Prupe.6G059800_v2.0.a1

GDP-mannose transporter

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp06
OG0008024
Physical Location & Seq
Reverse (-)
4154356 .. 4158112
3757 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.6G059800.3

Sequence Viewer

Length: 1236 bp
ATGTCATCTGATTTCAAGTTAGATGCAGTTAAAGGCCATGATAGTGAGGACCCAGAAGTTGGTCCTCTAAATGGAGTTCATACCATTCTTCCAGAACGTAGAGCTACGACTTTGAGTGACAGATTGTTTAGAGGGAGTCGAGCTGGGCATGGCGAGATTGTCTCTATTCCGAATGAAAAGCGTGGACATGGGTCAGCAAAGAAATCTGGACCTCTGTTGTCTGGGACAGCTTATTGCATTTCTTCTTGCAGCATGATACTGCTGAACAAAGTTGTTCTGTCCAGTTACAACTTCAATGCAGGAGTATCCTTGATGTTTTATCAGAATTTGATAAGTTCCGTAATTGTTGTCCTCTTGGGCTTCTCTGGAGTTGTTACTGTGGAAAAGCTCAATTGGAAACTGGTCAGGGTCTGGATCCCTGTCAACATAATCTTCATCAGCATGCTTGTGTCTGGCATGTATAGTTTGAAATACGTAAATATTGCAATGGTCACCATTCTGAAGAATGTGACAAATATTTTAACAGCAATTGGAGAATTATATTTGTTCCGGAAACATCAGAGTCAGAAAGTGTGGACTGCCATGTTTTTGATGATTATCTCCGCTATCAGCAGTGGCATTACAGATATCTCCTTTGATACATTAGGTTATGCATGGCAGATTTCGAATTGCATACTAACAGCAAGCTACTCACTCACTCTACGGCGAGTCATGGATGAAGCAAAAAAATACACAAGATCTGGCTCTCTCAATGAAGTTTCGATGGTCTTGCTGAATAATTTGTTATCTCTACCATTTGCCGCCTTCTTGATTATTATGTTTGATGAATGGGAATATATAAAAAGCGTGGATGTAATCAAATTGCCTATGTTTTGGGTCATTGCAACAGCTAGTGGATTGCTTGGACTTGCCATCAGCTTCACCTCCATGTGGTTTTTACATCAAACTGGCCCCACCACCTATAGTCTGGTGGGTTCCTTAAACAAGATTCCGATCTCGCTTGCCGGTTTAGTCCTGTTCAAGGTTTATTTGCCGGAATATTCTTCGCCAAGGCCAAGATGTCCTGATCCAGGCCTGGATTTTAGAATTGAGGTGAAGGAACTAACTCATGCTCAGATAAAAGAAAGGCAAACTGCCTGCACAAACAGTTTCTGGGCTTGGAAGAAGTACTGGATATACTTCTTTTCTTTCTTTTTGATGGAGAAAGCAAAGATTTTATTTGTTTTACAAGCATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
TPT

Protein Analysis

412

Amino Acids

46.12

Weight (kDa)

9.31

Isoelectric Point (pI)

29.98

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 59
AccIII TCCGGA 1 cut(s) 549
AciI CCGC 2 cut(s) 603, 801
AclWI GGATC 3 cut(s) 409, 422, 1061
AcsI RAATTY 1 cut(s) 325
AcuI CTGAAG 1 cut(s) 521
AfaI GTAC 1 cut(s) 1169
AfiI CCNNNNNNNGG 5 cut(s) 59, 71, 930, 1021, 1070
AgsI TTSAA 4 cut(s) 16, 295, 469, 1021
AjnI CCWGG 2 cut(s) 1069, 1074
AluBI AGCT 7 cut(s) 104, 143, 230, 388, 687, 890, 918
AluI AGCT 7 cut(s) 104, 143, 230, 388, 687, 890, 918
Alw26I GTCTC 1 cut(s) 166
AlwI GGATC 3 cut(s) 409, 422, 1061
AlwNI CAGNNNCTG 2 cut(s) 411, 1152
Aor13HI TCCGGA 1 cut(s) 549
AoxI GGCC 4 cut(s) 34, 949, 1052, 1072
ApeKI GCWGC 1 cut(s) 249
ApoI RAATTY 1 cut(s) 325
AspS9I GGNCC 4 cut(s) 49, 62, 209, 950
AsuHPI GGTGA 3 cut(s) 484, 913, 1105
AsuII TTCGAA 1 cut(s) 665
AvaII GGWCC 3 cut(s) 49, 62, 209
BamHI GGATCC 1 cut(s) 414
BbvI GCAGC 1 cut(s) 261
BccI CCATC 3 cut(s) 757, 920, 1192
BceAI ACGGC 1 cut(s) 719
BcgI CGANNNNNNTGC 2 cut(s) 751, 785
BciT130I CCWGG 2 cut(s) 1071, 1076
BciVI GTATCC 1 cut(s) 316
BcoDI GTCTC 1 cut(s) 166
BfaI CTAG 1 cut(s) 891
BfmI CTRYAG 1 cut(s) 961
BfuI GTATCC 1 cut(s) 316
BglII AGATCT 1 cut(s) 737
BisI GCNGC 2 cut(s) 250, 801
BlsI GCNGC 2 cut(s) 251, 802
BmcAI AGTACT 1 cut(s) 1169
Bme1390I CCNGG 2 cut(s) 1071, 1076
Bme18I GGWCC 3 cut(s) 49, 62, 209
BmgT120I GGNCC 4 cut(s) 49, 62, 209, 950
BmiI GGNNCC 4 cut(s) 51, 416, 952, 976
BmrFI CCNGG 2 cut(s) 1071, 1076
BmsI GCATC 1 cut(s) 13
BoxI GACNNNNGTC 1 cut(s) 190
BplI GAGNNNNNCTC 2 cut(s) 146, 178
BpmI CTGGAG 1 cut(s) 387
Bpu14I TTCGAA 1 cut(s) 665
BsaAI YACGTR 1 cut(s) 475
BsaBI GATNNNNATC 2 cut(s) 596, 992
BsaJI CCNNGG 1 cut(s) 1049
BsaWI WCCGGW 1 cut(s) 549
Bsc4I CCNNNNNNNGG 5 cut(s) 59, 71, 930, 1021, 1070
Bse118I RCCGGY 1 cut(s) 1004
Bse1I ACTGG 4 cut(s) 282, 405, 952, 1175
Bse3DI GCAATG 2 cut(s) 492, 879
Bse8I GATNNNNATC 2 cut(s) 596, 992
BseAI TCCGGA 1 cut(s) 549
BseBI CCWGG 2 cut(s) 1071, 1076
BseDI CCNNGG 1 cut(s) 1049
BseGI GGATG 2 cut(s) 721, 856
BseJI GATNNNNATC 2 cut(s) 596, 992
BseLI CCNNNNNNNGG 5 cut(s) 59, 71, 930, 1021, 1070
BseMI GCAATG 2 cut(s) 492, 879
BseMII CTCAG 1 cut(s) 1127
BseNI ACTGG 4 cut(s) 282, 405, 952, 1175
BseXI GCAGC 1 cut(s) 261
BseYI CCCAGC 1 cut(s) 143
BsgI GTGCAG 1 cut(s) 1123
BshFI GGCC 4 cut(s) 36, 951, 1054, 1074
BsiSI CCGG 3 cut(s) 550, 1005, 1034
BslFI GGGAC 1 cut(s) 238
BslI CCNNNNNNNGG 5 cut(s) 59, 71, 930, 1021, 1070
BsmAI GTCTC 1 cut(s) 166
BsmFI GGGAC 1 cut(s) 238
BsnI GGCC 4 cut(s) 36, 951, 1054, 1074
Bsp119I TTCGAA 1 cut(s) 665
Bsp13I TCCGGA 1 cut(s) 549
Bsp143I GATC 4 cut(s) 414, 737, 993, 1066
BspACI CCGC 2 cut(s) 603, 801
BspANI GGCC 4 cut(s) 36, 951, 1054, 1074
BspCNI CTCAG 1 cut(s) 1126
BspEI TCCGGA 1 cut(s) 549
BspLI GGNNCC 4 cut(s) 51, 416, 952, 976
BspPI GGATC 3 cut(s) 409, 422, 1061
BspT104I TTCGAA 1 cut(s) 665
BsrDI GCAATG 2 cut(s) 492, 879
BsrFI RCCGGY 1 cut(s) 1004
BsrI ACTGG 4 cut(s) 282, 405, 952, 1175
BssAI RCCGGY 1 cut(s) 1004
BssECI CCNNGG 1 cut(s) 1049
BssMI GATC 4 cut(s) 414, 737, 993, 1066
BssT1I CCWWGG 1 cut(s) 1049
Bst2UI CCWGG 2 cut(s) 1071, 1076
Bst4CI ACNGT 2 cut(s) 379, 1148
BstBAI YACGTR 1 cut(s) 475
BstBI TTCGAA 1 cut(s) 665
BstC8I GCNNGC 4 cut(s) 443, 685, 1002, 1138
BstDEI CTNAG 1 cut(s) 1113
BstEII GGTNACC 1 cut(s) 490
BstENI CCTNNNNNAGG 2 cut(s) 1019, 1068
BstF5I GGATG 2 cut(s) 721, 856
BstKTI GATC 4 cut(s) 417, 740, 996, 1069
BstMAI GTCTC 1 cut(s) 166
BstMBI GATC 4 cut(s) 414, 737, 993, 1066
BstNI CCWGG 2 cut(s) 1071, 1076
BstNSI RCATGY 2 cut(s) 445, 460
BstPAI GACNNNNGTC 1 cut(s) 190
BstPI GGTNACC 1 cut(s) 490
BstSCI CCNGG 2 cut(s) 1069, 1074
BstSFI CTRYAG 1 cut(s) 961
BstSNI TACGTA 1 cut(s) 475
BstV1I GCAGC 1 cut(s) 261
BstX2I RGATCY 2 cut(s) 414, 737
BstYI RGATCY 2 cut(s) 414, 737
BsuI GTATCC 1 cut(s) 316
BsuRI GGCC 4 cut(s) 36, 951, 1054, 1074
BtsCI GGATG 2 cut(s) 721, 856
BtsI GCAGTG 1 cut(s) 619
BtsIMutI CAGTG 1 cut(s) 619
Cac8I GCNNGC 4 cut(s) 443, 685, 1002, 1138
CaiI CAGNNNCTG 2 cut(s) 411, 1152
Cfr10I RCCGGY 1 cut(s) 1004
Cfr13I GGNCC 4 cut(s) 49, 62, 209, 950
Csp6I GTAC 1 cut(s) 1168
CviQI GTAC 1 cut(s) 1168
DdeI CTNAG 1 cut(s) 1113
DpnI GATC 4 cut(s) 416, 739, 995, 1068
DpnII GATC 4 cut(s) 414, 737, 993, 1066
Eco105I TACGTA 1 cut(s) 475
Eco130I CCWWGG 1 cut(s) 1049
Eco147I AGGCCT 1 cut(s) 1074
Eco32I GATATC 1 cut(s) 628
Eco47I GGWCC 3 cut(s) 49, 62, 209
Eco57I CTGAAG 1 cut(s) 521
Eco91I GGTNACC 1 cut(s) 490
EcoNI CCTNNNNNAGG 2 cut(s) 1019, 1068
EcoO109I RGGNCCY 1 cut(s) 49
EcoO65I GGTNACC 1 cut(s) 490
EcoRII CCWGG 2 cut(s) 1069, 1074
EcoRV GATATC 1 cut(s) 628
EcoT14I CCWWGG 1 cut(s) 1049
EcoT22I ATGCAT 1 cut(s) 655
ErhI CCWWGG 1 cut(s) 1049
FaqI GGGAC 1 cut(s) 238
Fnu4HI GCNGC 2 cut(s) 250, 801
FokI GGATG 2 cut(s) 728, 863
Fsp4HI GCNGC 2 cut(s) 250, 801
FspBI CTAG 1 cut(s) 891
GluI GCNGC 2 cut(s) 250, 801
GsaI CCCAGC 1 cut(s) 147
GsuI CTGGAG 1 cut(s) 387
HaeIII GGCC 4 cut(s) 36, 951, 1054, 1074
HapII CCGG 3 cut(s) 550, 1005, 1034
HincII GTYRAC 1 cut(s) 424
HindII GTYRAC 1 cut(s) 424
HinfI GANTC 4 cut(s) 136, 562, 708, 988
HpaII CCGG 3 cut(s) 550, 1005, 1034
HphI GGTGA 3 cut(s) 484, 913, 1105
Hpy166II GTNNAC 3 cut(s) 185, 424, 576
Hpy188I TCNGA 8 cut(s) 10, 171, 324, 501, 561, 567, 993, 1116
Hpy188III TCNNGA 7 cut(s) 92, 207, 366, 412, 550, 808, 1064
Hpy8I GTNNAC 3 cut(s) 185, 424, 576
HpyAV CCTTC 2 cut(s) 814, 1090
HpyCH4III ACNGT 2 cut(s) 379, 1148
HpyCH4IV ACGT 2 cut(s) 97, 474
HpyCH4V TGCA 9 cut(s) 26, 237, 249, 299, 485, 653, 672, 884, 1140
HpyF3I CTNAG 1 cut(s) 1113
HpySE526I ACGT 2 cut(s) 97, 474
Kpn2I TCCGGA 1 cut(s) 549
Kzo9I GATC 4 cut(s) 414, 737, 993, 1066
Lsp1109I GCAGC 1 cut(s) 261
LweI GCATC 1 cut(s) 13
MaeI CTAG 1 cut(s) 891
MaeII ACGT 2 cut(s) 97, 474
MaeIII GTNAC 5 cut(s) 116, 284, 373, 490, 508
MalI GATC 4 cut(s) 416, 739, 995, 1068
MboI GATC 4 cut(s) 414, 737, 993, 1066
MboII GAAGA 6 cut(s) 80, 234, 424, 514, 1035, 1174
MfeI CAATTG 2 cut(s) 391, 528
MflI RGATCY 2 cut(s) 414, 737
MluCI AATT 9 cut(s) 325, 342, 391, 528, 536, 667, 778, 860, 1086
MlyI GAGTC 3 cut(s) 145, 571, 717
MnlI CCTC 7 cut(s) 40, 75, 125, 222, 362, 934, 1084
Mph1103I ATGCAT 1 cut(s) 655
MroI TCCGGA 1 cut(s) 549
MseI TTAA 3 cut(s) 30, 521, 980
MslI CAYNNNNRTG 4 cut(s) 42, 440, 446, 926
MspI CCGG 3 cut(s) 550, 1005, 1034
MspR9I CCNGG 2 cut(s) 1071, 1076
MunI CAATTG 2 cut(s) 391, 528
MvaI CCWGG 2 cut(s) 1071, 1076
NdeII GATC 4 cut(s) 414, 737, 993, 1066
NlaIV GGNNCC 4 cut(s) 51, 416, 952, 976
NmuCI GTSAC 3 cut(s) 116, 490, 508
NsiI ATGCAT 1 cut(s) 655
NspI RCATGY 2 cut(s) 445, 460
NspV TTCGAA 1 cut(s) 665
PaeI GCATGC 1 cut(s) 445
PceI AGGCCT 1 cut(s) 1074
PfeI GAWTC 1 cut(s) 988
PflMI CCANNNNNTGG 1 cut(s) 59
PkrI GCNGC 2 cut(s) 251, 802
PleI GAGTC 3 cut(s) 144, 570, 716
PpsI GAGTC 3 cut(s) 144, 570, 716
Ppu21I YACGTR 1 cut(s) 475
PpuMI RGGWCCY 1 cut(s) 49
PshAI GACNNNNGTC 1 cut(s) 190
Psp5II RGGWCCY 1 cut(s) 49
Psp6I CCWGG 2 cut(s) 1069, 1074
PspEI GGTNACC 1 cut(s) 490
PspFI CCCAGC 1 cut(s) 143
PspGI CCWGG 2 cut(s) 1069, 1074
PspN4I GGNNCC 4 cut(s) 51, 416, 952, 976
PspPI GGNCC 4 cut(s) 49, 62, 209, 950
PspPPI RGGWCCY 1 cut(s) 49
PstNI CAGNNNCTG 2 cut(s) 411, 1152
PsuI RGATCY 2 cut(s) 414, 737
RsaI GTAC 1 cut(s) 1169
RsaNI GTAC 1 cut(s) 1168
RseI CAYNNNNRTG 4 cut(s) 42, 440, 446, 926
SaqAI TTAA 3 cut(s) 30, 521, 980
SatI GCNGC 2 cut(s) 250, 801
Sau3AI GATC 4 cut(s) 414, 737, 993, 1066
Sau96I GGNCC 4 cut(s) 49, 62, 209, 950
ScaI AGTACT 1 cut(s) 1169
SchI GAGTC 3 cut(s) 145, 571, 717
ScrFI CCNGG 2 cut(s) 1071, 1076
SfaNI GCATC 1 cut(s) 13
SfcI CTRYAG 1 cut(s) 961
SfuI TTCGAA 1 cut(s) 665
SinI GGWCC 3 cut(s) 49, 62, 209
SmiMI CAYNNNNRTG 4 cut(s) 42, 440, 446, 926
SnaBI TACGTA 1 cut(s) 475
SphI GCATGC 1 cut(s) 445
Sse9I AATT 9 cut(s) 325, 342, 391, 528, 536, 667, 778, 860, 1086
SseBI AGGCCT 1 cut(s) 1074
SsiI CCGC 2 cut(s) 603, 801
SspI AATATT 3 cut(s) 481, 517, 1040
SspMI CTAG 1 cut(s) 891
StuI AGGCCT 1 cut(s) 1074
StyD4I CCNGG 2 cut(s) 1069, 1074
StyI CCWWGG 1 cut(s) 1049
TaaI ACNGT 2 cut(s) 379, 1148
TaiI ACGT 2 cut(s) 100, 477
TaqI TCGA 3 cut(s) 139, 665, 761
TasI AATT 9 cut(s) 325, 342, 391, 528, 536, 667, 778, 860, 1086
TatI WGTACW 1 cut(s) 1167
TauI GCSGC 1 cut(s) 803
TfiI GAWTC 1 cut(s) 988
Tru1I TTAA 3 cut(s) 30, 521, 980
Tru9I TTAA 3 cut(s) 30, 521, 980
TscAI CASTG 1 cut(s) 619
TseFI GTSAC 3 cut(s) 116, 490, 508
TseI GCWGC 1 cut(s) 249
Tsp45I GTSAC 3 cut(s) 116, 490, 508
TspDTI ATGAA 6 cut(s) 68, 189, 424, 732, 768, 840
TspGWI ACGGA 1 cut(s) 328
TspRI CASTG 1 cut(s) 619
Van91I CCANNNNNTGG 1 cut(s) 59
VpaK11BI GGWCC 3 cut(s) 49, 62, 209
XagI CCTNNNNNAGG 2 cut(s) 1019, 1068
XapI RAATTY 1 cut(s) 325
XceI RCATGY 2 cut(s) 445, 460
XcmI CCANNNNNNNNNTGG 1 cut(s) 964
XspI CTAG 1 cut(s) 891
ZrmI AGTACT 1 cut(s) 1169
Zsp2I ATGCAT 1 cut(s) 655
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.