s) 428, 751, 757
MboI GATC 3 cut(s) 426, 749, 755
MboII GAAGA 7 cut(s) 111, 436, 526, 1021, 1087, 1194, 1196
MfeI CAATTG 2 cut(s) 174, 403
MflI RGATCY 3 cut(s) 426, 749, 755
MlyI GAGTC 2 cut(s) 103, 729
MnlI CCTC 7 cut(s) 16, 40, 125, 234, 1014, 1037, 1216
MroI TCCGGA 2 cut(s) 561, 752
MroXI GAANNNNTTC 1 cut(s) 1090
MseI TTAA 6 cut(s) 30, 417, 435, 533, 855, 992
MslI CAYNNNNRTG 3 cut(s) 42, 198, 452
MspI CCGG 3 cut(s) 562, 753, 1017
MspR9I CCNGG 1 cut(s) 1149
MunI CAATTG 2 cut(s) 174, 403
MvaI CCWGG 1 cut(s) 1149
NdeII GATC 3 cut(s) 426, 749, 755
NlaIV GGNNCC 4 cut(s) 51, 428, 988, 1093
NmuCI GTSAC 4 cut(s) 116, 152, 502, 520
NspI RCATGY 2 cut(s) 457, 472
PaeI GCATGC 1 cut(s) 457
PdmI GAANNNNTTC 1 cut(s) 1090
PfeI GAWTC 5 cut(s) 136, 574, 1000, 1051, 1086
PflMI CCANNNNNTGG 3 cut(s) 59, 179, 1154
PfoI TCCNGGA 1 cut(s) 1147
PkrI GCNGC 3 cut(s) 263, 814, 1133
PleI GAGTC 2 cut(s) 103, 728
PpsI GAGTC 2 cut(s) 103, 728
Ppu21I YACGTR 1 cut(s) 487
PpuMI RGGWCCY 1 cut(s) 49
PshAI GACNNNNGTC 1 cut(s) 202
PshBI ATTAAT 1 cut(s) 855
Psp1406I AACGTT 1 cut(s) 1196
Psp5II RGGWCCY 1 cut(s) 49
Psp6I CCWGG 1 cut(s) 1147
PspEI GGTNACC 1 cut(s) 502
PspGI CCWGG 1 cut(s) 1147
PspN4I GGNNCC 4 cut(s) 51, 428, 988, 1093
PspPI GGNCC 3 cut(s) 49, 221, 962
PspPPI RGGWCCY 1 cut(s) 49
PstNI CAGNNNCTG 1 cut(s) 1154
PsuI RGATCY 3 cut(s) 426, 749, 755
RsaI GTAC 2 cut(s) 349, 743
RsaNI GTAC 2 cut(s) 348, 742
RseI CAYNNNNRTG 3 cut(s) 42, 198, 452
SaqAI TTAA 6 cut(s) 30, 417, 435, 533, 855, 992
SatI GCNGC 3 cut(s) 262, 813, 1132
Sau3AI GATC 3 cut(s) 426, 749, 755
Sau96I GGNCC 3 cut(s) 49, 221, 962
ScaI AGTACT 1 cut(s) 349
SchI GAGTC 2 cut(s) 103, 729
ScrFI CCNGG 1 cut(s) 1149
SfcI CTRYAG 3 cut(s) 654, 973, 1241
SinI GGWCC 2 cut(s) 49, 221
SmiMI CAYNNNNRTG 3 cut(s) 42, 198, 452
SnaBI TACGTA 1 cut(s) 487
SphI GCATGC 1 cut(s) 457
SsiI CCGC 2 cut(s) 92, 860
SspI AATATT 3 cut(s) 85, 493, 529
SspMI CTAG 1 cut(s) 903
StyD4I CCNGG 1 cut(s) 1147
TaaI ACNGT 4 cut(s) 352, 391, 655, 1143
TaiI ACGT 2 cut(s) 489, 1199
TaqI TCGA 1 cut(s) 139
TatI WGTACW 2 cut(s) 347, 741
TfiI GAWTC 5 cut(s) 136, 574, 1000, 1051, 1086
Tru1I TTAA 6 cut(s) 30, 417, 435, 533, 855, 992
Tru9I TTAA 6 cut(s) 30, 417, 435, 533, 855, 992
TscAI CASTG 6 cut(s) 121, 150, 546, 631, 885, 1240
TseFI GTSAC 4 cut(s) 116, 152, 502, 520
TseI GCWGC 3 cut(s) 261, 812, 1131
Tsp45I GTSAC 4 cut(s) 116, 152, 502, 520
TspDTI ATGAA 9 cut(s) 54, 201, 243, 436, 744, 780, 852, 1088, 1094
TspRI CASTG 6 cut(s) 121, 150, 546, 631, 885, 1240
Van91I CCANNNNNTGG 3 cut(s) 59, 179, 1154
VpaK11BI GGWCC 2 cut(s) 49, 221
VspI ATTAAT 1 cut(s) 855
XapI RAATTY 1 cut(s) 337
XceI RCATGY 2 cut(s) 457, 472
XcmI CCANNNNNNNNNTGG 1 cut(s) 976
XmnI GAANNNNTTC 1 cut(s) 1090
XspI CTAG 1 cut(s) 903
ZrmI AGTACT 1 cut(s) 349
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.