MD03G1065600.v1.1

phosphatase 2c

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr03
Physical Location & Seq
Reverse (-)
5241671 .. 5243796
2126 bp
Loading structure...
UTR
Exon/CDS
Intron
MD03G1065600.v1.1.491

Sequence Viewer

Length: 1122 bp
ATGTCGTGCTCCGTCGCAGTGGCTAACTCGCCGGTGTTTTCCCCGCCGTCGTCTCTGTTCTGCAACAAATCCTCCATGATCGCTCCGGCCCCAGAAACCCTGACTTCGGCGTCATCACCGGCGGGATTGGCTTCGTGTTCGTCTCCATCTTCGCCGTCTTCGCCGTTTCGGATTCGGATCCCTAAGCCGCCGAGCGGGTTGTCGTGCTCGGGTCCGGGGTCTCCAGTGTCGCAGCTGAAGAGGAAGAGGCCGGCGAAGCTTTGTATTCCAGTGGTGTCCTCGGGATACGGGACTGCTCCGCCGACGCCGTTAACGGCGGGGAGGCGAGAGGTGGTGGAGTCAGATAGAGAAGGACACTACTACGTGTGTTGCAAGAGAGGGAGGAGAGAGGCTTTGGAGGATCGCTACTCAGCTAGTCTTAATCTTGAAGGTGATTCCAAACAGGCGATTTTCGGTATATTTGATGGGCATGGAGGTGCAAAAGCTGCTGAGTTTGCGGCAGAGAACTTGTCAAAGAACATTTTAGATGAAGTTGCGAGGAGGGGTGGTGATGAAATTGAGGAAGCAGTCAAGCATGGTTATCTGAATACCGACTCTGATTTTCTCAAGGAGGATTTCCGTGGTGGATCATGCTGCGTGACGGCTTTGATCAGGAACGGTAACCTTGTTGTGTCCAATGCTGGCGATTGCCGTGCTGTCTTGAGCAGTGGAGGCGCTGCCGAAGCACTCACATCTGATCATCGGCCATCAAGGGAAGACGAGAAAGCCAGAATTGATAACTTGGGTGGATATGTCGATTTATACCATGGTGTTTGGAGAATTCAGGGATCTCTTGCTGTATCGAGAGGAATTGGCGATAGGCACCTTAAACAATATGTAACTCCAGAGCCAGAGACCAAAGTGCTCAGAATCAAACCCGAACACGAGTTCTTAATTATGGCCTCAGACGGATTATGGGATAAGGTTAGCAACCAAGAAGCAGTGGATATCGTACGTCCTTCATGCTTAGGCACTGACGGGCAGCCGTTGGTGGCTTGCAAAAAGCTGATAGAACTATCTACATCACGAGGCTCTTTCGACGATATTAGCGTGATGGTAGTCCAATTGAGACGCTACTTATGA

Protein Analysis

374

Amino Acids

39.96

Weight (kDa)

7.51

Isoelectric Point (pI)

61.13

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PP2C PF00481 120 - 361 2.1e-61 Protein phosphatase 2C
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Orthologous Genes (Group: OG0011762)

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 109
AccB1I GGYRCC 1 cut(s) 861
AccBSI CCGCTC 1 cut(s) 195
AciI CCGC 7 cut(s) 44, 122, 188, 195, 299, 317, 497
AclWI GGATC 5 cut(s) 172, 185, 408, 634, 835
AcoI YGGCCR 1 cut(s) 743
AcsI RAATTY 1 cut(s) 819
AcuI CTGAAG 1 cut(s) 257
AcyI GRCGYC 2 cut(s) 110, 305
AfaI GTAC 1 cut(s) 993
AfiI CCNNNNNNNGG 2 cut(s) 106, 194
AflIII ACRYGT 1 cut(s) 363
AgsI TTSAA 1 cut(s) 428
AluBI AGCT 5 cut(s) 235, 259, 413, 485, 1045
AluI AGCT 5 cut(s) 235, 259, 413, 485, 1045
Alw21I GWGCWC 3 cut(s) 11, 209, 906
Alw26I GTCTC 5 cut(s) 57, 147, 225, 887, 1102
AlwI GGATC 5 cut(s) 172, 185, 408, 634, 835
Ama87I CYCGRG 2 cut(s) 208, 280
AoxI GGCC 4 cut(s) 87, 248, 743, 939
ApeKI GCWGC 5 cut(s) 232, 485, 633, 716, 1021
ApoI RAATTY 1 cut(s) 819
AspLEI GCGC 1 cut(s) 716
AspS9I GGNCC 2 cut(s) 88, 212
AsuC2I CCSGG 1 cut(s) 216
AsuHPI GGTGA 3 cut(s) 108, 443, 560
AvaI CYCGRG 2 cut(s) 208, 280
AvaII GGWCC 1 cut(s) 212
BamHI GGATCC 1 cut(s) 177
BanI GGYRCC 1 cut(s) 861
BauI CACGAG 2 cut(s) 923, 1065
BbsI GAAGAC 2 cut(s) 150, 762
Bbv12I GWGCWC 3 cut(s) 11, 209, 906
BbvI GCAGC 5 cut(s) 244, 472, 620, 703, 1033
BccI CCATC 4 cut(s) 154, 458, 754, 1087
BceAI ACGGC 8 cut(s) 31, 139, 148, 292, 330, 657, 675, 1009
BcgI CGANNNNNNTGC 2 cut(s) 674, 708
BciVI GTATCC 1 cut(s) 278
BclI TGATCA 2 cut(s) 648, 736
BcnI CCSGG 1 cut(s) 216
BcoDI GTCTC 5 cut(s) 57, 147, 225, 887, 1102
BfaI CTAG 1 cut(s) 414
BfoI RGCGCY 1 cut(s) 717
BfuI GTATCC 1 cut(s) 278
BisI GCNGC 7 cut(s) 188, 233, 486, 498, 634, 717, 1022
BlsI GCNGC 7 cut(s) 189, 234, 487, 499, 635, 718, 1023
Bme1390I CCNGG 1 cut(s) 216
Bme18I GGWCC 1 cut(s) 212
BmeT110I CYCGRG 2 cut(s) 208, 280
BmgT120I GGNCC 2 cut(s) 88, 212
BmiI GGNNCC 4 cut(s) 90, 179, 213, 863
BmrFI CCNGG 1 cut(s) 216
BpiI GAAGAC 2 cut(s) 150, 762
BpmI CTGGAG 2 cut(s) 207, 867
Bpu10I CCTNAGC 2 cut(s) 183, 1006
BpuEI CTTGAG 2 cut(s) 590, 721
BpuMI CCSGG 1 cut(s) 216
BsaAI YACGTR 1 cut(s) 364
BsaBI GATNNNNATC 1 cut(s) 176
BsaHI GRCGYC 2 cut(s) 110, 305
BsaI GGTCTC 2 cut(s) 225, 887
BsaJI CCNNGG 4 cut(s) 215, 279, 619, 805
BsaXI ACNNNNNCTCC 4 cut(s) 56, 86, 532, 562
Bsc4I CCNNNNNNNGG 2 cut(s) 106, 194
Bse118I RCCGGY 3 cut(s) 31, 118, 250
Bse1I ACTGG 2 cut(s) 224, 269
Bse8I GATNNNNATC 1 cut(s) 176
BseDI CCNNGG 4 cut(s) 215, 279, 619, 805
BseJI GATNNNNATC 1 cut(s) 176
BseLI CCNNNNNNNGG 2 cut(s) 106, 194
BseMII CTCAG 4 cut(s) 423, 480, 919, 957
BseNI ACTGG 2 cut(s) 224, 269
BseRI GAGGAG 2 cut(s) 397, 553
BseXI GCAGC 5 cut(s) 244, 472, 620, 703, 1033
BshFI GGCC 4 cut(s) 89, 250, 745, 941
BshNI GGYRCC 1 cut(s) 861
BsiHKAI GWGCWC 3 cut(s) 11, 209, 906
BsiHKCI CYCGRG 2 cut(s) 208, 280
BsiSI CCGG 5 cut(s) 32, 86, 119, 215, 251
BsiWI CGTACG 1 cut(s) 991
BslFI GGGAC 1 cut(s) 304
BslI CCNNNNNNNGG 2 cut(s) 106, 194
BsmAI GTCTC 5 cut(s) 57, 147, 225, 887, 1102
BsmBI CGTCTC 3 cut(s) 57, 147, 1102
BsmFI GGGAC 1 cut(s) 304
BsnI GGCC 4 cut(s) 89, 250, 745, 941
Bso31I GGTCTC 2 cut(s) 225, 887
BsoBI CYCGRG 2 cut(s) 208, 280
Bsp1286I GDGCHC 3 cut(s) 11, 209, 906
Bsp143I GATC 7 cut(s) 78, 177, 400, 626, 648, 736, 827
Bsp19I CCATGG 1 cut(s) 805
BspACI CCGC 7 cut(s) 44, 122, 188, 195, 299, 317, 497
BspANI GGCC 4 cut(s) 89, 250, 745, 941
BspCNI CTCAG 4 cut(s) 422, 481, 918, 956
BspLI GGNNCC 4 cut(s) 90, 179, 213, 863
BspPI GGATC 5 cut(s) 172, 185, 408, 634, 835
BspT107I GGYRCC 1 cut(s) 861
BspTNI GGTCTC 2 cut(s) 225, 887
BsrBI CCGCTC 1 cut(s) 195
BsrFI RCCGGY 3 cut(s) 31, 118, 250
BsrI ACTGG 2 cut(s) 224, 269
BssAI RCCGGY 3 cut(s) 31, 118, 250
BssECI CCNNGG 4 cut(s) 215, 279, 619, 805
BssMI GATC 7 cut(s) 78, 177, 400, 626, 648, 736, 827
BssNI GRCGYC 2 cut(s) 110, 305
BssSI CACGAG 2 cut(s) 923, 1065
BssT1I CCWWGG 1 cut(s) 805
Bst2BI CACGAG 2 cut(s) 923, 1065
Bst4CI ACNGT 1 cut(s) 659
Bst6I CTCTTC 2 cut(s) 233, 239
BstACI GRCGYC 2 cut(s) 110, 305
BstAPI GCANNNNNTGC 1 cut(s) 485
BstBAI YACGTR 1 cut(s) 364
BstC8I GCNNGC 3 cut(s) 252, 682, 1036
BstDEI CTNAG 6 cut(s) 183, 409, 489, 905, 943, 1006
BstDSI CCRYGG 2 cut(s) 619, 805
BstEII GGTNACC 1 cut(s) 659
BstH2I RGCGCY 1 cut(s) 717
BstHHI GCGC 1 cut(s) 716
BstKTI GATC 7 cut(s) 81, 180, 403, 629, 651, 739, 830
BstMAI GTCTC 5 cut(s) 57, 147, 225, 887, 1102
BstMBI GATC 7 cut(s) 78, 177, 400, 626, 648, 736, 827
BstMWI GCNNNNNNNGC 7 cut(s) 128, 160, 256, 485, 494, 711, 722
BstPI GGTNACC 1 cut(s) 659
BstSCI CCNGG 1 cut(s) 214
BstV1I GCAGC 5 cut(s) 244, 472, 620, 703, 1033
BstV2I GAAGAC 2 cut(s) 150, 762
BstX2I RGATCY 2 cut(s) 177, 827
BstYI RGATCY 2 cut(s) 177, 827
BsuI GTATCC 1 cut(s) 278
BsuRI GGCC 4 cut(s) 89, 250, 745, 941
BtgI CCRYGG 2 cut(s) 619, 805
BtsI GCAGTG 3 cut(s) 24, 712, 987
BtsIMutI CAGTG 6 cut(s) 24, 231, 276, 712, 987, 1011
Cac8I GCNNGC 3 cut(s) 252, 682, 1036
CfoI GCGC 1 cut(s) 716
Cfr10I RCCGGY 3 cut(s) 31, 118, 250
Cfr13I GGNCC 2 cut(s) 88, 212
CseI GACGC 2 cut(s) 99, 313
Csp6I GTAC 1 cut(s) 992
CviAII CATG 6 cut(s) 76, 470, 575, 630, 806, 1002
CviQI GTAC 1 cut(s) 992
DdeI CTNAG 6 cut(s) 183, 409, 489, 905, 943, 1006
DpnI GATC 7 cut(s) 80, 179, 402, 628, 650, 738, 829
DpnII GATC 7 cut(s) 78, 177, 400, 626, 648, 736, 827
DrdI GACNNNNNNGTC 1 cut(s) 109
DseDI GACNNNNNNGTC 1 cut(s) 109
EaeI YGGCCR 1 cut(s) 743
Eam1104I CTCTTC 2 cut(s) 233, 239
EarI CTCTTC 2 cut(s) 233, 239
EciI GGCGGA 1 cut(s) 288
Eco130I CCWWGG 1 cut(s) 805
Eco31I GGTCTC 2 cut(s) 225, 887
Eco32I GATATC 1 cut(s) 988
Eco47I GGWCC 1 cut(s) 212
Eco57I CTGAAG 1 cut(s) 257
Eco88I CYCGRG 2 cut(s) 208, 280
Eco91I GGTNACC 1 cut(s) 659
EcoO65I GGTNACC 1 cut(s) 659
EcoRI GAATTC 1 cut(s) 819
EcoRV GATATC 1 cut(s) 988
EcoT14I CCWWGG 1 cut(s) 805
ErhI CCWWGG 1 cut(s) 805
Esp3I CGTCTC 3 cut(s) 57, 147, 1102
FaeI CATG 6 cut(s) 79, 473, 578, 633, 809, 1005
FaqI GGGAC 1 cut(s) 304
FatI CATG 6 cut(s) 75, 469, 574, 629, 805, 1001
FauI CCCGC 4 cut(s) 51, 115, 188, 310
FbaI TGATCA 2 cut(s) 648, 736
Fnu4HI GCNGC 7 cut(s) 188, 233, 486, 498, 634, 717, 1022
Fsp4HI GCNGC 7 cut(s) 188, 233, 486, 498, 634, 717, 1022
FspBI CTAG 1 cut(s) 414
GlaI GCGC 1 cut(s) 715
GluI GCNGC 7 cut(s) 188, 233, 486, 498, 634, 717, 1022
GsuI CTGGAG 2 cut(s) 207, 867
HaeII RGCGCY 1 cut(s) 717
HaeIII GGCC 4 cut(s) 89, 250, 745, 941
HapII CCGG 5 cut(s) 32, 86, 119, 215, 251
HgaI GACGC 2 cut(s) 99, 313
HhaI GCGC 1 cut(s) 716
Hin1I GRCGYC 2 cut(s) 110, 305
Hin1II CATG 6 cut(s) 79, 473, 578, 633, 809, 1005
Hin6I GCGC 1 cut(s) 714
HinP1I GCGC 1 cut(s) 714
HincII GTYRAC 1 cut(s) 312
HindII GTYRAC 1 cut(s) 312
HindIII AAGCTT 1 cut(s) 257
HinfI GANTC 5 cut(s) 172, 338, 434, 593, 909
HpaI GTTAAC 1 cut(s) 312
HpaII CCGG 5 cut(s) 32, 86, 119, 215, 251
HphI GGTGA 3 cut(s) 108, 443, 560
Hpy166II GTNNAC 1 cut(s) 312
Hpy188I TCNGA 8 cut(s) 171, 177, 343, 585, 598, 736, 908, 946
Hpy188III TCNNGA 7 cut(s) 282, 425, 652, 700, 843, 884, 1065
Hpy8I GTNNAC 1 cut(s) 312
Hpy99I CGWCG 4 cut(s) 17, 52, 307, 1082
HpyAV CCTTC 3 cut(s) 344, 422, 1008
HpyCH4III ACNGT 1 cut(s) 659
HpyCH4IV ACGT 2 cut(s) 363, 994
HpyCH4V TGCA 4 cut(s) 63, 372, 479, 1038
HpyF10VI GCNNNNNNNGC 7 cut(s) 128, 160, 256, 485, 494, 711, 722
HpyF3I CTNAG 6 cut(s) 183, 409, 489, 905, 943, 1006
HpySE526I ACGT 2 cut(s) 363, 994
Hsp92I GRCGYC 2 cut(s) 110, 305
Hsp92II CATG 6 cut(s) 79, 473, 578, 633, 809, 1005
HspAI GCGC 1 cut(s) 714
KroI GCCGGC 1 cut(s) 250
KroNI GCCGGC 1 cut(s) 252
Ksp22I TGATCA 2 cut(s) 648, 736
KspAI GTTAAC 1 cut(s) 312
Kzo9I GATC 7 cut(s) 78, 177, 400, 626, 648, 736, 827
LmnI GCTCC 3 cut(s) 14, 88, 301
Lsp1109I GCAGC 5 cut(s) 244, 472, 620, 703, 1033
MaeI CTAG 1 cut(s) 414
MaeII ACGT 2 cut(s) 363, 994
MaeIII GTNAC 3 cut(s) 637, 659, 877
MalI GATC 7 cut(s) 80, 179, 402, 628, 650, 738, 829
MbiI CCGCTC 1 cut(s) 195
MboI GATC 7 cut(s) 78, 177, 400, 626, 648, 736, 827
MboII GAAGA 5 cut(s) 141, 150, 250, 256, 767
MfeI CAATTG 1 cut(s) 1103
MflI RGATCY 2 cut(s) 177, 827
MhlI GDGCHC 3 cut(s) 11, 209, 906
MluCI AATT 6 cut(s) 555, 771, 819, 849, 933, 1103
MlyI GAGTC 2 cut(s) 347, 587
MroNI GCCGGC 1 cut(s) 250
MseI TTAA 4 cut(s) 311, 420, 867, 932
MslI CAYNNNNRTG 1 cut(s) 474
MspA1I CMGCKG 1 cut(s) 235
MspI CCGG 5 cut(s) 32, 86, 119, 215, 251
MspR9I CCNGG 1 cut(s) 216
MunI CAATTG 1 cut(s) 1103
MwoI GCNNNNNNNGC 7 cut(s) 128, 160, 256, 485, 494, 711, 722
NaeI GCCGGC 1 cut(s) 252
NciI CCSGG 1 cut(s) 216
NcoI CCATGG 1 cut(s) 805
NdeII GATC 7 cut(s) 78, 177, 400, 626, 648, 736, 827
NgoMIV GCCGGC 1 cut(s) 250
NlaIII CATG 6 cut(s) 79, 473, 578, 633, 809, 1005
NlaIV GGNNCC 4 cut(s) 90, 179, 213, 863
NmeAIII GCCGAG 1 cut(s) 216
NmuCI GTSAC 1 cut(s) 637
PcsI WCGNNNNNNNCGW 1 cut(s) 1086
PdiI GCCGGC 1 cut(s) 252
PfeI GAWTC 3 cut(s) 172, 434, 909
Pfl23II CGTACG 1 cut(s) 991
PkrI GCNGC 7 cut(s) 189, 234, 487, 499, 635, 718, 1023
PleI GAGTC 2 cut(s) 346, 587
PpsI GAGTC 2 cut(s) 346, 587
Ppu21I YACGTR 1 cut(s) 364
PspEI GGTNACC 1 cut(s) 659
PspLI CGTACG 1 cut(s) 991
PspN4I GGNNCC 4 cut(s) 90, 179, 213, 863
PspPI GGNCC 2 cut(s) 88, 212
PsuI RGATCY 2 cut(s) 177, 827
PvuII CAGCTG 1 cut(s) 235
RsaI GTAC 1 cut(s) 993
RsaNI GTAC 1 cut(s) 992
RseI CAYNNNNRTG 1 cut(s) 474
SaqAI TTAA 4 cut(s) 311, 420, 867, 932
SatI GCNGC 7 cut(s) 188, 233, 486, 498, 634, 717, 1022
Sau3AI GATC 7 cut(s) 78, 177, 400, 626, 648, 736, 827
Sau96I GGNCC 2 cut(s) 88, 212
SchI GAGTC 2 cut(s) 347, 587
ScrFI CCNGG 1 cut(s) 216
SduI GDGCHC 3 cut(s) 11, 209, 906
SgrAI CRCCGGYG 2 cut(s) 31, 118
SinI GGWCC 1 cut(s) 212
SmiMI CAYNNNNRTG 1 cut(s) 474
SmlI CTYRAG 2 cut(s) 605, 700
SmoI CTYRAG 2 cut(s) 605, 700
Sse9I AATT 6 cut(s) 555, 771, 819, 849, 933, 1103
SsiI CCGC 7 cut(s) 44, 122, 188, 195, 299, 317, 497
SspMI CTAG 1 cut(s) 414
StyD4I CCNGG 1 cut(s) 214
StyI CCWWGG 1 cut(s) 805
TaaI ACNGT 1 cut(s) 659
TaiI ACGT 2 cut(s) 366, 997
TaqI TCGA 3 cut(s) 795, 842, 1077
TasI AATT 6 cut(s) 555, 771, 819, 849, 933, 1103
TauI GCSGC 2 cut(s) 190, 500
TfiI GAWTC 3 cut(s) 172, 434, 909
Tru1I TTAA 4 cut(s) 311, 420, 867, 932
Tru9I TTAA 4 cut(s) 311, 420, 867, 932
TscAI CASTG 6 cut(s) 24, 231, 276, 712, 987, 1018
TseFI GTSAC 1 cut(s) 637
TseI GCWGC 5 cut(s) 232, 485, 633, 716, 1021
Tsp45I GTSAC 1 cut(s) 637
TspDTI ATGAA 3 cut(s) 543, 567, 990
TspGWI ACGGA 2 cut(s) 608, 963
TspRI CASTG 6 cut(s) 24, 231, 276, 712, 987, 1018
VpaK11BI GGWCC 1 cut(s) 212
XapI RAATTY 1 cut(s) 819
XspI CTAG 1 cut(s) 414
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.