RchiOBHm_Chr5g0070291

phosphatase 2c

Basic Information

Type: gene
Biological Identity
rosa_chinensis
5
Physical Location & Seq
Forward (+)
76074570 .. 76076591
2022 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ34554

Sequence Viewer

Length: 1149 bp
ATGTCGTGCTCCGTCGCGGTTTCGAACTCGCCGGTATTTTCACAGCCGCCGTCTCTCTTCTGCAACAAGACCTCCATGATGTCCTCGACTCCCGAAACCCTAAACCTATCGCACCTGAAACAGCAACCGTCGCAGCAATCTTCGTCTTCGCCGAATTCGGCTCCGCCGTCGCCGTCGTCGCCGTTCAGGCTTCGGATTCCGAAGTCTCTGAGTATGCTATCTGCGGTTCCGGGATCTTCGTCTCCGGTGACTCAATTGAAGAGGAAGCGGCCGGCGAAGCTTTGCATTCCGATTGTATCGACTGGATTTGGGGCTGCTCAGGCGACGCCGTCTGCGGCGGCGTGGAGAGAGCTGGTGGAGGAAGATAGAGAAGGGTACTTCTCCGTGTATTGTAAGAAAGGGAGGAGAGAGGCTTTAGAGGATCGTTACTCAGCCACTCTTAATCTACAAGGTGATCCCAAACAGGCGTTTTTCGGTGTATTTGATGGGCATGGAGGTGCAAAAGCTGCTGAATTTGCAGCTCAGAACTTGGGAAAAAACATTTTAGATGAAGTTGTGAGGAGGGACGACGACGATAAATTTGAGGAATCTGTCAAGCATGGTTACCTGAATACAGATTCTGATTTTCTTAAAGAGGATTTCAGCGGTGGATCATGCTGTGTGACAGCTATGATCAGAAACGGAACCCTTGTTGTGTCCAATGCTGGTGATTGCCGTGCTGTAATGAGCAGAGGAGGTGCTGCAGAGGCTCTCACATCTGATCATCGACCGGCAAGGGAAGATGAAAGGACCAGAATTGAGAACTTGGGTGGCTATGTTGATATGTGCCATGGTACTTGGAGGATTCAGGGTTGTCTAGCTGTATCGAGAGGAATTGGAGATGGGCACCTTAAAAAGTTTGTAACAGCAGAGCCAGAGACTCAAGTCCTTAGACTCAAAGCCGAGCATGAGTTCGTAATCATGGCTTCAGATGGATTATGGGATAAGGTTAGCAACCAAGAAGCAGTGGATATTGTTCGACCTTCATGCTTAGGCGTTGATCGACAACAACCCCTTTTGGCGTGTAAAAAGTTGGTAGAACTGTCTGTATCACGAGGCTCGCGCGACGATATTAGTGTGATGGTAGTCCAATTGGGGCGCTACATATGA

Protein Analysis

382

Amino Acids

41.51

Weight (kDa)

7.53

Isoelectric Point (pI)

53.08

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PP2C PF00481 130 - 371 4.2e-61 Protein phosphatase 2C
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Orthologous Genes (Group: OG0011762)

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 885
AccII CGCG 3 cut(s) 17, 1102, 1104
AciI CCGC 8 cut(s) 17, 47, 164, 224, 268, 335, 338, 645
AclWI GGATC 4 cut(s) 241, 429, 449, 658
AcoI YGGCCR 1 cut(s) 269
AcsI RAATTY 3 cut(s) 154, 512, 578
AcuI CTGAAG 1 cut(s) 951
AcyI GRCGYC 1 cut(s) 326
AfaI GTAC 2 cut(s) 377, 835
AgsI TTSAA 1 cut(s) 259
AluBI AGCT 6 cut(s) 280, 352, 506, 521, 668, 860
AluI AGCT 6 cut(s) 280, 352, 506, 521, 668, 860
Alw21I GWGCWC 1 cut(s) 11
Alw26I GTCTC 4 cut(s) 57, 210, 246, 911
AlwI GGATC 4 cut(s) 241, 429, 449, 658
AlwNI CAGNNNCTG 1 cut(s) 620
AoxI GGCC 1 cut(s) 269
ApeKI GCWGC 5 cut(s) 133, 314, 506, 518, 740
ApoI RAATTY 3 cut(s) 154, 512, 578
ArsI GACNNNNNNTTYG 2 cut(s) 563, 595
AspLEI GCGC 2 cut(s) 1104, 1140
AspS9I GGNCC 1 cut(s) 789
AsuC2I CCSGG 1 cut(s) 231
AsuHPI GGTGA 3 cut(s) 259, 464, 719
AsuII TTCGAA 1 cut(s) 23
AvaII GGWCC 1 cut(s) 789
BaeGI GKGCMC 1 cut(s) 888
BanI GGYRCC 1 cut(s) 885
BauI CACGAG 1 cut(s) 1092
BbsI GAAGAC 1 cut(s) 138
Bbv12I GWGCWC 1 cut(s) 11
BbvI GCAGC 5 cut(s) 145, 301, 493, 530, 727
BccI CCATC 4 cut(s) 479, 875, 965, 1114
BceAI ACGGC 6 cut(s) 34, 151, 157, 166, 313, 699
BcgI CGANNNNNNTGC 2 cut(s) 1008, 1042
BclI TGATCA 2 cut(s) 672, 760
BcnI CCSGG 1 cut(s) 231
BcoDI GTCTC 4 cut(s) 57, 210, 246, 911
BfaI CTAG 1 cut(s) 857
BfmI CTRYAG 1 cut(s) 741
BfoI RGCGCY 1 cut(s) 1141
BglI GCCNNNNNGGC 1 cut(s) 187
BisI GCNGC 9 cut(s) 47, 134, 269, 315, 336, 339, 507, 519, 741
BlsI GCNGC 9 cut(s) 48, 135, 270, 316, 337, 340, 508, 520, 742
Bme1390I CCNGG 1 cut(s) 231
Bme18I GGWCC 1 cut(s) 789
BmgT120I GGNCC 1 cut(s) 789
BmiI GGNNCC 4 cut(s) 162, 228, 685, 887
BmrFI CCNGG 1 cut(s) 231
BoxI GACNNNNGTC 1 cut(s) 923
BpiI GAAGAC 1 cut(s) 138
Bpu10I CCTNAGC 2 cut(s) 318, 1030
Bpu14I TTCGAA 1 cut(s) 23
BpuEI CTTGAG 1 cut(s) 906
BpuMI CCSGG 1 cut(s) 231
BsaHI GRCGYC 1 cut(s) 326
BsaJI CCNNGG 1 cut(s) 829
BsaWI WCCGGW 1 cut(s) 244
BsaXI ACNNNNNCTCC 2 cut(s) 56, 86
Bse118I RCCGGY 3 cut(s) 31, 271, 769
Bse1I ACTGG 1 cut(s) 307
BseDI CCNNGG 1 cut(s) 829
BseMII CTCAG 4 cut(s) 200, 332, 444, 536
BseNI ACTGG 1 cut(s) 307
BseRI GAGGAG 3 cut(s) 418, 574, 747
BseSI GKGCMC 1 cut(s) 888
BseX3I CGGCCG 1 cut(s) 269
BseXI GCAGC 5 cut(s) 145, 301, 493, 530, 727
Bsh1236I CGCG 3 cut(s) 17, 1102, 1104
Bsh1285I CGRYCG 2 cut(s) 272, 770
BshFI GGCC 1 cut(s) 271
BshNI GGYRCC 1 cut(s) 885
BsiEI CGRYCG 2 cut(s) 272, 770
BsiHKAI GWGCWC 1 cut(s) 11
BsiSI CCGG 5 cut(s) 32, 230, 245, 272, 770
BslFI GGGAC 1 cut(s) 578
BsmAI GTCTC 4 cut(s) 57, 210, 246, 911
BsmBI CGTCTC 2 cut(s) 57, 246
BsmFI GGGAC 1 cut(s) 578
BsmI GAATGC 1 cut(s) 285
BsnI GGCC 1 cut(s) 271
Bsp119I TTCGAA 1 cut(s) 23
Bsp1286I GDGCHC 2 cut(s) 11, 888
Bsp143I GATC 7 cut(s) 233, 421, 454, 650, 672, 760, 1039
Bsp19I CCATGG 1 cut(s) 829
BspACI CCGC 8 cut(s) 17, 47, 164, 224, 268, 335, 338, 645
BspANI GGCC 1 cut(s) 271
BspCNI CTCAG 4 cut(s) 201, 331, 443, 535
BspFNI CGCG 3 cut(s) 17, 1102, 1104
BspLI GGNNCC 4 cut(s) 162, 228, 685, 887
BspMAI CTGCAG 1 cut(s) 745
BspPI GGATC 4 cut(s) 241, 429, 449, 658
BspT104I TTCGAA 1 cut(s) 23
BspT107I GGYRCC 1 cut(s) 885
BsrFI RCCGGY 3 cut(s) 31, 271, 769
BsrI ACTGG 1 cut(s) 307
BssAI RCCGGY 3 cut(s) 31, 271, 769
BssECI CCNNGG 1 cut(s) 829
BssMI GATC 7 cut(s) 233, 421, 454, 650, 672, 760, 1039
BssNI GRCGYC 1 cut(s) 326
BssSI CACGAG 1 cut(s) 1092
BssT1I CCWWGG 1 cut(s) 829
Bst2BI CACGAG 1 cut(s) 1092
Bst4CI ACNGT 2 cut(s) 129, 1083
Bst6I CTCTTC 2 cut(s) 62, 254
BstACI GRCGYC 1 cut(s) 326
BstAPI GCANNNNNTGC 1 cut(s) 506
BstBI TTCGAA 1 cut(s) 23
BstC8I GCNNGC 2 cut(s) 273, 1100
BstDEI CTNAG 6 cut(s) 209, 318, 430, 522, 929, 1030
BstDSI CCRYGG 1 cut(s) 829
BstEII GGTNACC 1 cut(s) 602
BstFNI CGCG 3 cut(s) 17, 1102, 1104
BstH2I RGCGCY 1 cut(s) 1141
BstHHI GCGC 2 cut(s) 1104, 1140
BstKTI GATC 7 cut(s) 236, 424, 457, 653, 675, 763, 1042
BstMAI GTCTC 4 cut(s) 57, 210, 246, 911
BstMBI GATC 7 cut(s) 233, 421, 454, 650, 672, 760, 1039
BstMCI CGRYCG 2 cut(s) 272, 770
BstMWI GCNNNNNNNGC 8 cut(s) 130, 178, 187, 277, 320, 506, 515, 746
BstPAI GACNNNNGTC 1 cut(s) 923
BstPI GGTNACC 1 cut(s) 602
BstSCI CCNGG 1 cut(s) 229
BstSFI CTRYAG 1 cut(s) 741
BstSLI GKGCMC 1 cut(s) 888
BstUI CGCG 3 cut(s) 17, 1102, 1104
BstV1I GCAGC 5 cut(s) 145, 301, 493, 530, 727
BstV2I GAAGAC 1 cut(s) 138
BstX2I RGATCY 1 cut(s) 233
BstYI RGATCY 1 cut(s) 233
BstZI CGGCCG 1 cut(s) 269
BsuRI GGCC 1 cut(s) 271
BtgI CCRYGG 1 cut(s) 829
BtsI GCAGTG 1 cut(s) 1011
BtsIMutI CAGTG 1 cut(s) 1011
Cac8I GCNNGC 2 cut(s) 273, 1100
CaiI CAGNNNCTG 1 cut(s) 620
CfoI GCGC 2 cut(s) 1104, 1140
Cfr10I RCCGGY 3 cut(s) 31, 271, 769
Cfr13I GGNCC 1 cut(s) 789
CseI GACGC 1 cut(s) 334
Csp6I GTAC 2 cut(s) 376, 834
CviAII CATG 8 cut(s) 76, 491, 599, 654, 830, 947, 961, 1026
CviQI GTAC 2 cut(s) 376, 834
DdeI CTNAG 6 cut(s) 209, 318, 430, 522, 929, 1030
DpnI GATC 7 cut(s) 235, 423, 456, 652, 674, 762, 1041
DpnII GATC 7 cut(s) 233, 421, 454, 650, 672, 760, 1039
EaeI YGGCCR 1 cut(s) 269
EagI CGGCCG 1 cut(s) 269
Eam1104I CTCTTC 2 cut(s) 62, 254
EarI CTCTTC 2 cut(s) 62, 254
EciI GGCGGA 1 cut(s) 153
EclXI CGGCCG 1 cut(s) 269
Eco130I CCWWGG 1 cut(s) 829
Eco47I GGWCC 1 cut(s) 789
Eco52I CGGCCG 1 cut(s) 269
Eco57I CTGAAG 1 cut(s) 951
Eco91I GGTNACC 1 cut(s) 602
EcoO65I GGTNACC 1 cut(s) 602
EcoRI GAATTC 1 cut(s) 154
EcoT14I CCWWGG 1 cut(s) 829
ErhI CCWWGG 1 cut(s) 829
Esp3I CGTCTC 2 cut(s) 57, 246
FaeI CATG 8 cut(s) 79, 494, 602, 657, 833, 950, 964, 1029
FaqI GGGAC 1 cut(s) 578
FatI CATG 8 cut(s) 75, 490, 598, 653, 829, 946, 960, 1025
FauNDI CATATG 1 cut(s) 1145
FbaI TGATCA 2 cut(s) 672, 760
Fnu4HI GCNGC 9 cut(s) 47, 134, 269, 315, 336, 339, 507, 519, 741
Fsp4HI GCNGC 9 cut(s) 47, 134, 269, 315, 336, 339, 507, 519, 741
FspBI CTAG 1 cut(s) 857
GlaI GCGC 2 cut(s) 1103, 1139
GluI GCNGC 9 cut(s) 47, 134, 269, 315, 336, 339, 507, 519, 741
HaeII RGCGCY 1 cut(s) 1141
HaeIII GGCC 1 cut(s) 271
HapII CCGG 5 cut(s) 32, 230, 245, 272, 770
HgaI GACGC 1 cut(s) 334
HhaI GCGC 2 cut(s) 1104, 1140
Hin1I GRCGYC 1 cut(s) 326
Hin1II CATG 8 cut(s) 79, 494, 602, 657, 833, 950, 964, 1029
Hin6I GCGC 2 cut(s) 1102, 1138
HinP1I GCGC 2 cut(s) 1102, 1138
HindIII AAGCTT 1 cut(s) 278
HinfI GANTC 8 cut(s) 88, 196, 250, 587, 617, 844, 919, 933
HpaII CCGG 5 cut(s) 32, 230, 245, 272, 770
HphI GGTGA 3 cut(s) 259, 464, 719
Hpy188I TCNGA 9 cut(s) 195, 201, 210, 291, 525, 622, 677, 760, 970
Hpy188III TCNNGA 3 cut(s) 92, 867, 1092
Hpy99I CGWCG 9 cut(s) 17, 133, 172, 178, 181, 328, 572, 575, 1109
HpyAV CCTTC 2 cut(s) 365, 1032
HpyCH4III ACNGT 2 cut(s) 129, 1083
HpyCH4V TGCA 5 cut(s) 63, 285, 500, 518, 743
HpyF10VI GCNNNNNNNGC 8 cut(s) 130, 178, 187, 277, 320, 506, 515, 746
HpyF3I CTNAG 6 cut(s) 209, 318, 430, 522, 929, 1030
Hsp92I GRCGYC 1 cut(s) 326
Hsp92II CATG 8 cut(s) 79, 494, 602, 657, 833, 950, 964, 1029
HspAI GCGC 2 cut(s) 1102, 1138
KroI GCCGGC 1 cut(s) 271
KroNI GCCGGC 1 cut(s) 273
Ksp22I TGATCA 2 cut(s) 672, 760
Kzo9I GATC 7 cut(s) 233, 421, 454, 650, 672, 760, 1039
LmnI GCTCC 2 cut(s) 14, 166
Lsp1109I GCAGC 5 cut(s) 145, 301, 493, 530, 727
MaeI CTAG 1 cut(s) 857
MaeIII GTNAC 5 cut(s) 247, 425, 602, 661, 901
MalI GATC 7 cut(s) 235, 423, 456, 652, 674, 762, 1041
MboI GATC 7 cut(s) 233, 421, 454, 650, 672, 760, 1039
MboII GAAGA 7 cut(s) 49, 132, 138, 228, 271, 374, 791
MfeI CAATTG 2 cut(s) 254, 1130
MflI RGATCY 1 cut(s) 233
MhlI GDGCHC 2 cut(s) 11, 888
MluCI AATT 7 cut(s) 154, 254, 512, 578, 795, 873, 1130
MlyI GAGTC 4 cut(s) 82, 244, 913, 927
MroNI GCCGGC 1 cut(s) 271
MseI TTAA 3 cut(s) 441, 630, 891
MslI CAYNNNNRTG 1 cut(s) 495
MspA1I CMGCKG 1 cut(s) 645
MspI CCGG 5 cut(s) 32, 230, 245, 272, 770
MspR9I CCNGG 1 cut(s) 231
MunI CAATTG 2 cut(s) 254, 1130
Mva1269I GAATGC 1 cut(s) 285
MvnI CGCG 3 cut(s) 17, 1102, 1104
MwoI GCNNNNNNNGC 8 cut(s) 130, 178, 187, 277, 320, 506, 515, 746
NaeI GCCGGC 1 cut(s) 273
NciI CCSGG 1 cut(s) 231
NcoI CCATGG 1 cut(s) 829
NdeI CATATG 1 cut(s) 1145
NdeII GATC 7 cut(s) 233, 421, 454, 650, 672, 760, 1039
NgoMIV GCCGGC 1 cut(s) 271
NlaIII CATG 8 cut(s) 79, 494, 602, 657, 833, 950, 964, 1029
NlaIV GGNNCC 4 cut(s) 162, 228, 685, 887
NmeAIII GCCGAG 1 cut(s) 967
NmuCI GTSAC 2 cut(s) 247, 661
NspV TTCGAA 1 cut(s) 23
PcsI WCGNNNNNNNCGW 2 cut(s) 149, 164
PctI GAATGC 1 cut(s) 285
PdiI GCCGGC 1 cut(s) 273
PfeI GAWTC 4 cut(s) 196, 587, 617, 844
PflFI GACNNNGTC 1 cut(s) 328
PfoI TCCNGGA 1 cut(s) 229
PkrI GCNGC 9 cut(s) 48, 135, 270, 316, 337, 340, 508, 520, 742
PleI GAGTC 4 cut(s) 82, 244, 913, 927
PpsI GAGTC 4 cut(s) 82, 244, 913, 927
PshAI GACNNNNGTC 1 cut(s) 923
PspEI GGTNACC 1 cut(s) 602
PspN4I GGNNCC 4 cut(s) 162, 228, 685, 887
PspPI GGNCC 1 cut(s) 789
PstI CTGCAG 1 cut(s) 745
PstNI CAGNNNCTG 1 cut(s) 620
PsuI RGATCY 1 cut(s) 233
PsyI GACNNNGTC 1 cut(s) 328
RsaI GTAC 2 cut(s) 377, 835
RsaNI GTAC 2 cut(s) 376, 834
RseI CAYNNNNRTG 1 cut(s) 495
SaqAI TTAA 3 cut(s) 441, 630, 891
SatI GCNGC 9 cut(s) 47, 134, 269, 315, 336, 339, 507, 519, 741
Sau3AI GATC 7 cut(s) 233, 421, 454, 650, 672, 760, 1039
Sau96I GGNCC 1 cut(s) 789
SchI GAGTC 4 cut(s) 82, 244, 913, 927
ScrFI CCNGG 1 cut(s) 231
SduI GDGCHC 2 cut(s) 11, 888
SfcI CTRYAG 1 cut(s) 741
SfuI TTCGAA 1 cut(s) 23
SinI GGWCC 1 cut(s) 789
SmiMI CAYNNNNRTG 1 cut(s) 495
SmlI CTYRAG 1 cut(s) 921
SmoI CTYRAG 1 cut(s) 921
Sse9I AATT 7 cut(s) 154, 254, 512, 578, 795, 873, 1130
SsiI CCGC 8 cut(s) 17, 47, 164, 224, 268, 335, 338, 645
SspMI CTAG 1 cut(s) 857
StyD4I CCNGG 1 cut(s) 229
StyI CCWWGG 1 cut(s) 829
TaaI ACNGT 2 cut(s) 129, 1083
TaqI TCGA 7 cut(s) 23, 86, 299, 766, 866, 1018, 1042
TasI AATT 7 cut(s) 154, 254, 512, 578, 795, 873, 1130
TauI GCSGC 4 cut(s) 49, 271, 338, 341
TfiI GAWTC 4 cut(s) 196, 587, 617, 844
Tru1I TTAA 3 cut(s) 441, 630, 891
Tru9I TTAA 3 cut(s) 441, 630, 891
TscAI CASTG 1 cut(s) 1011
TseFI GTSAC 2 cut(s) 247, 661
TseI GCWGC 5 cut(s) 133, 314, 506, 518, 740
Tsp45I GTSAC 2 cut(s) 247, 661
TspDTI ATGAA 3 cut(s) 564, 798, 1014
TspGWI ACGGA 2 cut(s) 373, 696
TspRI CASTG 1 cut(s) 1011
Tth111I GACNNNGTC 1 cut(s) 328
VpaK11BI GGWCC 1 cut(s) 789
XapI RAATTY 3 cut(s) 154, 512, 578
XspI CTAG 1 cut(s) 857
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.