MD11G1079100.v1.1

GDP-mannose transporter

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr11
OG0008024
Physical Location & Seq
Reverse (-)
6772504 .. 6775478
2975 bp
Loading structure...
UTR
Exon/CDS
Intron
MD11G1079100.v1.1.491

Sequence Viewer

Length: 1218 bp
ATGGCAGTCGCCTGGAATCTCGCCCTCCCACTCTACAGTACTGCCGCACTTGACTCAGATTTTCGTGCTCTAAAAAAAGATGAGTTTTCACGGATTCACGTGGGTGATTTGTCATCTGATTTCAAGTTGGATGCAGTGAGGGGCCATGATAGTGAGGACCCAGAAGTTGGCTCTATCAATGGAGGAGTCCATTTGATTCTTCCGGAACGAAGAGCTGTGACATTGACTGACAGATTGTTTAGAGGGAGTCAAGGAGGGCACGGTGAGACTGTCTCTATTCCAATCAGTGGAGATGAAAAGCGTGAACATAGGTCAGCAAGGAAATCTGGACCACTGTTGTCTGGGACAGCTTATTGCATTTCTTCTTGTAGTATGATATTGCTGAACAAAGTTGTTCTGTCCGGTTACAACTTCAATGCAGGCGTATCATTGATGTTTTATCAAAATTTGATAAGTACCATAATTGTTGTCCTCCTGGGTTTATCTGGAGTTGTTACAGTGGAAAAGCTGAATTGGAAACTGGTTAGGGTCTGGATCCCTGTCAATGTAATCTTCATTGGAATGCTTGTATCAGGCATGTATAGTTTGAAATATGTAAATATTGCAATGGTGACCATTCTGAAGAATGTGACAAATATTTTAACAGCGCTTGGAGAATTATATTTGTTCTGGAAACATCAGAATCAGAAAGTGTGGACTGCCATGTTTATGATGATTATCTCTTCTATCAGCAGTGGCATTACAGATATCTCCTTTGGCACAGTAGGTTACGCATGGCAGCTTTCAAATTGCGTACTAACAGCAAGCTACTCATTAAGTATCATGGATGAGGCAAAAAAGTACACAAGATCTGGATCCCTCAACGAAGTTTCAATGGTCTTGCTGAATAATTTGTTATCTCTACCTTTTGCTGCCTTCTTGATTGTTCTGTTTGATGAATGGGAATATATAATGAACGTAGATGTGATCAAATTGCCAATGTTTTGGGTTGTTGCAACAGCTAGTGGATTGCTTGGACTTGCCATCAGCTTCACCTCCATGTGGTTTTCACATCAAACTGGCCCAACCACTTATCGTCTCGTTGGTTCCTTAAACAAGATTCCGATCTCGCGTGCTGGTTTAGTCCTGTTCAGGGTGCCCCTTAGCCTACTAAACCTCTTCAGTATACTATTTGGTTTATTCGCCGGAATATTTTTTGCCAGGGCCAAAATGTCCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
TPT

Protein Analysis

406

Amino Acids

44.7

Weight (kDa)

9.11

Isoelectric Point (pI)

23.73

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
TPT PF03151 117 - 393 1.9e-06 Triose-phosphate Transporter family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 1135
AccB7I CCANNNNNTGG 2 cut(s) 167, 287
AccI GTMKAC 1 cut(s) 1165
AccII CGCG 1 cut(s) 1111
AccIII TCCGGA 1 cut(s) 202
AciI CCGC 1 cut(s) 45
AclWI GGATC 4 cut(s) 529, 542, 849, 862
AcsI RAATTY 1 cut(s) 445
AcuI CTGAAG 2 cut(s) 641, 1144
AcvI CACGTG 1 cut(s) 100
AfaI GTAC 4 cut(s) 40, 457, 795, 842
AfeI AGCGCT 1 cut(s) 648
AfiI CCNNNNNNNGG 4 cut(s) 167, 287, 1041, 1132
AgsI TTSAA 5 cut(s) 124, 415, 589, 786, 873
AjnI CCWGG 3 cut(s) 11, 474, 1199
AleI CACNNNNGTG 1 cut(s) 102
AluBI AGCT 7 cut(s) 215, 350, 508, 781, 807, 1001, 1029
AluI AGCT 7 cut(s) 215, 350, 508, 781, 807, 1001, 1029
Alw21I GWGCWC 1 cut(s) 70
Alw26I GTCTC 3 cut(s) 260, 277, 1082
AlwI GGATC 4 cut(s) 529, 542, 849, 862
Aor13HI TCCGGA 1 cut(s) 202
Aor51HI AGCGCT 1 cut(s) 648
AoxI GGCC 3 cut(s) 142, 1060, 1203
ApeKI GCWGC 2 cut(s) 778, 911
ApoI RAATTY 1 cut(s) 445
AspLEI GCGC 1 cut(s) 649
AspS9I GGNCC 5 cut(s) 142, 157, 329, 1061, 1203
AsuHPI GGTGA 4 cut(s) 116, 275, 622, 1024
AvaII GGWCC 2 cut(s) 157, 329
BaeGI GKGCMC 2 cut(s) 261, 1140
BamHI GGATCC 2 cut(s) 534, 854
BanI GGYRCC 1 cut(s) 1135
BbrPI CACGTG 1 cut(s) 100
Bbv12I GWGCWC 1 cut(s) 70
BbvI GCAGC 2 cut(s) 790, 898
BccI CCATC 1 cut(s) 1031
BciT130I CCWGG 3 cut(s) 13, 476, 1201
BclI TGATCA 1 cut(s) 966
BcoDI GTCTC 3 cut(s) 260, 277, 1082
BfaI CTAG 1 cut(s) 1002
BfmI CTRYAG 1 cut(s) 34
BfoI RGCGCY 1 cut(s) 650
BglII AGATCT 1 cut(s) 848
BisI GCNGC 3 cut(s) 45, 779, 912
BlsI GCNGC 3 cut(s) 46, 780, 913
BmcAI AGTACT 1 cut(s) 40
Bme1390I CCNGG 3 cut(s) 13, 476, 1201
Bme18I GGWCC 2 cut(s) 157, 329
BmgT120I GGNCC 5 cut(s) 142, 157, 329, 1061, 1203
BmiI GGNNCC 6 cut(s) 143, 159, 536, 856, 1087, 1137
BmrFI CCNGG 3 cut(s) 13, 476, 1201
BmsI GCATC 1 cut(s) 121
BplI GAGNNNNNCTC 2 cut(s) 257, 289
BpmI CTGGAG 1 cut(s) 507
Bpu10I CCTNAGC 1 cut(s) 1142
BsaAI YACGTR 1 cut(s) 100
BsaBI GATNNNNATC 3 cut(s) 716, 853, 1103
BsaJI CCNNGG 2 cut(s) 475, 1200
BsaWI WCCGGW 2 cut(s) 202, 401
Bsc4I CCNNNNNNNGG 4 cut(s) 167, 287, 1041, 1132
Bse1I ACTGG 2 cut(s) 525, 1063
Bse3DI GCAATG 1 cut(s) 612
Bse8I GATNNNNATC 3 cut(s) 716, 853, 1103
BseAI TCCGGA 1 cut(s) 202
BseBI CCWGG 3 cut(s) 13, 476, 1201
BseDI CCNNGG 2 cut(s) 475, 1200
BseGI GGATG 2 cut(s) 136, 832
BseJI GATNNNNATC 3 cut(s) 716, 853, 1103
BseLI CCNNNNNNNGG 4 cut(s) 167, 287, 1041, 1132
BseMI GCAATG 1 cut(s) 612
BseMII CTCAG 1 cut(s) 69
BseNI ACTGG 2 cut(s) 525, 1063
BseRI GAGGAG 1 cut(s) 198
BseSI GKGCMC 2 cut(s) 261, 1140
BseXI GCAGC 2 cut(s) 790, 898
Bsh1236I CGCG 1 cut(s) 1111
BshFI GGCC 3 cut(s) 144, 1062, 1205
BshNI GGYRCC 1 cut(s) 1135
BsiHKAI GWGCWC 1 cut(s) 70
BsiSI CCGG 3 cut(s) 203, 402, 1185
BslFI GGGAC 1 cut(s) 358
BslI CCNNNNNNNGG 4 cut(s) 167, 287, 1041, 1132
BsmAI GTCTC 3 cut(s) 260, 277, 1082
BsmBI CGTCTC 1 cut(s) 1082
BsmFI GGGAC 1 cut(s) 358
BsmI GAATGC 1 cut(s) 567
BsnI GGCC 3 cut(s) 144, 1062, 1205
Bsp1286I GDGCHC 3 cut(s) 70, 261, 1140
Bsp13I TCCGGA 1 cut(s) 202
Bsp143I GATC 5 cut(s) 534, 848, 854, 966, 1104
BspACI CCGC 1 cut(s) 45
BspANI GGCC 3 cut(s) 144, 1062, 1205
BspCNI CTCAG 1 cut(s) 68
BspEI TCCGGA 1 cut(s) 202
BspFNI CGCG 1 cut(s) 1111
BspLI GGNNCC 6 cut(s) 143, 159, 536, 856, 1087, 1137
BspPI GGATC 4 cut(s) 529, 542, 849, 862
BspQI GCTCTTC 1 cut(s) 205
BspT107I GGYRCC 1 cut(s) 1135
BsrDI GCAATG 1 cut(s) 612
BsrI ACTGG 2 cut(s) 525, 1063
BssECI CCNNGG 2 cut(s) 475, 1200
BssMI GATC 5 cut(s) 534, 848, 854, 966, 1104
BssNAI GTATAC 1 cut(s) 1166
Bst1107I GTATAC 1 cut(s) 1166
Bst2UI CCWGG 3 cut(s) 13, 476, 1201
Bst4CI ACNGT 6 cut(s) 38, 263, 271, 336, 499, 763
Bst6I CTCTTC 3 cut(s) 205, 727, 1163
BstBAI YACGTR 1 cut(s) 100
BstC8I GCNNGC 3 cut(s) 421, 805, 1113
BstDEI CTNAG 2 cut(s) 55, 1142
BstEII GGTNACC 1 cut(s) 610
BstF5I GGATG 2 cut(s) 136, 832
BstFNI CGCG 1 cut(s) 1111
BstH2I RGCGCY 1 cut(s) 650
BstHHI GCGC 1 cut(s) 649
BstKTI GATC 5 cut(s) 537, 851, 857, 969, 1107
BstMAI GTCTC 3 cut(s) 260, 277, 1082
BstMBI GATC 5 cut(s) 534, 848, 854, 966, 1104
BstNI CCWGG 3 cut(s) 13, 476, 1201
BstNSI RCATGY 1 cut(s) 580
BstPI GGTNACC 1 cut(s) 610
BstSCI CCNGG 3 cut(s) 11, 474, 1199
BstSFI CTRYAG 1 cut(s) 34
BstSLI GKGCMC 2 cut(s) 261, 1140
BstUI CGCG 1 cut(s) 1111
BstV1I GCAGC 2 cut(s) 790, 898
BstX2I RGATCY 3 cut(s) 534, 848, 854
BstXI CCANNNNNNTGG 1 cut(s) 984
BstYI RGATCY 3 cut(s) 534, 848, 854
BstZ17I GTATAC 1 cut(s) 1166
BsuRI GGCC 3 cut(s) 144, 1062, 1205
BtsCI GGATG 2 cut(s) 136, 832
BtsI GCAGTG 2 cut(s) 141, 739
BtsIMutI CAGTG 5 cut(s) 141, 292, 332, 504, 739
Cac8I GCNNGC 3 cut(s) 421, 805, 1113
CfoI GCGC 1 cut(s) 649
Cfr13I GGNCC 5 cut(s) 142, 157, 329, 1061, 1203
Csp6I GTAC 4 cut(s) 39, 456, 794, 841
CviAII CATG 6 cut(s) 146, 577, 703, 774, 823, 1039
CviQI GTAC 4 cut(s) 39, 456, 794, 841
DdeI CTNAG 2 cut(s) 55, 1142
DpnI GATC 5 cut(s) 536, 850, 856, 968, 1106
DpnII GATC 5 cut(s) 534, 848, 854, 966, 1104
Eam1104I CTCTTC 3 cut(s) 205, 727, 1163
EarI CTCTTC 3 cut(s) 205, 727, 1163
Eco32I GATATC 1 cut(s) 748
Eco47I GGWCC 2 cut(s) 157, 329
Eco47III AGCGCT 1 cut(s) 648
Eco57I CTGAAG 2 cut(s) 641, 1144
Eco72I CACGTG 1 cut(s) 100
Eco91I GGTNACC 1 cut(s) 610
EcoO109I RGGNCCY 1 cut(s) 157
EcoO65I GGTNACC 1 cut(s) 610
EcoRII CCWGG 3 cut(s) 11, 474, 1199
EcoRV GATATC 1 cut(s) 748
Esp3I CGTCTC 1 cut(s) 1082
FaeI CATG 6 cut(s) 149, 580, 706, 777, 826, 1042
FaqI GGGAC 1 cut(s) 358
FatI CATG 6 cut(s) 145, 576, 702, 773, 822, 1038
FbaI TGATCA 1 cut(s) 966
FblI GTMKAC 1 cut(s) 1165
Fnu4HI GCNGC 3 cut(s) 45, 779, 912
FokI GGATG 2 cut(s) 143, 839
Fsp4HI GCNGC 3 cut(s) 45, 779, 912
FspBI CTAG 1 cut(s) 1002
GlaI GCGC 1 cut(s) 648
GluI GCNGC 3 cut(s) 45, 779, 912
GsuI CTGGAG 1 cut(s) 507
HaeII RGCGCY 1 cut(s) 650
HaeIII GGCC 3 cut(s) 144, 1062, 1205
HapII CCGG 3 cut(s) 203, 402, 1185
HhaI GCGC 1 cut(s) 649
Hin1II CATG 6 cut(s) 149, 580, 706, 777, 826, 1042
Hin6I GCGC 1 cut(s) 647
HinP1I GCGC 1 cut(s) 647
HinfI GANTC 8 cut(s) 16, 53, 94, 186, 196, 247, 682, 1099
HpaII CCGG 3 cut(s) 203, 402, 1185
HphI GGTGA 4 cut(s) 116, 275, 622, 1024
Hpy166II GTNNAC 4 cut(s) 305, 696, 843, 1166
Hpy188I TCNGA 6 cut(s) 58, 118, 621, 681, 687, 1104
Hpy188III TCNNGA 8 cut(s) 203, 327, 486, 532, 670, 852, 919, 1215
Hpy8I GTNNAC 4 cut(s) 305, 696, 843, 1166
HpyAV CCTTC 1 cut(s) 925
HpyCH4III ACNGT 6 cut(s) 38, 263, 271, 336, 499, 763
HpyCH4IV ACGT 2 cut(s) 99, 957
HpyCH4V TGCA 5 cut(s) 134, 357, 419, 605, 995
HpyF3I CTNAG 2 cut(s) 55, 1142
HpySE526I ACGT 2 cut(s) 99, 957
Hsp92II CATG 6 cut(s) 149, 580, 706, 777, 826, 1042
HspAI GCGC 1 cut(s) 647
Kpn2I TCCGGA 1 cut(s) 202
Ksp22I TGATCA 1 cut(s) 966
Kzo9I GATC 5 cut(s) 534, 848, 854, 966, 1104
LguI GCTCTTC 1 cut(s) 205
Lsp1109I GCAGC 2 cut(s) 790, 898
LweI GCATC 1 cut(s) 121
MaeI CTAG 1 cut(s) 1002
MaeII ACGT 2 cut(s) 99, 957
MaeIII GTNAC 6 cut(s) 217, 404, 493, 610, 628, 767
MalI GATC 5 cut(s) 536, 850, 856, 968, 1106
MboI GATC 5 cut(s) 534, 848, 854, 966, 1104
MboII GAAGA 7 cut(s) 191, 222, 354, 544, 634, 714, 1150
MflI RGATCY 3 cut(s) 534, 848, 854
MhlI GDGCHC 3 cut(s) 70, 261, 1140
MluCI AATT 7 cut(s) 445, 462, 511, 656, 787, 889, 971
MlyI GAGTC 3 cut(s) 47, 195, 256
MmeI TCCRAC 1 cut(s) 108
MroI TCCGGA 1 cut(s) 202
MseI TTAA 3 cut(s) 641, 815, 1091
MslI CAYNNNNRTG 5 cut(s) 102, 150, 560, 707, 1037
MspI CCGG 3 cut(s) 203, 402, 1185
MspR9I CCNGG 3 cut(s) 13, 476, 1201
Mva1269I GAATGC 1 cut(s) 567
MvaI CCWGG 3 cut(s) 13, 476, 1201
MvnI CGCG 1 cut(s) 1111
NdeII GATC 5 cut(s) 534, 848, 854, 966, 1104
NlaIII CATG 6 cut(s) 149, 580, 706, 777, 826, 1042
NlaIV GGNNCC 6 cut(s) 143, 159, 536, 856, 1087, 1137
NmuCI GTSAC 3 cut(s) 217, 610, 628
NspI RCATGY 1 cut(s) 580
OliI CACNNNNGTG 1 cut(s) 102
PciSI GCTCTTC 1 cut(s) 205
PctI GAATGC 1 cut(s) 567
PfeI GAWTC 5 cut(s) 16, 94, 196, 682, 1099
PflMI CCANNNNNTGG 2 cut(s) 167, 287
PkrI GCNGC 3 cut(s) 46, 780, 913
PleI GAGTC 3 cut(s) 47, 194, 255
PmaCI CACGTG 1 cut(s) 100
PmlI CACGTG 1 cut(s) 100
PpsI GAGTC 3 cut(s) 47, 194, 255
Ppu21I YACGTR 1 cut(s) 100
PpuMI RGGWCCY 1 cut(s) 157
Psp5II RGGWCCY 1 cut(s) 157
Psp6I CCWGG 3 cut(s) 11, 474, 1199
PspCI CACGTG 1 cut(s) 100
PspEI GGTNACC 1 cut(s) 610
PspGI CCWGG 3 cut(s) 11, 474, 1199
PspN4I GGNNCC 6 cut(s) 143, 159, 536, 856, 1087, 1137
PspPI GGNCC 5 cut(s) 142, 157, 329, 1061, 1203
PspPPI RGGWCCY 1 cut(s) 157
PsuI RGATCY 3 cut(s) 534, 848, 854
RsaI GTAC 4 cut(s) 40, 457, 795, 842
RsaNI GTAC 4 cut(s) 39, 456, 794, 841
RseI CAYNNNNRTG 5 cut(s) 102, 150, 560, 707, 1037
SapI GCTCTTC 1 cut(s) 205
SaqAI TTAA 3 cut(s) 641, 815, 1091
SatI GCNGC 3 cut(s) 45, 779, 912
Sau3AI GATC 5 cut(s) 534, 848, 854, 966, 1104
Sau96I GGNCC 5 cut(s) 142, 157, 329, 1061, 1203
ScaI AGTACT 1 cut(s) 40
SchI GAGTC 3 cut(s) 47, 195, 256
ScrFI CCNGG 3 cut(s) 13, 476, 1201
SduI GDGCHC 3 cut(s) 70, 261, 1140
SfaNI GCATC 1 cut(s) 121
SfcI CTRYAG 1 cut(s) 34
SinI GGWCC 2 cut(s) 157, 329
SmiMI CAYNNNNRTG 5 cut(s) 102, 150, 560, 707, 1037
Sse9I AATT 7 cut(s) 445, 462, 511, 656, 787, 889, 971
SsiI CCGC 1 cut(s) 45
SspI AATATT 3 cut(s) 601, 637, 1191
SspMI CTAG 1 cut(s) 1002
StyD4I CCNGG 3 cut(s) 11, 474, 1199
TaaI ACNGT 6 cut(s) 38, 263, 271, 336, 499, 763
TaiI ACGT 2 cut(s) 102, 960
TasI AATT 7 cut(s) 445, 462, 511, 656, 787, 889, 971
TatI WGTACW 2 cut(s) 38, 840
TauI GCSGC 1 cut(s) 47
TfiI GAWTC 5 cut(s) 16, 94, 196, 682, 1099
Tru1I TTAA 3 cut(s) 641, 815, 1091
Tru9I TTAA 3 cut(s) 641, 815, 1091
TscAI CASTG 5 cut(s) 141, 292, 339, 504, 739
TseFI GTSAC 3 cut(s) 217, 610, 628
TseI GCWGC 2 cut(s) 778, 911
Tsp45I GTSAC 3 cut(s) 217, 610, 628
TspDTI ATGAA 4 cut(s) 309, 544, 951, 968
TspGWI ACGGA 1 cut(s) 106
TspRI CASTG 5 cut(s) 141, 292, 339, 504, 739
Van91I CCANNNNNTGG 2 cut(s) 167, 287
VpaK11BI GGWCC 2 cut(s) 157, 329
XapI RAATTY 1 cut(s) 445
XceI RCATGY 1 cut(s) 580
XmiI GTMKAC 1 cut(s) 1165
XspI CTAG 1 cut(s) 1002
ZrmI AGTACT 1 cut(s) 40
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.