FvH4_3g38990

phosphatase 2c

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb3
OG0011762
Physical Location & Seq
Forward (+)
33233292 .. 33235634
2343 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_3g38990.t1

Sequence Viewer

Length: 1143 bp
ATGTCGTGCTCCGTCGCGGTGTCGAACTCGCCGGTATTTTCACCGCCGCCGTCTCGGTTCTGCAACAAGACCTCCATGATCTCCCCACCTCCCGAAACCCTAAGCCTGGCGCACCTTAAACAACAGCCCTCGCAGCAATCTTCGTCTTCGCCGAATTCGGCTCCGCCGTCGCCGTTCCGTCTCCAGATTCCGAAGTCTCTGAGTACGTTATCGGCTTCAGTTGCTGGACCGTCGTCTCCGGTGACGCAATTGAAGAGGAAGCGGCCGGCGAAGCTTTGCATTCCGATTGTATCGACCGGATTCGGGGCTGCTCCGGCGATGCCGTGTGCGGCGGCGCGGAGAGAGCTGGTTGAGGAAGATAGAGAAGGATACTACTCTGTGTATTGTAAGAAAGGGAGGAGAGAGGCTATGGAGGATCGGTACTCGGCCACTCTCAATCTTCAAGGTGATCCCAAACAGGCGTTTTTCGGTGTATTTGATGGGCATGGAGGTGCAAAAGCTGCTGAATTTGCGGCTCAGAACTTGGGAAAGAATATTTTAGATGAAGTTGTGAGGAGGGATGACTACGGTAATTTTAAGGAATCTGTCAAGCATGGTTACATGAATACAGATTCGGATTTTCTCAAAGAGGATTCCAGTGGTGGATCGTGCTGTGTGACAGCTTTGATCAGGAACGGAACCCTTGTTGTGTCCAATGCTGGCGATTGCCGCGCTGTAATGAGCAGAGGAGGTGCTGCGGAGGCTCTCACATATGATCATCGACCGTCAAGAGATGATGAAAGGACCAGAATTGAGAACTTGGGTGGCTATGTTGATATGTGTCATGGTACATGGAGAATTCAGGGATGTCTAGCTGTATCAAGAGGAATTGGAGATGGACACCTAAAAAAATACGTAACAGCAGAGCCAGAGAGTCAAGTCCTTAGACTCAAACCAGAGCATGAGTTCGTAATCTTGGCTTCAGATGGATTATGGGATAAGGTTAGCAACCAAGAAGCAGTGGATATTCTTCGACCTTCATGCTTAAGCATTGATCGCCAACAACCCCTATTGGCATGTAAAAAGTTGGTAGATTTGTCTGTATCACGAGGCTCCCACGATGATGTTAGTGTGATGGTAGTCCAACTGGGGAGCTACATATGA

Protein Analysis

381

Amino Acids

41.17

Weight (kDa)

8.2

Isoelectric Point (pI)

59.5

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PP2C PF00481 127 - 369 1.3e-61 Protein phosphatase 2C
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0011762)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G34120
fragaria_vesca FvH4_3g38990 FvH4_3g38990 FvH4_3g38990
malus_domestica MD03G1065600.v1.1 MD11G1070500.v1.1
prunus_persica Prupe.6G054500_v2.0.a1
pyrus_communis pycom03g05260 pycom11g05910
rosa_chinensis RchiOBHm_Chr5g0070291
rosa_laevigata RLG00000036123
rosa_multiflora Rmu_sc0009590.1_g000002
rosa_roxburghii Rroxscaffold_1G00010860
rosa_rugosa Rorug05G0404900
rosa_samantha Rh5AG460100 Rh5BG478700 Rh5CG502900 Rh5DG490700
rosa_wichuraiana Rw5G042910

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 3 cut(s) 17, 337, 711
AclWI GGATC 3 cut(s) 423, 443, 652
AcoI YGGCCR 2 cut(s) 263, 426
AcsI RAATTY 3 cut(s) 154, 506, 837
AcuI CTGAAG 2 cut(s) 201, 945
AfaI GTAC 3 cut(s) 205, 422, 829
AfiI CCNNNNNNNGG 2 cut(s) 106, 303
AflII CTTAAG 1 cut(s) 1024
AgsI TTSAA 2 cut(s) 253, 443
AjnI CCWGG 1 cut(s) 105
AluBI AGCT 6 cut(s) 274, 346, 500, 662, 854, 1134
AluI AGCT 6 cut(s) 274, 346, 500, 662, 854, 1134
Alw21I GWGCWC 1 cut(s) 11
Alw26I GTCTC 4 cut(s) 57, 185, 201, 240
AlwI GGATC 3 cut(s) 423, 443, 652
AlwNI CAGNNNCTG 1 cut(s) 224
AoxI GGCC 2 cut(s) 263, 426
ApeKI GCWGC 4 cut(s) 133, 308, 500, 734
ApoI RAATTY 3 cut(s) 154, 506, 837
AspLEI GCGC 3 cut(s) 112, 337, 713
AspS9I GGNCC 2 cut(s) 227, 783
AsuHPI GGTGA 3 cut(s) 33, 253, 458
AvaII GGWCC 2 cut(s) 227, 783
BauI CACGAG 1 cut(s) 1086
BbsI GAAGAC 1 cut(s) 138
Bbv12I GWGCWC 1 cut(s) 11
BbvI GCAGC 4 cut(s) 145, 295, 487, 721
BccI CCATC 4 cut(s) 473, 869, 959, 1108
BceAI ACGGC 4 cut(s) 34, 151, 157, 307
BcgI CGANNNNNNTGC 2 cut(s) 1002, 1036
BciT130I CCWGG 1 cut(s) 107
BciVI GTATCC 1 cut(s) 362
BclI TGATCA 2 cut(s) 666, 754
BcoDI GTCTC 4 cut(s) 57, 185, 201, 240
BfaI CTAG 1 cut(s) 851
BfrI CTTAAG 1 cut(s) 1024
BfuI GTATCC 1 cut(s) 362
Bme1390I CCNGG 1 cut(s) 107
Bme18I GGWCC 2 cut(s) 227, 783
BmgT120I GGNCC 2 cut(s) 227, 783
BmiI GGNNCC 3 cut(s) 162, 679, 1093
BmrFI CCNGG 1 cut(s) 107
BmrI ACTGGG 1 cut(s) 1136
BmsI GCATC 1 cut(s) 309
BmuI ACTGGG 1 cut(s) 1136
BoxI GACNNNNGTC 1 cut(s) 232
BpiI GAAGAC 1 cut(s) 138
BpmI CTGGAG 1 cut(s) 167
Bpu10I CCTNAGC 1 cut(s) 101
BsaAI YACGTR 1 cut(s) 895
BsaWI WCCGGW 2 cut(s) 238, 296
BsaXI ACNNNNNCTCC 4 cut(s) 56, 86, 404, 434
Bsc4I CCNNNNNNNGG 2 cut(s) 106, 303
Bse118I RCCGGY 2 cut(s) 31, 265
Bse1I ACTGG 2 cut(s) 636, 1131
BseBI CCWGG 1 cut(s) 107
BseGI GGATG 2 cut(s) 565, 851
BseLI CCNNNNNNNGG 2 cut(s) 106, 303
BseMII CTCAG 2 cut(s) 191, 530
BseNI ACTGG 2 cut(s) 636, 1131
BseRI GAGGAG 3 cut(s) 412, 568, 741
BseX3I CGGCCG 1 cut(s) 263
BseXI GCAGC 4 cut(s) 145, 295, 487, 721
Bsh1236I CGCG 3 cut(s) 17, 337, 711
Bsh1285I CGRYCG 3 cut(s) 266, 297, 764
BshFI GGCC 2 cut(s) 265, 428
BsiEI CGRYCG 3 cut(s) 266, 297, 764
BsiHKAI GWGCWC 1 cut(s) 11
BsiSI CCGG 5 cut(s) 32, 239, 266, 297, 314
BslI CCNNNNNNNGG 2 cut(s) 106, 303
BsmAI GTCTC 4 cut(s) 57, 185, 201, 240
BsmBI CGTCTC 3 cut(s) 57, 185, 240
BsmI GAATGC 1 cut(s) 279
BsnI GGCC 2 cut(s) 265, 428
Bsp1286I GDGCHC 1 cut(s) 11
Bsp143I GATC 7 cut(s) 78, 415, 448, 644, 666, 754, 1033
BspANI GGCC 2 cut(s) 265, 428
BspCNI CTCAG 2 cut(s) 192, 529
BspFNI CGCG 3 cut(s) 17, 337, 711
BspLI GGNNCC 3 cut(s) 162, 679, 1093
BspPI GGATC 3 cut(s) 423, 443, 652
BspTI CTTAAG 1 cut(s) 1024
BsrFI RCCGGY 2 cut(s) 31, 265
BsrI ACTGG 2 cut(s) 636, 1131
BssAI RCCGGY 2 cut(s) 31, 265
BssMI GATC 7 cut(s) 78, 415, 448, 644, 666, 754, 1033
BssSI CACGAG 1 cut(s) 1086
Bst2BI CACGAG 1 cut(s) 1086
Bst2UI CCWGG 1 cut(s) 107
Bst4CI ACNGT 3 cut(s) 231, 569, 765
Bst6I CTCTTC 1 cut(s) 248
BstAFI CTTAAG 1 cut(s) 1024
BstAPI GCANNNNNTGC 1 cut(s) 500
BstBAI YACGTR 1 cut(s) 895
BstC8I GCNNGC 2 cut(s) 267, 700
BstDEI CTNAG 4 cut(s) 101, 200, 516, 923
BstF5I GGATG 2 cut(s) 565, 851
BstFNI CGCG 3 cut(s) 17, 337, 711
BstHHI GCGC 3 cut(s) 112, 337, 713
BstKTI GATC 7 cut(s) 81, 418, 451, 647, 669, 757, 1036
BstMAI GTCTC 4 cut(s) 57, 185, 201, 240
BstMBI GATC 7 cut(s) 78, 415, 448, 644, 666, 754, 1033
BstMCI CGRYCG 3 cut(s) 266, 297, 764
BstNI CCWGG 1 cut(s) 107
BstNSI RCATGY 1 cut(s) 1059
BstPAI GACNNNNGTC 1 cut(s) 232
BstSCI CCNGG 1 cut(s) 105
BstSNI TACGTA 1 cut(s) 895
BstUI CGCG 3 cut(s) 17, 337, 711
BstV1I GCAGC 4 cut(s) 145, 295, 487, 721
BstV2I GAAGAC 1 cut(s) 138
BstZI CGGCCG 1 cut(s) 263
BsuI GTATCC 1 cut(s) 362
BsuRI GGCC 2 cut(s) 265, 428
BtgZI GCGATG 1 cut(s) 332
BtsCI GGATG 2 cut(s) 565, 851
BtsI GCAGTG 1 cut(s) 1005
BtsIMutI CAGTG 2 cut(s) 643, 1005
Cac8I GCNNGC 2 cut(s) 267, 700
CaiI CAGNNNCTG 1 cut(s) 224
CfoI GCGC 3 cut(s) 112, 337, 713
Cfr10I RCCGGY 2 cut(s) 31, 265
Cfr13I GGNCC 2 cut(s) 227, 783
CseI GACGC 1 cut(s) 253
Csp6I GTAC 3 cut(s) 204, 421, 828
CviAII CATG 9 cut(s) 76, 485, 593, 601, 824, 831, 941, 1020, 1056
CviQI GTAC 3 cut(s) 204, 421, 828
DdeI CTNAG 4 cut(s) 101, 200, 516, 923
DpnI GATC 7 cut(s) 80, 417, 450, 646, 668, 756, 1035
DpnII GATC 7 cut(s) 78, 415, 448, 644, 666, 754, 1033
EaeI YGGCCR 2 cut(s) 263, 426
EagI CGGCCG 1 cut(s) 263
Eam1104I CTCTTC 1 cut(s) 248
EarI CTCTTC 1 cut(s) 248
EciI GGCGGA 1 cut(s) 153
EclXI CGGCCG 1 cut(s) 263
Eco105I TACGTA 1 cut(s) 895
Eco47I GGWCC 2 cut(s) 227, 783
Eco52I CGGCCG 1 cut(s) 263
Eco57I CTGAAG 2 cut(s) 201, 945
EcoRI GAATTC 2 cut(s) 154, 837
EcoRII CCWGG 1 cut(s) 105
Esp3I CGTCTC 3 cut(s) 57, 185, 240
FaeI CATG 9 cut(s) 79, 488, 596, 604, 827, 834, 944, 1023, 1059
FatI CATG 9 cut(s) 75, 484, 592, 600, 823, 830, 940, 1019, 1055
FauNDI CATATG 2 cut(s) 751, 1139
FbaI TGATCA 2 cut(s) 666, 754
FokI GGATG 2 cut(s) 572, 858
FspBI CTAG 1 cut(s) 851
GlaI GCGC 3 cut(s) 111, 336, 712
GsuI CTGGAG 1 cut(s) 167
HaeIII GGCC 2 cut(s) 265, 428
HapII CCGG 5 cut(s) 32, 239, 266, 297, 314
HgaI GACGC 1 cut(s) 253
HhaI GCGC 3 cut(s) 112, 337, 713
Hin1II CATG 9 cut(s) 79, 488, 596, 604, 827, 834, 944, 1023, 1059
Hin6I GCGC 3 cut(s) 110, 335, 711
HinP1I GCGC 3 cut(s) 110, 335, 711
HindIII AAGCTT 1 cut(s) 272
HinfI GANTC 7 cut(s) 187, 300, 581, 611, 632, 913, 927
HpaII CCGG 5 cut(s) 32, 239, 266, 297, 314
HphI GGTGA 3 cut(s) 33, 253, 458
Hpy188I TCNGA 6 cut(s) 192, 201, 285, 519, 616, 964
Hpy188III TCNNGA 6 cut(s) 92, 184, 670, 768, 861, 1086
Hpy99I CGWCG 3 cut(s) 17, 172, 235
HpyAV CCTTC 2 cut(s) 359, 1026
HpyCH4III ACNGT 3 cut(s) 231, 569, 765
HpyCH4IV ACGT 2 cut(s) 206, 894
HpyCH4V TGCA 3 cut(s) 63, 279, 494
HpyF3I CTNAG 4 cut(s) 101, 200, 516, 923
HpySE526I ACGT 2 cut(s) 206, 894
Hsp92II CATG 9 cut(s) 79, 488, 596, 604, 827, 834, 944, 1023, 1059
HspAI GCGC 3 cut(s) 110, 335, 711
KroI GCCGGC 1 cut(s) 265
KroNI GCCGGC 1 cut(s) 267
Ksp22I TGATCA 2 cut(s) 666, 754
Kzo9I GATC 7 cut(s) 78, 415, 448, 644, 666, 754, 1033
LmnI GCTCC 5 cut(s) 14, 166, 316, 1097, 1131
Lsp1109I GCAGC 4 cut(s) 145, 295, 487, 721
LweI GCATC 1 cut(s) 309
MaeI CTAG 1 cut(s) 851
MaeII ACGT 2 cut(s) 206, 894
MaeIII GTNAC 4 cut(s) 241, 596, 655, 895
MalI GATC 7 cut(s) 80, 417, 450, 646, 668, 756, 1035
MboI GATC 7 cut(s) 78, 415, 448, 644, 666, 754, 1033
MboII GAAGA 6 cut(s) 132, 138, 265, 368, 431, 1001
MfeI CAATTG 1 cut(s) 248
MhlI GDGCHC 1 cut(s) 11
MluCI AATT 7 cut(s) 154, 248, 506, 571, 789, 837, 867
MlyI GAGTC 2 cut(s) 921, 922
MroNI GCCGGC 1 cut(s) 265
MseI TTAA 3 cut(s) 117, 576, 1025
MslI CAYNNNNRTG 2 cut(s) 489, 1101
MspCI CTTAAG 1 cut(s) 1024
MspI CCGG 5 cut(s) 32, 239, 266, 297, 314
MspR9I CCNGG 1 cut(s) 107
MunI CAATTG 1 cut(s) 248
Mva1269I GAATGC 1 cut(s) 279
MvaI CCWGG 1 cut(s) 107
MvnI CGCG 3 cut(s) 17, 337, 711
NaeI GCCGGC 1 cut(s) 267
NdeI CATATG 2 cut(s) 751, 1139
NdeII GATC 7 cut(s) 78, 415, 448, 644, 666, 754, 1033
NgoMIV GCCGGC 1 cut(s) 265
NlaIII CATG 9 cut(s) 79, 488, 596, 604, 827, 834, 944, 1023, 1059
NlaIV GGNNCC 3 cut(s) 162, 679, 1093
NmeAIII GCCGAG 1 cut(s) 404
NmuCI GTSAC 2 cut(s) 241, 655
NspI RCATGY 1 cut(s) 1059
PcsI WCGNNNNNNNCGW 2 cut(s) 149, 164
PctI GAATGC 1 cut(s) 279
PdiI GCCGGC 1 cut(s) 267
PfeI GAWTC 5 cut(s) 187, 300, 581, 611, 632
PleI GAGTC 2 cut(s) 921, 921
PpsI GAGTC 2 cut(s) 921, 921
Ppu21I YACGTR 1 cut(s) 895
PshAI GACNNNNGTC 1 cut(s) 232
Psp6I CCWGG 1 cut(s) 105
PspGI CCWGG 1 cut(s) 105
PspN4I GGNNCC 3 cut(s) 162, 679, 1093
PspPI GGNCC 2 cut(s) 227, 783
PstNI CAGNNNCTG 1 cut(s) 224
RsaI GTAC 3 cut(s) 205, 422, 829
RsaNI GTAC 3 cut(s) 204, 421, 828
RseI CAYNNNNRTG 2 cut(s) 489, 1101
SaqAI TTAA 3 cut(s) 117, 576, 1025
Sau3AI GATC 7 cut(s) 78, 415, 448, 644, 666, 754, 1033
Sau96I GGNCC 2 cut(s) 227, 783
SchI GAGTC 2 cut(s) 921, 922
ScrFI CCNGG 1 cut(s) 107
SduI GDGCHC 1 cut(s) 11
SfaNI GCATC 1 cut(s) 309
SinI GGWCC 2 cut(s) 227, 783
SmiMI CAYNNNNRTG 2 cut(s) 489, 1101
SmlI CTYRAG 1 cut(s) 1024
SmoI CTYRAG 1 cut(s) 1024
SnaBI TACGTA 1 cut(s) 895
Sse9I AATT 7 cut(s) 154, 248, 506, 571, 789, 837, 867
SspI AATATT 1 cut(s) 535
SspMI CTAG 1 cut(s) 851
StyD4I CCNGG 1 cut(s) 105
TaaI ACNGT 3 cut(s) 231, 569, 765
TaiI ACGT 2 cut(s) 209, 897
TaqI TCGA 4 cut(s) 23, 293, 760, 1012
TasI AATT 7 cut(s) 154, 248, 506, 571, 789, 837, 867
TauI GCSGC 6 cut(s) 49, 265, 332, 335, 515, 711
TfiI GAWTC 5 cut(s) 187, 300, 581, 611, 632
Tru1I TTAA 3 cut(s) 117, 576, 1025
Tru9I TTAA 3 cut(s) 117, 576, 1025
TscAI CASTG 2 cut(s) 643, 1005
TseFI GTSAC 2 cut(s) 241, 655
TseI GCWGC 4 cut(s) 133, 308, 500, 734
Tsp45I GTSAC 2 cut(s) 241, 655
TspDTI ATGAA 4 cut(s) 558, 617, 792, 1008
TspGWI ACGGA 2 cut(s) 167, 690
TspRI CASTG 2 cut(s) 643, 1005
Vha464I CTTAAG 1 cut(s) 1024
VpaK11BI GGWCC 2 cut(s) 227, 783
XapI RAATTY 3 cut(s) 154, 506, 837
XceI RCATGY 1 cut(s) 1059
XspI CTAG 1 cut(s) 851
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.