MD11G1070500.v1.1

phosphatase 2c

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr11
Physical Location & Seq
Reverse (-)
6027348 .. 6029526
2179 bp
Loading structure...
UTR
Exon/CDS
Intron
MD11G1070500.v1.1.491

Sequence Viewer

Length: 1128 bp
ATGTCGTGCTCCGTCGCAGTTGCTAACTCGCCGATGTTTTCTCCGCCGTCGTCTCTGTTCTGCAACAAATCCTCCATGATCTCTCCGGCCCCAGAAACCCTAACTTTACCTCCGCCGCCGTCGGCCTTATCGCCGTCAGGATTGGCTTCGTGTTCGTCTCCGTCGTCGCCGTTTCGGATTCGGATCCCGAATCCGCCGAGCGGGTTGTCGTGTTCGGGTCCGGGGTCTCCAGTGACGCAGCTGAAGAGGAAGAGGCCGGCGAAGCTTTGTATTCCGGTGGTATCCTCGGGATTTGGGACTGCTCCGCCGACGCCGACGACGGCCGGTTGGAGAGATGTGATGGAGGAAGATAGAGAAGGGTACTACCACGTGTGTTGCAAGAGAGGGAGGAGAGAGGCTTTGGAGGATCGCTACTCAGCTAGTCTTAATCTTGAAGGTGATTCCAAACAGGCGATTTTTGGTATATTTGATGGGCATGGAGGTGTAAAAGCTGCCGAGTTTGCAGCAGAGAACTTGTCAAAGAACATTTTAGATGAAGTTGCGAGGAGGGGTGATGATGAAATTGAGGAGGCAATTAAGCATGGTTATCTGAATACGGACTCTGAGTTTCTTAAAGAGGATTTTCGTGGTGGATCATGCTCTTTGACGGCTTTGATCAGGAACGGTAACTTGGTTGTGTCCAATGCTGGCGATTGTCGTGCTGTCTTGAGCAGTGGAGGTGCTGCTGAGGCCCTCACATCTGATCATCGGCCATCAAGGGAAGACGAGAAAGCCAGAATTGAGAACTTGGGTGGATATGTCGATTTATGCCGTGGTGTTTGGAGAATTCAGGGGTCTCTAGCTGTATCCAGAGGAATCGGAGATAGGCACCTTAAACAATATGTAATTCCAGACCCAGAGACCAAAGTACTCAGAATCAAACCCGAACACGAGTTCATAATCATGGCCTCAGATGGATTATGGGATAAGGTTAGCAACCAAGAAGCAGTGGATGTTGTTCGTCCTTCATGCTTAGGCGCTGACGGGCAACCTTTGGTGGCTTGCAAAAAGCTAATAGAACTATCCAAATCACGCGGCTCTTGGGACGACATTAGCGTGATGGTAGTCCAATTGAGACCTTACTTATGA

Protein Analysis

376

Amino Acids

40.39

Weight (kDa)

6.35

Isoelectric Point (pI)

58.43

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PP2C PF00481 123 - 363 1.1e-61 Protein phosphatase 2C
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Orthologous Genes (Group: OG0011762)

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 867
AccBSI CCGCTC 1 cut(s) 201
AccII CGCG 1 cut(s) 1074
AciI CCGC 7 cut(s) 44, 113, 116, 194, 201, 305, 1074
AclWI GGATC 4 cut(s) 178, 191, 414, 640
AcoI YGGCCR 2 cut(s) 321, 749
AcsI RAATTY 1 cut(s) 825
AcuI CTGAAG 1 cut(s) 263
AcvI CACGTG 1 cut(s) 370
AcyI GRCGYC 1 cut(s) 311
AfaI GTAC 2 cut(s) 362, 909
AfiI CCNNNNNNNGG 1 cut(s) 200
AflIII ACRYGT 1 cut(s) 369
AgsI TTSAA 1 cut(s) 434
AjuI GAANNNNNNNTTGG 2 cut(s) 653, 685
AluBI AGCT 6 cut(s) 241, 265, 419, 491, 842, 1051
AluI AGCT 6 cut(s) 241, 265, 419, 491, 842, 1051
Alw21I GWGCWC 1 cut(s) 11
Alw26I GTCTC 6 cut(s) 57, 162, 231, 840, 893, 1108
AlwI GGATC 4 cut(s) 178, 191, 414, 640
Ama87I CYCGRG 1 cut(s) 286
AoxI GGCC 7 cut(s) 87, 123, 254, 321, 729, 749, 945
ApeKI GCWGC 4 cut(s) 238, 491, 503, 722
ApoI RAATTY 1 cut(s) 825
AspLEI GCGC 1 cut(s) 1019
AspS9I GGNCC 3 cut(s) 88, 218, 730
AsuC2I CCSGG 1 cut(s) 222
AsuHPI GGTGA 2 cut(s) 449, 563
AvaI CYCGRG 1 cut(s) 286
AvaII GGWCC 1 cut(s) 218
BamHI GGATCC 1 cut(s) 183
BanI GGYRCC 1 cut(s) 867
BauI CACGAG 1 cut(s) 929
BbrPI CACGTG 1 cut(s) 370
BbsI GAAGAC 1 cut(s) 768
Bbv12I GWGCWC 1 cut(s) 11
BbvCI CCTCAGC 1 cut(s) 726
BbvI GCAGC 4 cut(s) 250, 478, 515, 709
BccI CCATC 5 cut(s) 334, 464, 760, 947, 1093
BceAI ACGGC 7 cut(s) 31, 103, 118, 154, 336, 663, 795
BcgI CGANNNNNNTGC 2 cut(s) 680, 714
BciVI GTATCC 2 cut(s) 292, 856
BclI TGATCA 2 cut(s) 654, 742
BcnI CCSGG 1 cut(s) 222
BcoDI GTCTC 6 cut(s) 57, 162, 231, 840, 893, 1108
BfaI CTAG 2 cut(s) 420, 839
BfoI RGCGCY 1 cut(s) 1020
BfuI GTATCC 2 cut(s) 292, 856
BisI GCNGC 6 cut(s) 116, 239, 492, 504, 723, 1075
BlsI GCNGC 6 cut(s) 117, 240, 493, 505, 724, 1076
BmcAI AGTACT 1 cut(s) 909
Bme1390I CCNGG 1 cut(s) 222
Bme18I GGWCC 1 cut(s) 218
BmeT110I CYCGRG 1 cut(s) 286
BmgT120I GGNCC 3 cut(s) 88, 218, 730
BmiI GGNNCC 4 cut(s) 90, 185, 219, 869
BmrFI CCNGG 1 cut(s) 222
BpiI GAAGAC 1 cut(s) 768
BpmI CTGGAG 1 cut(s) 213
Bpu10I CCTNAGC 2 cut(s) 726, 1012
BpuEI CTTGAG 1 cut(s) 727
BpuMI CCSGG 1 cut(s) 222
BsaAI YACGTR 1 cut(s) 370
BsaBI GATNNNNATC 1 cut(s) 182
BsaHI GRCGYC 1 cut(s) 311
BsaI GGTCTC 4 cut(s) 231, 840, 893, 1108
BsaJI CCNNGG 3 cut(s) 221, 285, 811
BsaWI WCCGGW 1 cut(s) 274
BsaXI ACNNNNNCTCC 4 cut(s) 56, 86, 94, 124
Bsc4I CCNNNNNNNGG 1 cut(s) 200
Bse118I RCCGGY 2 cut(s) 256, 323
Bse1I ACTGG 1 cut(s) 230
Bse8I GATNNNNATC 1 cut(s) 182
BseDI CCNNGG 3 cut(s) 221, 285, 811
BseGI GGATG 1 cut(s) 997
BseJI GATNNNNATC 1 cut(s) 182
BseLI CCNNNNNNNGG 1 cut(s) 200
BseMII CTCAG 5 cut(s) 429, 594, 717, 925, 963
BseNI ACTGG 1 cut(s) 230
BseRI GAGGAG 3 cut(s) 403, 559, 581
BseX3I CGGCCG 1 cut(s) 321
BseXI GCAGC 4 cut(s) 250, 478, 515, 709
Bsh1236I CGCG 1 cut(s) 1074
Bsh1285I CGRYCG 1 cut(s) 324
BshFI GGCC 7 cut(s) 89, 125, 256, 323, 731, 751, 947
BshNI GGYRCC 1 cut(s) 867
BsiEI CGRYCG 1 cut(s) 324
BsiHKAI GWGCWC 1 cut(s) 11
BsiHKCI CYCGRG 1 cut(s) 286
BsiSI CCGG 5 cut(s) 86, 221, 257, 275, 324
BslFI GGGAC 2 cut(s) 310, 1097
BslI CCNNNNNNNGG 1 cut(s) 200
BsmAI GTCTC 6 cut(s) 57, 162, 231, 840, 893, 1108
BsmBI CGTCTC 2 cut(s) 57, 162
BsmFI GGGAC 2 cut(s) 310, 1097
BsnI GGCC 7 cut(s) 89, 125, 256, 323, 731, 751, 947
Bso31I GGTCTC 4 cut(s) 231, 840, 893, 1108
BsoBI CYCGRG 1 cut(s) 286
Bsp1286I GDGCHC 1 cut(s) 11
Bsp143I GATC 6 cut(s) 78, 183, 406, 632, 654, 742
BspACI CCGC 7 cut(s) 44, 113, 116, 194, 201, 305, 1074
BspANI GGCC 7 cut(s) 89, 125, 256, 323, 731, 751, 947
BspCNI CTCAG 5 cut(s) 428, 595, 718, 924, 962
BspFNI CGCG 1 cut(s) 1074
BspLI GGNNCC 4 cut(s) 90, 185, 219, 869
BspPI GGATC 4 cut(s) 178, 191, 414, 640
BspT107I GGYRCC 1 cut(s) 867
BspTNI GGTCTC 4 cut(s) 231, 840, 893, 1108
BsrBI CCGCTC 1 cut(s) 201
BsrFI RCCGGY 2 cut(s) 256, 323
BsrI ACTGG 1 cut(s) 230
BssAI RCCGGY 2 cut(s) 256, 323
BssECI CCNNGG 3 cut(s) 221, 285, 811
BssMI GATC 6 cut(s) 78, 183, 406, 632, 654, 742
BssNI GRCGYC 1 cut(s) 311
BssSI CACGAG 1 cut(s) 929
Bst2BI CACGAG 1 cut(s) 929
Bst4CI ACNGT 1 cut(s) 665
Bst6I CTCTTC 2 cut(s) 239, 245
BstACI GRCGYC 1 cut(s) 311
BstBAI YACGTR 1 cut(s) 370
BstC8I GCNNGC 3 cut(s) 258, 688, 1042
BstDEI CTNAG 6 cut(s) 415, 603, 726, 911, 949, 1012
BstDSI CCRYGG 1 cut(s) 811
BstF5I GGATG 1 cut(s) 997
BstFNI CGCG 1 cut(s) 1074
BstH2I RGCGCY 1 cut(s) 1020
BstHHI GCGC 1 cut(s) 1019
BstKTI GATC 6 cut(s) 81, 186, 409, 635, 657, 745
BstMAI GTCTC 6 cut(s) 57, 162, 231, 840, 893, 1108
BstMBI GATC 6 cut(s) 78, 183, 406, 632, 654, 742
BstMCI CGRYCG 1 cut(s) 324
BstMWI GCNNNNNNNGC 3 cut(s) 262, 500, 728
BstSCI CCNGG 1 cut(s) 220
BstUI CGCG 1 cut(s) 1074
BstV1I GCAGC 4 cut(s) 250, 478, 515, 709
BstV2I GAAGAC 1 cut(s) 768
BstX2I RGATCY 1 cut(s) 183
BstYI RGATCY 1 cut(s) 183
BstZI CGGCCG 1 cut(s) 321
BsuI GTATCC 2 cut(s) 292, 856
BsuRI GGCC 7 cut(s) 89, 125, 256, 323, 731, 751, 947
BtgI CCRYGG 1 cut(s) 811
BtsCI GGATG 1 cut(s) 997
BtsI GCAGTG 2 cut(s) 718, 993
BtsIMutI CAGTG 3 cut(s) 237, 718, 993
Cac8I GCNNGC 3 cut(s) 258, 688, 1042
CfoI GCGC 1 cut(s) 1019
Cfr10I RCCGGY 2 cut(s) 256, 323
Cfr13I GGNCC 3 cut(s) 88, 218, 730
CseI GACGC 2 cut(s) 244, 319
Csp6I GTAC 2 cut(s) 361, 908
CspCI CAANNNNNGTGG 2 cut(s) 356, 391
CviAII CATG 6 cut(s) 76, 476, 581, 636, 943, 1008
CviQI GTAC 2 cut(s) 361, 908
DdeI CTNAG 6 cut(s) 415, 603, 726, 911, 949, 1012
DpnI GATC 6 cut(s) 80, 185, 408, 634, 656, 744
DpnII GATC 6 cut(s) 78, 183, 406, 632, 654, 742
EaeI YGGCCR 2 cut(s) 321, 749
EagI CGGCCG 1 cut(s) 321
Eam1104I CTCTTC 2 cut(s) 239, 245
EarI CTCTTC 2 cut(s) 239, 245
EciI GGCGGA 4 cut(s) 33, 102, 183, 294
EclXI CGGCCG 1 cut(s) 321
Eco31I GGTCTC 4 cut(s) 231, 840, 893, 1108
Eco47I GGWCC 1 cut(s) 218
Eco52I CGGCCG 1 cut(s) 321
Eco57I CTGAAG 1 cut(s) 263
Eco72I CACGTG 1 cut(s) 370
Eco88I CYCGRG 1 cut(s) 286
EcoO109I RGGNCCY 1 cut(s) 730
EcoRI GAATTC 1 cut(s) 825
Esp3I CGTCTC 2 cut(s) 57, 162
FaeI CATG 6 cut(s) 79, 479, 584, 639, 946, 1011
FaqI GGGAC 2 cut(s) 310, 1097
FatI CATG 6 cut(s) 75, 475, 580, 635, 942, 1007
FauI CCCGC 1 cut(s) 194
FbaI TGATCA 2 cut(s) 654, 742
Fnu4HI GCNGC 6 cut(s) 116, 239, 492, 504, 723, 1075
FokI GGATG 1 cut(s) 1004
Fsp4HI GCNGC 6 cut(s) 116, 239, 492, 504, 723, 1075
FspBI CTAG 2 cut(s) 420, 839
GlaI GCGC 1 cut(s) 1018
GluI GCNGC 6 cut(s) 116, 239, 492, 504, 723, 1075
GsuI CTGGAG 1 cut(s) 213
HaeII RGCGCY 1 cut(s) 1020
HaeIII GGCC 7 cut(s) 89, 125, 256, 323, 731, 751, 947
HapII CCGG 5 cut(s) 86, 221, 257, 275, 324
HgaI GACGC 2 cut(s) 244, 319
HhaI GCGC 1 cut(s) 1019
Hin1I GRCGYC 1 cut(s) 311
Hin1II CATG 6 cut(s) 79, 479, 584, 639, 946, 1011
Hin6I GCGC 1 cut(s) 1017
HinP1I GCGC 1 cut(s) 1017
HindIII AAGCTT 1 cut(s) 263
HinfI GANTC 6 cut(s) 178, 190, 440, 599, 855, 915
HpaII CCGG 5 cut(s) 86, 221, 257, 275, 324
HphI GGTGA 2 cut(s) 449, 563
Hpy188I TCNGA 8 cut(s) 177, 183, 591, 604, 742, 860, 914, 952
Hpy188III TCNNGA 8 cut(s) 138, 187, 288, 431, 658, 706, 849, 890
Hpy99I CGWCG 8 cut(s) 17, 52, 124, 166, 169, 313, 319, 322
HpyAV CCTTC 3 cut(s) 350, 428, 1014
HpyCH4III ACNGT 1 cut(s) 665
HpyCH4IV ACGT 1 cut(s) 369
HpyCH4V TGCA 4 cut(s) 63, 378, 503, 1044
HpyF10VI GCNNNNNNNGC 3 cut(s) 262, 500, 728
HpyF3I CTNAG 6 cut(s) 415, 603, 726, 911, 949, 1012
HpySE526I ACGT 1 cut(s) 369
Hsp92I GRCGYC 1 cut(s) 311
Hsp92II CATG 6 cut(s) 79, 479, 584, 639, 946, 1011
HspAI GCGC 1 cut(s) 1017
KroI GCCGGC 1 cut(s) 256
KroNI GCCGGC 1 cut(s) 258
Ksp22I TGATCA 2 cut(s) 654, 742
Kzo9I GATC 6 cut(s) 78, 183, 406, 632, 654, 742
LmnI GCTCC 2 cut(s) 14, 307
Lsp1109I GCAGC 4 cut(s) 250, 478, 515, 709
MaeI CTAG 2 cut(s) 420, 839
MaeII ACGT 1 cut(s) 369
MaeIII GTNAC 2 cut(s) 232, 665
MalI GATC 6 cut(s) 80, 185, 408, 634, 656, 744
MbiI CCGCTC 1 cut(s) 201
MboI GATC 6 cut(s) 78, 183, 406, 632, 654, 742
MboII GAAGA 4 cut(s) 256, 262, 359, 773
MfeI CAATTG 1 cut(s) 1109
MflI RGATCY 1 cut(s) 183
MhlI GDGCHC 1 cut(s) 11
MluCI AATT 6 cut(s) 561, 573, 777, 825, 885, 1109
MlyI GAGTC 1 cut(s) 593
MmeI TCCRAC 1 cut(s) 308
MroNI GCCGGC 1 cut(s) 256
MseI TTAA 4 cut(s) 426, 576, 612, 873
MslI CAYNNNNRTG 3 cut(s) 480, 941, 1094
MspA1I CMGCKG 1 cut(s) 241
MspI CCGG 5 cut(s) 86, 221, 257, 275, 324
MspR9I CCNGG 1 cut(s) 222
MunI CAATTG 1 cut(s) 1109
MvnI CGCG 1 cut(s) 1074
MwoI GCNNNNNNNGC 3 cut(s) 262, 500, 728
NaeI GCCGGC 1 cut(s) 258
NciI CCSGG 1 cut(s) 222
NdeII GATC 6 cut(s) 78, 183, 406, 632, 654, 742
NgoMIV GCCGGC 1 cut(s) 256
NlaIII CATG 6 cut(s) 79, 479, 584, 639, 946, 1011
NlaIV GGNNCC 4 cut(s) 90, 185, 219, 869
NmeAIII GCCGAG 2 cut(s) 222, 520
NmuCI GTSAC 1 cut(s) 232
PcsI WCGNNNNNNNCGW 2 cut(s) 161, 1092
PdiI GCCGGC 1 cut(s) 258
PfeI GAWTC 5 cut(s) 178, 190, 440, 855, 915
PkrI GCNGC 6 cut(s) 117, 240, 493, 505, 724, 1076
PleI GAGTC 1 cut(s) 593
PmaCI CACGTG 1 cut(s) 370
PmlI CACGTG 1 cut(s) 370
PpsI GAGTC 1 cut(s) 593
Ppu21I YACGTR 1 cut(s) 370
PspCI CACGTG 1 cut(s) 370
PspN4I GGNNCC 4 cut(s) 90, 185, 219, 869
PspPI GGNCC 3 cut(s) 88, 218, 730
PsuI RGATCY 1 cut(s) 183
PvuII CAGCTG 1 cut(s) 241
RsaI GTAC 2 cut(s) 362, 909
RsaNI GTAC 2 cut(s) 361, 908
RseI CAYNNNNRTG 3 cut(s) 480, 941, 1094
SaqAI TTAA 4 cut(s) 426, 576, 612, 873
SatI GCNGC 6 cut(s) 116, 239, 492, 504, 723, 1075
Sau3AI GATC 6 cut(s) 78, 183, 406, 632, 654, 742
Sau96I GGNCC 3 cut(s) 88, 218, 730
ScaI AGTACT 1 cut(s) 909
SchI GAGTC 1 cut(s) 593
ScrFI CCNGG 1 cut(s) 222
SduI GDGCHC 1 cut(s) 11
SinI GGWCC 1 cut(s) 218
SmiMI CAYNNNNRTG 3 cut(s) 480, 941, 1094
SmlI CTYRAG 1 cut(s) 706
SmoI CTYRAG 1 cut(s) 706
Sse9I AATT 6 cut(s) 561, 573, 777, 825, 885, 1109
SsiI CCGC 7 cut(s) 44, 113, 116, 194, 201, 305, 1074
SspMI CTAG 2 cut(s) 420, 839
StyD4I CCNGG 1 cut(s) 220
TaaI ACNGT 1 cut(s) 665
TaiI ACGT 1 cut(s) 372
TaqI TCGA 1 cut(s) 801
TasI AATT 6 cut(s) 561, 573, 777, 825, 885, 1109
TatI WGTACW 1 cut(s) 907
TauI GCSGC 2 cut(s) 118, 1077
TfiI GAWTC 5 cut(s) 178, 190, 440, 855, 915
Tru1I TTAA 4 cut(s) 426, 576, 612, 873
Tru9I TTAA 4 cut(s) 426, 576, 612, 873
TscAI CASTG 3 cut(s) 237, 718, 993
TseFI GTSAC 1 cut(s) 232
TseI GCWGC 4 cut(s) 238, 491, 503, 722
Tsp45I GTSAC 1 cut(s) 232
TspDTI ATGAA 4 cut(s) 549, 573, 925, 996
TspGWI ACGGA 2 cut(s) 150, 611
TspRI CASTG 3 cut(s) 237, 718, 993
VpaK11BI GGWCC 1 cut(s) 218
XapI RAATTY 1 cut(s) 825
XspI CTAG 2 cut(s) 420, 839
ZrmI AGTACT 1 cut(s) 909
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.