Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr5

Orthogroup ID

OG0011762

Physical Location & Seq

Genomic Coordinates Forward (+)

75038541 .. 75040574

Gene Structure 2034 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw5G042910.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 999 bp

ATGTCGTGCTCCGTCGCGGTGTCGAACTCGCCGGTATTTTCACCACCGCCGTCTCTCTTCTGCAACAAGACCTCCATGATCTCCTCGACTCCCGAAACCCTAAACCTATCGCACCTGAAACAGCAACCGTCGCAGCAATCTTCATCTTCGCCGAATTCGGCTCCGCCTTCGCCGTCGTCATCGTCGCCGTTCAGGCTTCGGATTCCGAAGTCTCTGAGTATGCTATCTGCGGTTCCCGGATCTTCGTCTCCGGTGACGCAATTGAAGAGGAAGCGGCCGGCGAAGCTTTGCATTCCGATTGTATCGACTGGATTTGGGGCTGCTCAGGCGACGCCGTCTGCGGCGGCGTGGAGAGAGCTGGTGGAGGAAGATAGAGAAGGGTACTTCTCCGTGTATTGTAAGAAAGGGAGGAGAGAGGCTTTAGAGGATCGGTACTCAGCCACTCTTAATCTTCAAGGTGATCCCAAACAGGCGTTTTTCGGTGTATTTGATGGGCATGGAGGTGCAAAAGCTGCTGAATTTGCAGCTCAGAACTTGGGAAAAAACATTTTAGATGAAGTTGTGAGGAGGGACGACGACGATAAATTTGAGGAATCCGTCAAGCATGGTTACCTGAATACAGATTCTGATTTTCTTAAAGAGGATTTCAGCGGTGGATCATGCTGTGTGACAGCTATGATCAGAAACGGAACCCTTGTTGTGTCCAATGCTGGTGATTGCCGTGCTGTAATGAGCAGAGGAGGTGCTGCAGAGGCTCTCACATCTGATCATCGACCGGCAAGGGAAGATGAAAGGACCAGAATTGAGAACTTGGGTGGCTATGTTGATATGTGCCACGGTACTTGGAGGATTCAGGGTTGTCTAGCTGTATCGAGAGGAATTGGAGATGGGCACCTTAAAAAGTTTGTAACAGCAGAGCCAGAGACTCGAGTCCTTAGACTCAAAGCCGAGCATGAGTTCGTAATCATGGCTTCAGATGGATTATGGGATAAGGTATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0003674 GO:0003824 GO:0004721 GO:0004722 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006464 GO:0006470 GO:0006793 GO:0006796 GO:0006807 GO:0006950 GO:0006952 GO:0007154 GO:0007165 GO:0008150 GO:0008152 GO:0009536 GO:0009605 GO:0009607 GO:0009611 GO:0009620 GO:0009719 GO:0009725 GO:0009737 GO:0009738 GO:0009755 GO:0009987 GO:0010033 GO:0016311 GO:0016787 GO:0016788 GO:0016791 GO:0019538 GO:0023052 GO:0032870 GO:0033993 GO:0036211 GO:0042221 GO:0042578 GO:0043170 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044444 GO:0044464 GO:0050789 GO:0050794 GO:0050832 GO:0050896 GO:0051704 GO:0051707 GO:0051716 GO:0065007 GO:0070887 GO:0071215 GO:0071229 GO:0071310 GO:0071396 GO:0071495 GO:0071704 GO:0097305 GO:0097306 GO:0098542 GO:0140096 GO:1901564 GO:1901700 GO:1901701

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PP2C

Protein Analysis

332

Amino Acids

35.94

Weight (kDa)

7.57

Isoelectric Point (pI)

55.52

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PP2C	PF00481	132 - 332	1.1e-51	Protein phosphatase 2C

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0011762)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G34120
fragaria_vesca	FvH4_3g38990 FvH4_3g38990 FvH4_3g38990
malus_domestica	MD03G1065600.v1.1 MD11G1070500.v1.1
prunus_persica	Prupe.6G054500_v2.0.a1
pyrus_communis	pycom03g05260 pycom11g05910
rosa_chinensis	RchiOBHm_Chr5g0070291
rosa_laevigata	RLG00000036123
rosa_multiflora	Rmu_sc0009590.1_g000002
rosa_roxburghii	Rroxscaffold_1G00010860
rosa_rugosa	Rorug05G0404900
rosa_samantha	Rh5AG460100 Rh5BG478700 Rh5CG502900 Rh5DG490700
rosa_wichuraiana	Rw5G042910

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	891
AccII	CGCG	1 cut(s)	17
AciI	CCGC	8 cut(s)	17, 47, 164, 230, 274, 341, 344, 651
AclWI	GGATC	4 cut(s)	247, 435, 455, 664
AcoI	YGGCCR	1 cut(s)	275
AcsI	RAATTY	3 cut(s)	154, 518, 584
AcuI	CTGAAG	1 cut(s)	957
AcyI	GRCGYC	1 cut(s)	332
AfaI	GTAC	3 cut(s)	383, 434, 841
AgsI	TTSAA	2 cut(s)	265, 455
AluBI	AGCT	6 cut(s)	286, 358, 512, 527, 674, 866
AluI	AGCT	6 cut(s)	286, 358, 512, 527, 674, 866
Alw21I	GWGCWC	1 cut(s)	11
Alw26I	GTCTC	4 cut(s)	57, 216, 252, 917
AlwI	GGATC	4 cut(s)	247, 435, 455, 664
AlwNI	CAGNNNCTG	1 cut(s)	626
Ama87I	CYCGRG	1 cut(s)	927
AoxI	GGCC	1 cut(s)	275
ApeKI	GCWGC	5 cut(s)	133, 320, 512, 524, 746
ApoI	RAATTY	3 cut(s)	154, 518, 584
ArsI	GACNNNNNNTTYG	2 cut(s)	569, 601
AspS9I	GGNCC	1 cut(s)	795
AsuC2I	CCSGG	1 cut(s)	237
AsuHPI	GGTGA	4 cut(s)	33, 265, 470, 725
AvaI	CYCGRG	1 cut(s)	927
AvaII	GGWCC	1 cut(s)	795
BaeGI	GKGCMC	1 cut(s)	894
BanI	GGYRCC	1 cut(s)	891
Bbv12I	GWGCWC	1 cut(s)	11
BbvI	GCAGC	5 cut(s)	145, 307, 499, 536, 733
BccI	CCATC	3 cut(s)	485, 881, 971
BceAI	ACGGC	5 cut(s)	34, 157, 172, 319, 705
BclI	TGATCA	2 cut(s)	678, 766
BcnI	CCSGG	1 cut(s)	237
BcoDI	GTCTC	4 cut(s)	57, 216, 252, 917
BfaI	CTAG	1 cut(s)	863
BfmI	CTRYAG	1 cut(s)	747
BglI	GCCNNNNNGGC	1 cut(s)	193
BisI	GCNGC	8 cut(s)	134, 275, 321, 342, 345, 513, 525, 747
BlsI	GCNGC	8 cut(s)	135, 276, 322, 343, 346, 514, 526, 748
Bme1390I	CCNGG	1 cut(s)	237
Bme18I	GGWCC	1 cut(s)	795
BmeT110I	CYCGRG	1 cut(s)	927
BmgT120I	GGNCC	1 cut(s)	795
BmiI	GGNNCC	4 cut(s)	162, 234, 691, 893
BmrFI	CCNGG	1 cut(s)	237
BoxI	GACNNNNGTC	1 cut(s)	929
Bpu10I	CCTNAGC	1 cut(s)	324
BpuMI	CCSGG	1 cut(s)	237
BsaHI	GRCGYC	1 cut(s)	332
BsaJI	CCNNGG	1 cut(s)	835
BsaWI	WCCGGW	1 cut(s)	250
BsaXI	ACNNNNNCTCC	2 cut(s)	56, 86
Bse118I	RCCGGY	3 cut(s)	31, 277, 775
Bse1I	ACTGG	1 cut(s)	313
BseDI	CCNNGG	1 cut(s)	835
BseMII	CTCAG	4 cut(s)	206, 338, 450, 542
BseNI	ACTGG	1 cut(s)	313
BseRI	GAGGAG	4 cut(s)	73, 424, 580, 753
BseSI	GKGCMC	1 cut(s)	894
BseX3I	CGGCCG	1 cut(s)	275
BseXI	GCAGC	5 cut(s)	145, 307, 499, 536, 733
Bsh1236I	CGCG	1 cut(s)	17
Bsh1285I	CGRYCG	2 cut(s)	278, 776
BshFI	GGCC	1 cut(s)	277
BshNI	GGYRCC	1 cut(s)	891
BsiEI	CGRYCG	2 cut(s)	278, 776
BsiHKAI	GWGCWC	1 cut(s)	11
BsiHKCI	CYCGRG	1 cut(s)	927
BsiSI	CCGG	5 cut(s)	32, 237, 251, 278, 776
BslFI	GGGAC	1 cut(s)	584
BsmAI	GTCTC	4 cut(s)	57, 216, 252, 917
BsmBI	CGTCTC	2 cut(s)	57, 252
BsmFI	GGGAC	1 cut(s)	584
BsmI	GAATGC	1 cut(s)	291
BsnI	GGCC	1 cut(s)	277
BsoBI	CYCGRG	1 cut(s)	927
Bsp1286I	GDGCHC	2 cut(s)	11, 894
Bsp143I	GATC	7 cut(s)	78, 239, 427, 460, 656, 678, 766
BspACI	CCGC	8 cut(s)	17, 47, 164, 230, 274, 341, 344, 651
BspANI	GGCC	1 cut(s)	277
BspCNI	CTCAG	4 cut(s)	207, 337, 449, 541
BspFNI	CGCG	1 cut(s)	17
BspLI	GGNNCC	4 cut(s)	162, 234, 691, 893
BspMAI	CTGCAG	1 cut(s)	751
BspPI	GGATC	4 cut(s)	247, 435, 455, 664
BspT107I	GGYRCC	1 cut(s)	891
BsrFI	RCCGGY	3 cut(s)	31, 277, 775
BsrI	ACTGG	1 cut(s)	313
BssAI	RCCGGY	3 cut(s)	31, 277, 775
BssECI	CCNNGG	1 cut(s)	835
BssMI	GATC	7 cut(s)	78, 239, 427, 460, 656, 678, 766
BssNI	GRCGYC	1 cut(s)	332
Bst4CI	ACNGT	2 cut(s)	129, 839
Bst6I	CTCTTC	2 cut(s)	62, 260
BstACI	GRCGYC	1 cut(s)	332
BstAPI	GCANNNNNTGC	1 cut(s)	512
BstC8I	GCNNGC	1 cut(s)	279
BstDEI	CTNAG	5 cut(s)	215, 324, 436, 528, 935
BstDSI	CCRYGG	1 cut(s)	835
BstEII	GGTNACC	1 cut(s)	608
BstFNI	CGCG	1 cut(s)	17
BstKTI	GATC	7 cut(s)	81, 242, 430, 463, 659, 681, 769
BstMAI	GTCTC	4 cut(s)	57, 216, 252, 917
BstMBI	GATC	7 cut(s)	78, 239, 427, 460, 656, 678, 766
BstMCI	CGRYCG	2 cut(s)	278, 776
BstMWI	GCNNNNNNNGC	7 cut(s)	130, 193, 283, 326, 512, 521, 752
BstPAI	GACNNNNGTC	1 cut(s)	929
BstPI	GGTNACC	1 cut(s)	608
BstSCI	CCNGG	1 cut(s)	235
BstSFI	CTRYAG	1 cut(s)	747
BstSLI	GKGCMC	1 cut(s)	894
BstUI	CGCG	1 cut(s)	17
BstV1I	GCAGC	5 cut(s)	145, 307, 499, 536, 733
BstX2I	RGATCY	1 cut(s)	239
BstYI	RGATCY	1 cut(s)	239
BstZI	CGGCCG	1 cut(s)	275
BsuRI	GGCC	1 cut(s)	277
BtgI	CCRYGG	1 cut(s)	835
Cac8I	GCNNGC	1 cut(s)	279
CaiI	CAGNNNCTG	1 cut(s)	626
Cfr10I	RCCGGY	3 cut(s)	31, 277, 775
Cfr13I	GGNCC	1 cut(s)	795
CseI	GACGC	2 cut(s)	265, 340
Csp6I	GTAC	3 cut(s)	382, 433, 840
CspCI	CAANNNNNGTGG	2 cut(s)	824, 859
CviAII	CATG	6 cut(s)	76, 497, 605, 660, 953, 967
CviQI	GTAC	3 cut(s)	382, 433, 840
DdeI	CTNAG	5 cut(s)	215, 324, 436, 528, 935
DpnI	GATC	7 cut(s)	80, 241, 429, 462, 658, 680, 768
DpnII	GATC	7 cut(s)	78, 239, 427, 460, 656, 678, 766
EaeI	YGGCCR	1 cut(s)	275
EagI	CGGCCG	1 cut(s)	275
Eam1104I	CTCTTC	2 cut(s)	62, 260
EarI	CTCTTC	2 cut(s)	62, 260
EciI	GGCGGA	1 cut(s)	153
EclXI	CGGCCG	1 cut(s)	275
Eco47I	GGWCC	1 cut(s)	795
Eco52I	CGGCCG	1 cut(s)	275
Eco57I	CTGAAG	1 cut(s)	957
Eco88I	CYCGRG	1 cut(s)	927
Eco91I	GGTNACC	1 cut(s)	608
EcoO65I	GGTNACC	1 cut(s)	608
EcoRI	GAATTC	1 cut(s)	154
Esp3I	CGTCTC	2 cut(s)	57, 252
FaeI	CATG	6 cut(s)	79, 500, 608, 663, 956, 970
FaqI	GGGAC	1 cut(s)	584
FatI	CATG	6 cut(s)	75, 496, 604, 659, 952, 966
FbaI	TGATCA	2 cut(s)	678, 766
Fnu4HI	GCNGC	8 cut(s)	134, 275, 321, 342, 345, 513, 525, 747
Fsp4HI	GCNGC	8 cut(s)	134, 275, 321, 342, 345, 513, 525, 747
FspBI	CTAG	1 cut(s)	863
GluI	GCNGC	8 cut(s)	134, 275, 321, 342, 345, 513, 525, 747
HaeIII	GGCC	1 cut(s)	277
HapII	CCGG	5 cut(s)	32, 237, 251, 278, 776
HgaI	GACGC	2 cut(s)	265, 340
Hin1I	GRCGYC	1 cut(s)	332
Hin1II	CATG	6 cut(s)	79, 500, 608, 663, 956, 970
HindIII	AAGCTT	1 cut(s)	284
HinfI	GANTC	8 cut(s)	88, 202, 593, 623, 850, 925, 930, 939
HpaII	CCGG	5 cut(s)	32, 237, 251, 278, 776
HphI	GGTGA	4 cut(s)	33, 265, 470, 725
Hpy188I	TCNGA	9 cut(s)	201, 207, 216, 297, 531, 628, 683, 766, 976
Hpy188III	TCNNGA	2 cut(s)	92, 873
Hpy99I	CGWCG	7 cut(s)	17, 133, 178, 187, 334, 578, 581
HpyAV	CCTTC	2 cut(s)	177, 371
HpyCH4III	ACNGT	2 cut(s)	129, 839
HpyCH4V	TGCA	5 cut(s)	63, 291, 506, 524, 749
HpyF10VI	GCNNNNNNNGC	7 cut(s)	130, 193, 283, 326, 512, 521, 752
HpyF3I	CTNAG	5 cut(s)	215, 324, 436, 528, 935
Hsp92I	GRCGYC	1 cut(s)	332
Hsp92II	CATG	6 cut(s)	79, 500, 608, 663, 956, 970
KroI	GCCGGC	1 cut(s)	277
KroNI	GCCGGC	1 cut(s)	279
Ksp22I	TGATCA	2 cut(s)	678, 766
Kzo9I	GATC	7 cut(s)	78, 239, 427, 460, 656, 678, 766
LmnI	GCTCC	2 cut(s)	14, 166
Lsp1109I	GCAGC	5 cut(s)	145, 307, 499, 536, 733
MaeI	CTAG	1 cut(s)	863
MaeIII	GTNAC	4 cut(s)	253, 608, 667, 907
MalI	GATC	7 cut(s)	80, 241, 429, 462, 658, 680, 768
MboI	GATC	7 cut(s)	78, 239, 427, 460, 656, 678, 766
MboII	GAAGA	8 cut(s)	49, 132, 138, 234, 277, 380, 443, 797
MfeI	CAATTG	1 cut(s)	260
MflI	RGATCY	1 cut(s)	239
MhlI	GDGCHC	2 cut(s)	11, 894
MluCI	AATT	6 cut(s)	154, 260, 518, 584, 801, 879
MlyI	GAGTC	4 cut(s)	82, 919, 933, 939
MroNI	GCCGGC	1 cut(s)	277
MseI	TTAA	3 cut(s)	447, 636, 897
MslI	CAYNNNNRTG	1 cut(s)	501
MspA1I	CMGCKG	1 cut(s)	651
MspI	CCGG	5 cut(s)	32, 237, 251, 278, 776
MspR9I	CCNGG	1 cut(s)	237
MunI	CAATTG	1 cut(s)	260
Mva1269I	GAATGC	1 cut(s)	291
MvnI	CGCG	1 cut(s)	17
MwoI	GCNNNNNNNGC	7 cut(s)	130, 193, 283, 326, 512, 521, 752
NaeI	GCCGGC	1 cut(s)	279
NciI	CCSGG	1 cut(s)	237
NdeII	GATC	7 cut(s)	78, 239, 427, 460, 656, 678, 766
NgoMIV	GCCGGC	1 cut(s)	277
NlaIII	CATG	6 cut(s)	79, 500, 608, 663, 956, 970
NlaIV	GGNNCC	4 cut(s)	162, 234, 691, 893
NmeAIII	GCCGAG	1 cut(s)	973
NmuCI	GTSAC	2 cut(s)	253, 667
PaeR7I	CTCGAG	1 cut(s)	927
PctI	GAATGC	1 cut(s)	291
PdiI	GCCGGC	1 cut(s)	279
PfeI	GAWTC	4 cut(s)	202, 593, 623, 850
PflFI	GACNNNGTC	1 cut(s)	334
PfoI	TCCNGGA	1 cut(s)	235
PkrI	GCNGC	8 cut(s)	135, 276, 322, 343, 346, 514, 526, 748
PleI	GAGTC	4 cut(s)	82, 919, 933, 938
PpsI	GAGTC	4 cut(s)	82, 919, 933, 938
PshAI	GACNNNNGTC	1 cut(s)	929
PspEI	GGTNACC	1 cut(s)	608
PspN4I	GGNNCC	4 cut(s)	162, 234, 691, 893
PspPI	GGNCC	1 cut(s)	795
PspXI	VCTCGAGB	1 cut(s)	927
PstI	CTGCAG	1 cut(s)	751
PstNI	CAGNNNCTG	1 cut(s)	626
PsuI	RGATCY	1 cut(s)	239
PsyI	GACNNNGTC	1 cut(s)	334
RsaI	GTAC	3 cut(s)	383, 434, 841
RsaNI	GTAC	3 cut(s)	382, 433, 840
RseI	CAYNNNNRTG	1 cut(s)	501
SaqAI	TTAA	3 cut(s)	447, 636, 897
SatI	GCNGC	8 cut(s)	134, 275, 321, 342, 345, 513, 525, 747
Sau3AI	GATC	7 cut(s)	78, 239, 427, 460, 656, 678, 766
Sau96I	GGNCC	1 cut(s)	795
SchI	GAGTC	4 cut(s)	82, 919, 933, 939
ScrFI	CCNGG	1 cut(s)	237
SduI	GDGCHC	2 cut(s)	11, 894
SfcI	CTRYAG	1 cut(s)	747
Sfr274I	CTCGAG	1 cut(s)	927
SinI	GGWCC	1 cut(s)	795
SlaI	CTCGAG	1 cut(s)	927
SmiMI	CAYNNNNRTG	1 cut(s)	501
SmlI	CTYRAG	1 cut(s)	927
SmoI	CTYRAG	1 cut(s)	927
Sse9I	AATT	6 cut(s)	154, 260, 518, 584, 801, 879
SsiI	CCGC	8 cut(s)	17, 47, 164, 230, 274, 341, 344, 651
SspMI	CTAG	1 cut(s)	863
StyD4I	CCNGG	1 cut(s)	235
TaaI	ACNGT	2 cut(s)	129, 839
TaqI	TCGA	6 cut(s)	23, 86, 305, 772, 872, 928
TasI	AATT	6 cut(s)	154, 260, 518, 584, 801, 879
TauI	GCSGC	3 cut(s)	277, 344, 347
TfiI	GAWTC	4 cut(s)	202, 593, 623, 850
Tru1I	TTAA	3 cut(s)	447, 636, 897
Tru9I	TTAA	3 cut(s)	447, 636, 897
TseFI	GTSAC	2 cut(s)	253, 667
TseI	GCWGC	5 cut(s)	133, 320, 512, 524, 746
Tsp45I	GTSAC	2 cut(s)	253, 667
TspDTI	ATGAA	3 cut(s)	132, 570, 804
TspGWI	ACGGA	3 cut(s)	379, 586, 702
Tth111I	GACNNNGTC	1 cut(s)	334
VpaK11BI	GGWCC	1 cut(s)	795
XapI	RAATTY	3 cut(s)	154, 518, 584
XhoI	CTCGAG	1 cut(s)	927
XspI	CTAG	1 cut(s)	863

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.