Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5D

Orthogroup ID

OG0011762

Physical Location & Seq

Genomic Coordinates Forward (+)

77082804 .. 77085032

Gene Structure 2229 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5DG490700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 873 bp

ATGTCGTGCTCCGTCGCGATGTCAAACTCGCCGGTATTTTCACCGCCGCCGTCTCTCTACTGCAACAAGACCTCCATGATCTCCTCGGCTCCCGAAACCCTAAACCTATCGCACCTGAAACAACAACCGTCGCAGCAATCTTCGTCTTCGCCGAATTCGGCTCCGCCGTCGCCGTCCCCCTCGTCGCCGTTCAGGCTTCGGATTCCGAAGTCTCTGAGCACGCTATCTGCGGTTCCCGGATCTTCGTCTCCGGTGACGCAATTGAAGAGGAAGCGACCGGCGAAGCTTTGCATTCCGATTGTATCGACTGGATTTGGGGCTGCTCAGGCGACGCCGTCTGCGGCGGCGTGGAGAGAGCTGGTGGAGGAAGATAGAGAAGGGTACTTCTCCGTGTATTGTAAGAAAGGGAGGAGAGAGGCTTTAGAGGATCGGTACTCAGCCACTCTTAATCTTCAAGGTGATCCCAAACAGGCGTTTTTCGGTGTATTTGATGGGCATGGAGGTGCAAAAGCTGCTGAATTTGCAGCTCAGAACTTGGGAAAAAACATTTTAGATGAAGTTGTGAGGAGGGACGACGACGACGATAAATTTGAGGAATCTGTCAAGCATGGTTACCTGAATACAGATTCTGATTTTCTTAAAGAGGATTTCAGCGGTGGATCATGCTGTGTGACAGCTATGATCAGGAACGGAACCCTTGTTGTGTCCAATGCTGGTGATTGCCGTGCTGTAATGAGCAGAGGAGGTGCTGCAGAGGCTCTCACATCTGATCATCGACCGGCAAGGGAAGATGAAAGGACCAGAATTGAGAACTTGGTATGTAGTAAGCTTTCTTCCTCTATAGATTCTTACACATTATGGATCATAAATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0003674 GO:0003824 GO:0004721 GO:0004722 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006464 GO:0006470 GO:0006793 GO:0006796 GO:0006807 GO:0006950 GO:0006952 GO:0007154 GO:0007165 GO:0008150 GO:0008152 GO:0009536 GO:0009605 GO:0009607 GO:0009611 GO:0009620 GO:0009719 GO:0009725 GO:0009737 GO:0009738 GO:0009755 GO:0009987 GO:0010033 GO:0016311 GO:0016787 GO:0016788 GO:0016791 GO:0019538 GO:0023052 GO:0032870 GO:0033993 GO:0036211 GO:0042221 GO:0042578 GO:0043170 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044444 GO:0044464 GO:0050789 GO:0050794 GO:0050832 GO:0050896 GO:0051704 GO:0051707 GO:0051716 GO:0065007 GO:0070887 GO:0071215 GO:0071229 GO:0071310 GO:0071396 GO:0071495 GO:0071704 GO:0097305 GO:0097306 GO:0098542 GO:0140096 GO:1901564 GO:1901700 GO:1901701

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PP2C

Protein Analysis

290

Amino Acids

31.29

Weight (kDa)

6.89

Isoelectric Point (pI)

65.61

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PP2C	PF00481	132 - 272	8.9e-27	Protein phosphatase 2C

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0011762)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G34120
fragaria_vesca	FvH4_3g38990 FvH4_3g38990 FvH4_3g38990
malus_domestica	MD03G1065600.v1.1 MD11G1070500.v1.1
prunus_persica	Prupe.6G054500_v2.0.a1
pyrus_communis	pycom03g05260 pycom11g05910
rosa_chinensis	RchiOBHm_Chr5g0070291
rosa_laevigata	RLG00000036123
rosa_multiflora	Rmu_sc0009590.1_g000002
rosa_roxburghii	Rroxscaffold_1G00010860
rosa_rugosa	Rorug05G0404900
rosa_samantha	Rh5AG460100 Rh5BG478700 Rh5CG502900 Rh5DG490700
rosa_wichuraiana	Rw5G042910

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	17
AciI	CCGC	7 cut(s)	44, 47, 164, 230, 341, 344, 654
AclWI	GGATC	5 cut(s)	247, 435, 455, 667, 869
AcsI	RAATTY	3 cut(s)	154, 518, 587
AcyI	GRCGYC	1 cut(s)	332
AfaI	GTAC	2 cut(s)	383, 434
AgsI	TTSAA	2 cut(s)	265, 455
AluBI	AGCT	6 cut(s)	286, 358, 512, 527, 677, 829
AluI	AGCT	6 cut(s)	286, 358, 512, 527, 677, 829
Alw21I	GWGCWC	2 cut(s)	11, 221
Alw26I	GTCTC	3 cut(s)	57, 216, 252
AlwI	GGATC	5 cut(s)	247, 435, 455, 667, 869
AlwNI	CAGNNNCTG	1 cut(s)	629
ApeKI	GCWGC	5 cut(s)	133, 320, 512, 524, 749
ApoI	RAATTY	3 cut(s)	154, 518, 587
ArsI	GACNNNNNNTTYG	2 cut(s)	572, 604
AspS9I	GGNCC	1 cut(s)	798
AsuC2I	CCSGG	1 cut(s)	237
AsuHPI	GGTGA	4 cut(s)	33, 265, 470, 728
AvaII	GGWCC	1 cut(s)	798
BarI	GAAGNNNNNNTAC	2 cut(s)	817, 849
BbsI	GAAGAC	1 cut(s)	138
Bbv12I	GWGCWC	2 cut(s)	11, 221
BbvI	GCAGC	5 cut(s)	145, 307, 499, 536, 736
BccI	CCATC	1 cut(s)	485
BceAI	ACGGC	6 cut(s)	34, 151, 157, 172, 319, 708
BclI	TGATCA	2 cut(s)	681, 769
BcnI	CCSGG	1 cut(s)	237
BcoDI	GTCTC	3 cut(s)	57, 216, 252
BfmI	CTRYAG	2 cut(s)	750, 840
BglI	GCCNNNNNGGC	1 cut(s)	193
BisI	GCNGC	8 cut(s)	47, 134, 321, 342, 345, 513, 525, 750
BlsI	GCNGC	8 cut(s)	48, 135, 322, 343, 346, 514, 526, 751
Bme1390I	CCNGG	1 cut(s)	237
Bme18I	GGWCC	1 cut(s)	798
BmgT120I	GGNCC	1 cut(s)	798
BmiI	GGNNCC	4 cut(s)	90, 162, 234, 694
BmrFI	CCNGG	1 cut(s)	237
BpiI	GAAGAC	1 cut(s)	138
Bpu10I	CCTNAGC	1 cut(s)	324
BpuMI	CCSGG	1 cut(s)	237
BsaHI	GRCGYC	1 cut(s)	332
BsaJI	CCNNGG	1 cut(s)	84
BsaWI	WCCGGW	1 cut(s)	250
BsaXI	ACNNNNNCTCC	2 cut(s)	56, 86
Bse118I	RCCGGY	3 cut(s)	31, 277, 778
Bse1I	ACTGG	1 cut(s)	313
BseDI	CCNNGG	1 cut(s)	84
BseMII	CTCAG	4 cut(s)	206, 338, 450, 542
BseNI	ACTGG	1 cut(s)	313
BseRI	GAGGAG	4 cut(s)	73, 424, 580, 756
BseXI	GCAGC	5 cut(s)	145, 307, 499, 536, 736
Bsh1236I	CGCG	1 cut(s)	17
Bsh1285I	CGRYCG	2 cut(s)	278, 779
BsiEI	CGRYCG	2 cut(s)	278, 779
BsiHKAI	GWGCWC	2 cut(s)	11, 221
BsiSI	CCGG	5 cut(s)	32, 237, 251, 278, 779
BslFI	GGGAC	2 cut(s)	160, 584
BsmAI	GTCTC	3 cut(s)	57, 216, 252
BsmBI	CGTCTC	2 cut(s)	57, 252
BsmFI	GGGAC	2 cut(s)	160, 584
BsmI	GAATGC	1 cut(s)	291
Bsp1286I	GDGCHC	2 cut(s)	11, 221
Bsp143I	GATC	8 cut(s)	78, 239, 427, 460, 659, 681, 769, 861
Bsp68I	TCGCGA	1 cut(s)	17
BspACI	CCGC	7 cut(s)	44, 47, 164, 230, 341, 344, 654
BspCNI	CTCAG	4 cut(s)	207, 337, 449, 541
BspFNI	CGCG	1 cut(s)	17
BspLI	GGNNCC	4 cut(s)	90, 162, 234, 694
BspMAI	CTGCAG	1 cut(s)	754
BspPI	GGATC	5 cut(s)	247, 435, 455, 667, 869
BsrFI	RCCGGY	3 cut(s)	31, 277, 778
BsrI	ACTGG	1 cut(s)	313
BssAI	RCCGGY	3 cut(s)	31, 277, 778
BssECI	CCNNGG	1 cut(s)	84
BssMI	GATC	8 cut(s)	78, 239, 427, 460, 659, 681, 769, 861
BssNI	GRCGYC	1 cut(s)	332
Bst4CI	ACNGT	1 cut(s)	129
Bst6I	CTCTTC	1 cut(s)	260
BstACI	GRCGYC	1 cut(s)	332
BstAPI	GCANNNNNTGC	1 cut(s)	512
BstC8I	GCNNGC	1 cut(s)	221
BstDEI	CTNAG	4 cut(s)	215, 324, 436, 528
BstEII	GGTNACC	1 cut(s)	611
BstFNI	CGCG	1 cut(s)	17
BstKTI	GATC	8 cut(s)	81, 242, 430, 463, 662, 684, 772, 864
BstMAI	GTCTC	3 cut(s)	57, 216, 252
BstMBI	GATC	8 cut(s)	78, 239, 427, 460, 659, 681, 769, 861
BstMCI	CGRYCG	2 cut(s)	278, 779
BstMWI	GCNNNNNNNGC	5 cut(s)	193, 326, 512, 521, 755
BstPI	GGTNACC	1 cut(s)	611
BstSCI	CCNGG	1 cut(s)	235
BstSFI	CTRYAG	2 cut(s)	750, 840
BstUI	CGCG	1 cut(s)	17
BstV1I	GCAGC	5 cut(s)	145, 307, 499, 536, 736
BstV2I	GAAGAC	1 cut(s)	138
BstX2I	RGATCY	1 cut(s)	239
BstYI	RGATCY	1 cut(s)	239
BtgZI	GCGATG	1 cut(s)	32
BtuMI	TCGCGA	1 cut(s)	17
Cac8I	GCNNGC	1 cut(s)	221
CaiI	CAGNNNCTG	1 cut(s)	629
Cfr10I	RCCGGY	3 cut(s)	31, 277, 778
Cfr13I	GGNCC	1 cut(s)	798
CseI	GACGC	2 cut(s)	265, 340
Csp6I	GTAC	2 cut(s)	382, 433
CviAII	CATG	4 cut(s)	76, 497, 608, 663
CviQI	GTAC	2 cut(s)	382, 433
DdeI	CTNAG	4 cut(s)	215, 324, 436, 528
DpnI	GATC	8 cut(s)	80, 241, 429, 462, 661, 683, 771, 863
DpnII	GATC	8 cut(s)	78, 239, 427, 460, 659, 681, 769, 861
Eam1104I	CTCTTC	1 cut(s)	260
EarI	CTCTTC	1 cut(s)	260
EciI	GGCGGA	1 cut(s)	153
Eco47I	GGWCC	1 cut(s)	798
Eco91I	GGTNACC	1 cut(s)	611
EcoO65I	GGTNACC	1 cut(s)	611
EcoRI	GAATTC	1 cut(s)	154
Esp3I	CGTCTC	2 cut(s)	57, 252
FaeI	CATG	4 cut(s)	79, 500, 611, 666
FaiI	YATR	9 cut(s)	77, 498, 609, 664, 680, 820, 842, 859, 866
FaqI	GGGAC	2 cut(s)	160, 584
FatI	CATG	4 cut(s)	75, 496, 607, 662
FbaI	TGATCA	2 cut(s)	681, 769
Fnu4HI	GCNGC	8 cut(s)	47, 134, 321, 342, 345, 513, 525, 750
Fsp4HI	GCNGC	8 cut(s)	47, 134, 321, 342, 345, 513, 525, 750
GluI	GCNGC	8 cut(s)	47, 134, 321, 342, 345, 513, 525, 750
HapII	CCGG	5 cut(s)	32, 237, 251, 278, 779
HgaI	GACGC	2 cut(s)	265, 340
Hin1I	GRCGYC	1 cut(s)	332
Hin1II	CATG	4 cut(s)	79, 500, 611, 666
HindIII	AAGCTT	2 cut(s)	284, 827
HinfI	GANTC	4 cut(s)	202, 596, 626, 845
HpaII	CCGG	5 cut(s)	32, 237, 251, 278, 779
HphI	GGTGA	4 cut(s)	33, 265, 470, 728
Hpy188I	TCNGA	7 cut(s)	201, 207, 216, 297, 531, 631, 769
Hpy188III	TCNNGA	3 cut(s)	16, 92, 685
Hpy99I	CGWCG	8 cut(s)	17, 133, 172, 187, 334, 578, 581, 584
HpyAV	CCTTC	1 cut(s)	371
HpyCH4III	ACNGT	1 cut(s)	129
HpyCH4V	TGCA	5 cut(s)	63, 291, 506, 524, 752
HpyF10VI	GCNNNNNNNGC	5 cut(s)	193, 326, 512, 521, 755
HpyF3I	CTNAG	4 cut(s)	215, 324, 436, 528
Hsp92I	GRCGYC	1 cut(s)	332
Hsp92II	CATG	4 cut(s)	79, 500, 611, 666
Ksp22I	TGATCA	2 cut(s)	681, 769
Kzo9I	GATC	8 cut(s)	78, 239, 427, 460, 659, 681, 769, 861
LmnI	GCTCC	3 cut(s)	14, 94, 166
Lsp1109I	GCAGC	5 cut(s)	145, 307, 499, 536, 736
MaeIII	GTNAC	3 cut(s)	253, 611, 670
MalI	GATC	8 cut(s)	80, 241, 429, 462, 661, 683, 771, 863
MboI	GATC	8 cut(s)	78, 239, 427, 460, 659, 681, 769, 861
MboII	GAAGA	8 cut(s)	132, 138, 234, 277, 380, 443, 800, 825
MfeI	CAATTG	1 cut(s)	260
MflI	RGATCY	1 cut(s)	239
MhlI	GDGCHC	2 cut(s)	11, 221
MluCI	AATT	6 cut(s)	154, 260, 518, 587, 804, 868
MseI	TTAA	2 cut(s)	447, 639
MslI	CAYNNNNRTG	1 cut(s)	501
MspA1I	CMGCKG	1 cut(s)	654
MspI	CCGG	5 cut(s)	32, 237, 251, 278, 779
MspR9I	CCNGG	1 cut(s)	237
MunI	CAATTG	1 cut(s)	260
Mva1269I	GAATGC	1 cut(s)	291
MvnI	CGCG	1 cut(s)	17
MwoI	GCNNNNNNNGC	5 cut(s)	193, 326, 512, 521, 755
NciI	CCSGG	1 cut(s)	237
NdeII	GATC	8 cut(s)	78, 239, 427, 460, 659, 681, 769, 861
NlaIII	CATG	4 cut(s)	79, 500, 611, 666
NlaIV	GGNNCC	4 cut(s)	90, 162, 234, 694
NmeAIII	GCCGAG	1 cut(s)	65
NmuCI	GTSAC	2 cut(s)	253, 670
NruI	TCGCGA	1 cut(s)	17
PcsI	WCGNNNNNNNCGW	3 cut(s)	149, 164, 579
PctI	GAATGC	1 cut(s)	291
PfeI	GAWTC	4 cut(s)	202, 596, 626, 845
PflFI	GACNNNGTC	1 cut(s)	334
PfoI	TCCNGGA	1 cut(s)	235
PkrI	GCNGC	8 cut(s)	48, 135, 322, 343, 346, 514, 526, 751
PspEI	GGTNACC	1 cut(s)	611
PspN4I	GGNNCC	4 cut(s)	90, 162, 234, 694
PspPI	GGNCC	1 cut(s)	798
PstI	CTGCAG	1 cut(s)	754
PstNI	CAGNNNCTG	1 cut(s)	629
PsuI	RGATCY	1 cut(s)	239
PsyI	GACNNNGTC	1 cut(s)	334
RruI	TCGCGA	1 cut(s)	17
RsaI	GTAC	2 cut(s)	383, 434
RsaNI	GTAC	2 cut(s)	382, 433
RseI	CAYNNNNRTG	1 cut(s)	501
SaqAI	TTAA	2 cut(s)	447, 639
SatI	GCNGC	8 cut(s)	47, 134, 321, 342, 345, 513, 525, 750
Sau3AI	GATC	8 cut(s)	78, 239, 427, 460, 659, 681, 769, 861
Sau96I	GGNCC	1 cut(s)	798
ScrFI	CCNGG	1 cut(s)	237
SduI	GDGCHC	2 cut(s)	11, 221
SfcI	CTRYAG	2 cut(s)	750, 840
SinI	GGWCC	1 cut(s)	798
SmiMI	CAYNNNNRTG	1 cut(s)	501
Sse9I	AATT	6 cut(s)	154, 260, 518, 587, 804, 868
SsiI	CCGC	7 cut(s)	44, 47, 164, 230, 341, 344, 654
StyD4I	CCNGG	1 cut(s)	235
TaaI	ACNGT	1 cut(s)	129
TaqI	TCGA	2 cut(s)	305, 775
TasI	AATT	6 cut(s)	154, 260, 518, 587, 804, 868
TauI	GCSGC	3 cut(s)	49, 344, 347
TfiI	GAWTC	4 cut(s)	202, 596, 626, 845
Tru1I	TTAA	2 cut(s)	447, 639
Tru9I	TTAA	2 cut(s)	447, 639
TseFI	GTSAC	2 cut(s)	253, 670
TseI	GCWGC	5 cut(s)	133, 320, 512, 524, 749
Tsp45I	GTSAC	2 cut(s)	253, 670
TspDTI	ATGAA	2 cut(s)	570, 807
TspGWI	ACGGA	2 cut(s)	379, 705
Tth111I	GACNNNGTC	1 cut(s)	334
VpaK11BI	GGWCC	1 cut(s)	798
XapI	RAATTY	3 cut(s)	154, 518, 587

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.