Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr3

Orthogroup ID

OG0008024

Physical Location & Seq

Genomic Coordinates Reverse (-)

4684579 .. 4686372

Gene Structure 1794 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom03g05920.6

Sequence Viewer

CDS Protein Promoter (2k)

Length: 729 bp

ATGATATTGCTGAACAAAGTTGTTCTCTCCGGTTACAACTTCAATGCAGGCGTGTCATTGATGTTTTATCAAGTATGTATTTACGTAAACATAGCAATGGTAACCATTCTGAAGAATGTGACAAATATTTTAACAGCACTTGGAGAATTGTATTTGTTCCGGAAACATCAGAATCAGAAAGTGTGGACTGCCATGTTTTTTATGATTATCTCTGCTATCAGCAGTGGCATTACAGATATCTCCTTCGATACAGTAGGTTACGCATGGCAGCTTTCAAACTGCGTACTAACAGCAAGCTACTCAGTAAGTAGTAGTCTCACTCTACGGCGAGTCATGGATGAAGCAAAGAAGTACACAAGATCTGGATCCCTCAACGAAGTTTCAATGGTCTTGCTGAACAATTTGTTATCTCTACCTTTCGCTGCGCTTTTGATTATTCTGTTTGATGAATGGGAATACGTACTGAACGTAGATGTGATTAAATTGCCAATGTTTTGGGTCGTTGCAACGGCTAGTGGATTTCTTGGACTTGCCATCAGCTTCACCTCGATGTGGTTTTTGCATCAAACAGGCCCGACCACCTACAGTCTCGTCGGTTCCTTAAACAAAATTCCAATCTCTCTCGCTGGTTTAGTCCTTTTCAAAGTGCCTCTTAGTCTACCAAACCTCTTCAGCATACTATTTGGTTTATTCGCCGGAGTATTCTTTGCCAGGGCCAAAATGTCCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

TPT

Protein Analysis

243

Amino Acids

26.9

Weight (kDa)

9.23

Isoelectric Point (pI)

25.27

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0008024)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G13650 AT2G13650
fragaria_vesca	FvH4_3g38300 FvH4_3g38300
malus_domestica	MD03G1073200.v1.1 MD11G1079100.v1.1
prunus_persica	Prupe.6G059800_v2.0.a1 Prupe.6G059800_v2.0.a1 Prupe.6G059800_v2.0.a1 Prupe.6G059800_v2.0.a1 Prupe.6G059800_v2.0.a1
pyrus_communis	pycom03g05920
rosa_chinensis	RchiOBHm_Chr5g0068881
rosa_laevigata	RLG00000036016
rosa_multiflora	Rmu_sc0006027.1_g000010
rosa_roxburghii	Rroxscaffold_1G00011920
rosa_rugosa	Rorug05G0394100.1 Rorug05G0394200 Rorug05G0394200
rosa_samantha	Rh5AG451200 Rh5BG469600 Rh5CG492300 Rh5DG482900
rosa_wichuraiana	Rw5G042110

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	658
AccIII	TCCGGA	1 cut(s)	159
AclWI	GGATC	2 cut(s)	360, 373
AcsI	RAATTY	1 cut(s)	609
AcuI	CTGAAG	2 cut(s)	131, 655
AfaI	GTAC	3 cut(s)	285, 353, 462
AfiI	CCNNNNNNNGG	1 cut(s)	552
AgsI	TTSAA	4 cut(s)	43, 276, 384, 643
AjnI	CCWGG	1 cut(s)	710
AluBI	AGCT	3 cut(s)	271, 297, 540
AluI	AGCT	3 cut(s)	271, 297, 540
Alw26I	GTCTC	2 cut(s)	320, 593
AlwI	GGATC	2 cut(s)	360, 373
Aor13HI	TCCGGA	1 cut(s)	159
AoxI	GGCC	2 cut(s)	571, 714
ApeKI	GCWGC	2 cut(s)	268, 422
ApoI	RAATTY	1 cut(s)	609
AspLEI	GCGC	1 cut(s)	427
AspS9I	GGNCC	2 cut(s)	572, 714
AsuHPI	GGTGA	1 cut(s)	535
BamHI	GGATCC	1 cut(s)	365
BbvI	GCAGC	2 cut(s)	280, 409
BccI	CCATC	1 cut(s)	542
BceAI	ACGGC	2 cut(s)	341, 525
BciT130I	CCWGG	1 cut(s)	712
BcoDI	GTCTC	2 cut(s)	320, 593
BfaI	CTAG	1 cut(s)	513
BfmI	CTRYAG	1 cut(s)	583
BglII	AGATCT	1 cut(s)	359
BisI	GCNGC	2 cut(s)	269, 423
BlsI	GCNGC	2 cut(s)	270, 424
Bme1390I	CCNGG	1 cut(s)	712
BmgT120I	GGNCC	2 cut(s)	572, 714
BmiI	GGNNCC	2 cut(s)	367, 598
BmrFI	CCNGG	1 cut(s)	712
BmsI	GCATC	1 cut(s)	571
BsaAI	YACGTR	2 cut(s)	85, 460
BsaBI	GATNNNNATC	1 cut(s)	364
BsaJI	CCNNGG	1 cut(s)	711
BsaWI	WCCGGW	2 cut(s)	29, 159
Bsc4I	CCNNNNNNNGG	1 cut(s)	552
Bse3DI	GCAATG	1 cut(s)	102
Bse8I	GATNNNNATC	1 cut(s)	364
BseAI	TCCGGA	1 cut(s)	159
BseBI	CCWGG	1 cut(s)	712
BseDI	CCNNGG	1 cut(s)	711
BseGI	GGATG	1 cut(s)	343
BseJI	GATNNNNATC	1 cut(s)	364
BseLI	CCNNNNNNNGG	1 cut(s)	552
BseMI	GCAATG	1 cut(s)	102
BseMII	CTCAG	1 cut(s)	315
BseXI	GCAGC	2 cut(s)	280, 409
BshFI	GGCC	2 cut(s)	573, 716
BsiSI	CCGG	3 cut(s)	30, 160, 696
BslI	CCNNNNNNNGG	1 cut(s)	552
BsmAI	GTCTC	2 cut(s)	320, 593
BsnI	GGCC	2 cut(s)	573, 716
Bsp13I	TCCGGA	1 cut(s)	159
Bsp143I	GATC	2 cut(s)	359, 365
BspANI	GGCC	2 cut(s)	573, 716
BspCNI	CTCAG	1 cut(s)	314
BspEI	TCCGGA	1 cut(s)	159
BspLI	GGNNCC	2 cut(s)	367, 598
BspPI	GGATC	2 cut(s)	360, 373
BsrDI	GCAATG	1 cut(s)	102
BssECI	CCNNGG	1 cut(s)	711
BssMI	GATC	2 cut(s)	359, 365
Bst2UI	CCWGG	1 cut(s)	712
Bst4CI	ACNGT	2 cut(s)	253, 587
Bst6I	CTCTTC	1 cut(s)	674
BstBAI	YACGTR	2 cut(s)	85, 460
BstC8I	GCNNGC	2 cut(s)	49, 295
BstDEI	CTNAG	2 cut(s)	301, 653
BstEII	GGTNACC	1 cut(s)	100
BstF5I	GGATG	1 cut(s)	343
BstHHI	GCGC	1 cut(s)	427
BstKTI	GATC	2 cut(s)	362, 368
BstMAI	GTCTC	2 cut(s)	320, 593
BstMBI	GATC	2 cut(s)	359, 365
BstNI	CCWGG	1 cut(s)	712
BstPI	GGTNACC	1 cut(s)	100
BstSCI	CCNGG	1 cut(s)	710
BstSFI	CTRYAG	1 cut(s)	583
BstSNI	TACGTA	2 cut(s)	85, 460
BstV1I	GCAGC	2 cut(s)	280, 409
BstX2I	RGATCY	2 cut(s)	359, 365
BstXI	CCANNNNNNTGG	1 cut(s)	495
BstYI	RGATCY	2 cut(s)	359, 365
BsuRI	GGCC	2 cut(s)	573, 716
BtsCI	GGATG	1 cut(s)	343
BtsI	GCAGTG	1 cut(s)	229
BtsIMutI	CAGTG	1 cut(s)	229
Cac8I	GCNNGC	2 cut(s)	49, 295
CfoI	GCGC	1 cut(s)	427
Cfr13I	GGNCC	2 cut(s)	572, 714
Csp6I	GTAC	3 cut(s)	284, 352, 461
CviAII	CATG	3 cut(s)	193, 264, 334
CviJI	RGCY	6 cut(s)	271, 297, 512, 540, 573, 716
CviKI_1	RGCY	6 cut(s)	271, 297, 512, 540, 573, 716
CviQI	GTAC	3 cut(s)	284, 352, 461
DdeI	CTNAG	2 cut(s)	301, 653
DpnI	GATC	2 cut(s)	361, 367
DpnII	GATC	2 cut(s)	359, 365
Eam1104I	CTCTTC	1 cut(s)	674
EarI	CTCTTC	1 cut(s)	674
Eco105I	TACGTA	2 cut(s)	85, 460
Eco32I	GATATC	1 cut(s)	238
Eco57I	CTGAAG	2 cut(s)	131, 655
Eco91I	GGTNACC	1 cut(s)	100
EcoO65I	GGTNACC	1 cut(s)	100
EcoRII	CCWGG	1 cut(s)	710
EcoRV	GATATC	1 cut(s)	238
FaeI	CATG	3 cut(s)	196, 267, 337
FaiI	YATR	7 cut(s)	76, 92, 194, 203, 265, 335, 677
FalI	AAGNNNNNCTT	2 cut(s)	636, 668
FatI	CATG	3 cut(s)	192, 263, 333
FblI	GTMKAC	1 cut(s)	658
Fnu4HI	GCNGC	2 cut(s)	269, 423
FokI	GGATG	1 cut(s)	350
Fsp4HI	GCNGC	2 cut(s)	269, 423
FspBI	CTAG	1 cut(s)	513
GlaI	GCGC	1 cut(s)	426
GluI	GCNGC	2 cut(s)	269, 423
HaeIII	GGCC	2 cut(s)	573, 716
HapII	CCGG	3 cut(s)	30, 160, 696
HhaI	GCGC	1 cut(s)	427
Hin1II	CATG	3 cut(s)	196, 267, 337
Hin6I	GCGC	1 cut(s)	425
HinP1I	GCGC	1 cut(s)	425
HinfI	GANTC	2 cut(s)	172, 330
HpaII	CCGG	3 cut(s)	30, 160, 696
HphI	GGTGA	1 cut(s)	535
Hpy166II	GTNNAC	4 cut(s)	88, 186, 354, 659
Hpy188I	TCNGA	3 cut(s)	111, 171, 177
Hpy188III	TCNNGA	3 cut(s)	160, 363, 726
Hpy8I	GTNNAC	4 cut(s)	88, 186, 354, 659
Hpy99I	CGWCG	1 cut(s)	596
HpyAV	CCTTC	1 cut(s)	253
HpyCH4III	ACNGT	2 cut(s)	253, 587
HpyCH4IV	ACGT	3 cut(s)	84, 459, 468
HpyCH4V	TGCA	3 cut(s)	47, 506, 562
HpyF3I	CTNAG	2 cut(s)	301, 653
HpySE526I	ACGT	3 cut(s)	84, 459, 468
Hsp92II	CATG	3 cut(s)	196, 267, 337
HspAI	GCGC	1 cut(s)	425
Kpn2I	TCCGGA	1 cut(s)	159
Kzo9I	GATC	2 cut(s)	359, 365
LpnPI	CCDG	9 cut(s)	33, 43, 173, 348, 555, 612, 697, 709, 724
Lsp1109I	GCAGC	2 cut(s)	280, 409
LweI	GCATC	1 cut(s)	571
MaeI	CTAG	1 cut(s)	513
MaeII	ACGT	3 cut(s)	84, 459, 468
MaeIII	GTNAC	4 cut(s)	32, 100, 118, 257
MalI	GATC	2 cut(s)	361, 367
MboI	GATC	2 cut(s)	359, 365
MboII	GAAGA	2 cut(s)	124, 661
MflI	RGATCY	2 cut(s)	359, 365
MluCI	AATT	4 cut(s)	146, 400, 482, 609
MlyI	GAGTC	1 cut(s)	339
MnlI	CCTC	4 cut(s)	380, 556, 660, 677
MroI	TCCGGA	1 cut(s)	159
MseI	TTAA	3 cut(s)	131, 480, 602
MslI	CAYNNNNRTG	2 cut(s)	95, 548
MspI	CCGG	3 cut(s)	30, 160, 696
MspR9I	CCNGG	1 cut(s)	712
MvaI	CCWGG	1 cut(s)	712
NdeII	GATC	2 cut(s)	359, 365
NlaIII	CATG	3 cut(s)	196, 267, 337
NlaIV	GGNNCC	2 cut(s)	367, 598
NmuCI	GTSAC	1 cut(s)	118
PcsI	WCGNNNNNNNCGW	1 cut(s)	465
PfeI	GAWTC	1 cut(s)	172
PkrI	GCNGC	2 cut(s)	270, 424
PleI	GAGTC	1 cut(s)	338
PpsI	GAGTC	1 cut(s)	338
Ppu21I	YACGTR	2 cut(s)	85, 460
Psp6I	CCWGG	1 cut(s)	710
PspEI	GGTNACC	1 cut(s)	100
PspGI	CCWGG	1 cut(s)	710
PspN4I	GGNNCC	2 cut(s)	367, 598
PspPI	GGNCC	2 cut(s)	572, 714
PsuI	RGATCY	2 cut(s)	359, 365
RsaI	GTAC	3 cut(s)	285, 353, 462
RsaNI	GTAC	3 cut(s)	284, 352, 461
RseI	CAYNNNNRTG	2 cut(s)	95, 548
SaqAI	TTAA	3 cut(s)	131, 480, 602
SatI	GCNGC	2 cut(s)	269, 423
Sau3AI	GATC	2 cut(s)	359, 365
Sau96I	GGNCC	2 cut(s)	572, 714
SchI	GAGTC	1 cut(s)	339
ScrFI	CCNGG	1 cut(s)	712
SfaNI	GCATC	1 cut(s)	571
SfcI	CTRYAG	1 cut(s)	583
SmiMI	CAYNNNNRTG	2 cut(s)	95, 548
SnaBI	TACGTA	2 cut(s)	85, 460
Sse9I	AATT	4 cut(s)	146, 400, 482, 609
SspI	AATATT	1 cut(s)	127
SspMI	CTAG	1 cut(s)	513
StyD4I	CCNGG	1 cut(s)	710
TaaI	ACNGT	2 cut(s)	253, 587
TaiI	ACGT	3 cut(s)	87, 462, 471
TaqI	TCGA	2 cut(s)	246, 548
TasI	AATT	4 cut(s)	146, 400, 482, 609
TatI	WGTACW	1 cut(s)	351
TfiI	GAWTC	1 cut(s)	172
Tru1I	TTAA	3 cut(s)	131, 480, 602
Tru9I	TTAA	3 cut(s)	131, 480, 602
TscAI	CASTG	1 cut(s)	229
TseFI	GTSAC	1 cut(s)	118
TseI	GCWGC	2 cut(s)	268, 422
Tsp45I	GTSAC	1 cut(s)	118
TspDTI	ATGAA	2 cut(s)	354, 462
TspRI	CASTG	1 cut(s)	229
XapI	RAATTY	1 cut(s)	609
XmiI	GTMKAC	1 cut(s)	658
XspI	CTAG	1 cut(s)	513

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.