Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5A

Orthogroup ID

OG0011762

Physical Location & Seq

Genomic Coordinates Forward (+)

78854350 .. 78856613

Gene Structure 2264 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5AG460100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 870 bp

ATGTCGTGCTCCGTCGCGGTGTCGAACTCGCCGGTATTTTCACCGCCGCCGTCTCTCTTCTGCAACAAGACCTCCATGATCTCCTCGACTCCCGAAACCCTAAACCTATCGCACCTGAAACAGCAACCGTCGCAGCAATCTTCGTCTTCGCCGAATTCTGCTCCGCCGTCGCCGTCGTCGTCGTCGCCGTTCAGGCTTCGGATCCCGAAGTCTCTGAGTATGCTATCTGCGGTTCCCGGATCTTCGTCTCCGGTGACGCAATTGAAGAGGAAGCGGCCGGCGAAGCTTTGCATTCCGATTGTATCGACTGGATTTGGGGCTGCTCAGGCGACGCCGTCTGCGGCGGCGTGGAGAGAGCTGGTGGAGGAAGATAGAGAAGGGTACTTCTCCGTGTATTGTAAGAAAGGGAGGAGAGAGGCTTTAGAGGATCGGTACTCAGCCACTCTTAATCTTCAAGGTGATCCCAAACAGGCGTTTTTCGGTGTATTTGATGGGCATGGAGGTGCAAAAGCTGCTGAATTTGCAGCTCAGAACTTGGGAAAAAACATTTTAGATGAAGTTGTGAGGAGGGACGACGACGATAAATTTGAGGAATCTGTCAAGCATGGTTACCTGAATACAGATTCTGATTTTCTTAAAGAGGATTTCAGCGGTGGATCATGCTGTGTGACAGCTATGATCAGAAACGGAACCCTTGTTGTGTCCAATGCTGGTGATTGCCGTGCTGTAATGAGCAGAGGAGGTGCTGCAGAGGCTCTCACATCTGATCATCGACCGGCAAGGGAAGATGAAAGGACCAGAATTGAGAACTTGGTATGTAGTAAGCTTTCTTCCTCTATAGATTCTTACACATTATGGATCATAAATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0003674 GO:0003824 GO:0004721 GO:0004722 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006464 GO:0006470 GO:0006793 GO:0006796 GO:0006807 GO:0006950 GO:0006952 GO:0007154 GO:0007165 GO:0008150 GO:0008152 GO:0009536 GO:0009605 GO:0009607 GO:0009611 GO:0009620 GO:0009719 GO:0009725 GO:0009737 GO:0009738 GO:0009755 GO:0009987 GO:0010033 GO:0016311 GO:0016787 GO:0016788 GO:0016791 GO:0019538 GO:0023052 GO:0032870 GO:0033993 GO:0036211 GO:0042221 GO:0042578 GO:0043170 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044444 GO:0044464 GO:0050789 GO:0050794 GO:0050832 GO:0050896 GO:0051704 GO:0051707 GO:0051716 GO:0065007 GO:0070887 GO:0071215 GO:0071229 GO:0071310 GO:0071396 GO:0071495 GO:0071704 GO:0097305 GO:0097306 GO:0098542 GO:0140096 GO:1901564 GO:1901700 GO:1901701

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PP2C

Protein Analysis

289

Amino Acids

31.18

Weight (kDa)

7.55

Isoelectric Point (pI)

62.76

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PP2C	PF00481	132 - 271	3.5e-27	Protein phosphatase 2C

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0011762)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G34120
fragaria_vesca	FvH4_3g38990 FvH4_3g38990 FvH4_3g38990
malus_domestica	MD03G1065600.v1.1 MD11G1070500.v1.1
prunus_persica	Prupe.6G054500_v2.0.a1
pyrus_communis	pycom03g05260 pycom11g05910
rosa_chinensis	RchiOBHm_Chr5g0070291
rosa_laevigata	RLG00000036123
rosa_multiflora	Rmu_sc0009590.1_g000002
rosa_roxburghii	Rroxscaffold_1G00010860
rosa_rugosa	Rorug05G0404900
rosa_samantha	Rh5AG460100 Rh5BG478700 Rh5CG502900 Rh5DG490700
rosa_wichuraiana	Rw5G042910

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	17
AciI	CCGC	9 cut(s)	17, 44, 47, 164, 230, 274, 341, 344, 651
AclWI	GGATC	7 cut(s)	196, 209, 247, 435, 455, 664, 866
AcoI	YGGCCR	1 cut(s)	275
AcsI	RAATTY	3 cut(s)	154, 518, 584
AcyI	GRCGYC	1 cut(s)	332
AfaI	GTAC	2 cut(s)	383, 434
AgsI	TTSAA	2 cut(s)	265, 455
AluBI	AGCT	6 cut(s)	286, 358, 512, 527, 674, 826
AluI	AGCT	6 cut(s)	286, 358, 512, 527, 674, 826
Alw21I	GWGCWC	1 cut(s)	11
Alw26I	GTCTC	3 cut(s)	57, 216, 252
AlwI	GGATC	7 cut(s)	196, 209, 247, 435, 455, 664, 866
AlwNI	CAGNNNCTG	1 cut(s)	626
AoxI	GGCC	1 cut(s)	275
ApeKI	GCWGC	5 cut(s)	133, 320, 512, 524, 746
ApoI	RAATTY	3 cut(s)	154, 518, 584
ArsI	GACNNNNNNTTYG	2 cut(s)	569, 601
AspS9I	GGNCC	1 cut(s)	795
AsuC2I	CCSGG	1 cut(s)	237
AsuHPI	GGTGA	4 cut(s)	33, 265, 470, 725
AvaII	GGWCC	1 cut(s)	795
BamHI	GGATCC	1 cut(s)	201
BarI	GAAGNNNNNNTAC	2 cut(s)	814, 846
BbsI	GAAGAC	1 cut(s)	138
Bbv12I	GWGCWC	1 cut(s)	11
BbvI	GCAGC	5 cut(s)	145, 307, 499, 536, 733
BccI	CCATC	1 cut(s)	485
BceAI	ACGGC	6 cut(s)	34, 151, 157, 172, 319, 705
BclI	TGATCA	2 cut(s)	678, 766
BcnI	CCSGG	1 cut(s)	237
BcoDI	GTCTC	3 cut(s)	57, 216, 252
BfmI	CTRYAG	2 cut(s)	747, 837
BglI	GCCNNNNNGGC	1 cut(s)	193
BisI	GCNGC	9 cut(s)	47, 134, 275, 321, 342, 345, 513, 525, 747
BlsI	GCNGC	9 cut(s)	48, 135, 276, 322, 343, 346, 514, 526, 748
Bme1390I	CCNGG	1 cut(s)	237
Bme18I	GGWCC	1 cut(s)	795
BmgT120I	GGNCC	1 cut(s)	795
BmiI	GGNNCC	3 cut(s)	203, 234, 691
BmrFI	CCNGG	1 cut(s)	237
BpiI	GAAGAC	1 cut(s)	138
Bpu10I	CCTNAGC	1 cut(s)	324
BpuMI	CCSGG	1 cut(s)	237
BsaHI	GRCGYC	1 cut(s)	332
BsaWI	WCCGGW	1 cut(s)	250
BsaXI	ACNNNNNCTCC	2 cut(s)	56, 86
Bse118I	RCCGGY	3 cut(s)	31, 277, 775
Bse1I	ACTGG	1 cut(s)	313
BseMII	CTCAG	4 cut(s)	206, 338, 450, 542
BseNI	ACTGG	1 cut(s)	313
BseRI	GAGGAG	4 cut(s)	73, 424, 580, 753
BseX3I	CGGCCG	1 cut(s)	275
BseXI	GCAGC	5 cut(s)	145, 307, 499, 536, 733
Bsh1236I	CGCG	1 cut(s)	17
Bsh1285I	CGRYCG	2 cut(s)	278, 776
BshFI	GGCC	1 cut(s)	277
BsiEI	CGRYCG	2 cut(s)	278, 776
BsiHKAI	GWGCWC	1 cut(s)	11
BsiSI	CCGG	5 cut(s)	32, 237, 251, 278, 776
BslFI	GGGAC	1 cut(s)	584
BsmAI	GTCTC	3 cut(s)	57, 216, 252
BsmBI	CGTCTC	2 cut(s)	57, 252
BsmFI	GGGAC	1 cut(s)	584
BsmI	GAATGC	1 cut(s)	291
BsnI	GGCC	1 cut(s)	277
Bsp1286I	GDGCHC	1 cut(s)	11
Bsp143I	GATC	9 cut(s)	78, 201, 239, 427, 460, 656, 678, 766, 858
BspACI	CCGC	9 cut(s)	17, 44, 47, 164, 230, 274, 341, 344, 651
BspANI	GGCC	1 cut(s)	277
BspCNI	CTCAG	4 cut(s)	207, 337, 449, 541
BspFNI	CGCG	1 cut(s)	17
BspLI	GGNNCC	3 cut(s)	203, 234, 691
BspMAI	CTGCAG	1 cut(s)	751
BspPI	GGATC	7 cut(s)	196, 209, 247, 435, 455, 664, 866
BsrFI	RCCGGY	3 cut(s)	31, 277, 775
BsrI	ACTGG	1 cut(s)	313
BssAI	RCCGGY	3 cut(s)	31, 277, 775
BssMI	GATC	9 cut(s)	78, 201, 239, 427, 460, 656, 678, 766, 858
BssNI	GRCGYC	1 cut(s)	332
Bst4CI	ACNGT	1 cut(s)	129
Bst6I	CTCTTC	2 cut(s)	62, 260
BstACI	GRCGYC	1 cut(s)	332
BstAPI	GCANNNNNTGC	1 cut(s)	512
BstC8I	GCNNGC	1 cut(s)	279
BstDEI	CTNAG	4 cut(s)	215, 324, 436, 528
BstEII	GGTNACC	1 cut(s)	608
BstFNI	CGCG	1 cut(s)	17
BstKTI	GATC	9 cut(s)	81, 204, 242, 430, 463, 659, 681, 769, 861
BstMAI	GTCTC	3 cut(s)	57, 216, 252
BstMBI	GATC	9 cut(s)	78, 201, 239, 427, 460, 656, 678, 766, 858
BstMCI	CGRYCG	2 cut(s)	278, 776
BstMWI	GCNNNNNNNGC	7 cut(s)	130, 193, 283, 326, 512, 521, 752
BstPI	GGTNACC	1 cut(s)	608
BstSCI	CCNGG	1 cut(s)	235
BstSFI	CTRYAG	2 cut(s)	747, 837
BstUI	CGCG	1 cut(s)	17
BstV1I	GCAGC	5 cut(s)	145, 307, 499, 536, 733
BstV2I	GAAGAC	1 cut(s)	138
BstX2I	RGATCY	2 cut(s)	201, 239
BstYI	RGATCY	2 cut(s)	201, 239
BstZI	CGGCCG	1 cut(s)	275
BsuRI	GGCC	1 cut(s)	277
Cac8I	GCNNGC	1 cut(s)	279
CaiI	CAGNNNCTG	1 cut(s)	626
Cfr10I	RCCGGY	3 cut(s)	31, 277, 775
Cfr13I	GGNCC	1 cut(s)	795
CseI	GACGC	2 cut(s)	265, 340
Csp6I	GTAC	2 cut(s)	382, 433
CviAII	CATG	4 cut(s)	76, 497, 605, 660
CviQI	GTAC	2 cut(s)	382, 433
DdeI	CTNAG	4 cut(s)	215, 324, 436, 528
DpnI	GATC	9 cut(s)	80, 203, 241, 429, 462, 658, 680, 768, 860
DpnII	GATC	9 cut(s)	78, 201, 239, 427, 460, 656, 678, 766, 858
EaeI	YGGCCR	1 cut(s)	275
EagI	CGGCCG	1 cut(s)	275
Eam1104I	CTCTTC	2 cut(s)	62, 260
EarI	CTCTTC	2 cut(s)	62, 260
EciI	GGCGGA	1 cut(s)	153
EclXI	CGGCCG	1 cut(s)	275
Eco47I	GGWCC	1 cut(s)	795
Eco52I	CGGCCG	1 cut(s)	275
Eco91I	GGTNACC	1 cut(s)	608
EcoO65I	GGTNACC	1 cut(s)	608
EcoRI	GAATTC	1 cut(s)	154
Esp3I	CGTCTC	2 cut(s)	57, 252
FaeI	CATG	4 cut(s)	79, 500, 608, 663
FaqI	GGGAC	1 cut(s)	584
FatI	CATG	4 cut(s)	75, 496, 604, 659
FbaI	TGATCA	2 cut(s)	678, 766
Fnu4HI	GCNGC	9 cut(s)	47, 134, 275, 321, 342, 345, 513, 525, 747
Fsp4HI	GCNGC	9 cut(s)	47, 134, 275, 321, 342, 345, 513, 525, 747
GluI	GCNGC	9 cut(s)	47, 134, 275, 321, 342, 345, 513, 525, 747
HaeIII	GGCC	1 cut(s)	277
HapII	CCGG	5 cut(s)	32, 237, 251, 278, 776
HgaI	GACGC	2 cut(s)	265, 340
Hin1I	GRCGYC	1 cut(s)	332
Hin1II	CATG	4 cut(s)	79, 500, 608, 663
HindIII	AAGCTT	2 cut(s)	284, 824
HinfI	GANTC	4 cut(s)	88, 593, 623, 842
HpaII	CCGG	5 cut(s)	32, 237, 251, 278, 776
HphI	GGTGA	4 cut(s)	33, 265, 470, 725
Hpy188I	TCNGA	7 cut(s)	201, 216, 297, 531, 628, 683, 766
Hpy188III	TCNNGA	2 cut(s)	92, 205
HpyAV	CCTTC	1 cut(s)	371
HpyCH4III	ACNGT	1 cut(s)	129
HpyCH4V	TGCA	5 cut(s)	63, 291, 506, 524, 749
HpyF10VI	GCNNNNNNNGC	7 cut(s)	130, 193, 283, 326, 512, 521, 752
HpyF3I	CTNAG	4 cut(s)	215, 324, 436, 528
Hsp92I	GRCGYC	1 cut(s)	332
Hsp92II	CATG	4 cut(s)	79, 500, 608, 663
KroI	GCCGGC	1 cut(s)	277
KroNI	GCCGGC	1 cut(s)	279
Ksp22I	TGATCA	2 cut(s)	678, 766
Kzo9I	GATC	9 cut(s)	78, 201, 239, 427, 460, 656, 678, 766, 858
LmnI	GCTCC	2 cut(s)	14, 166
Lsp1109I	GCAGC	5 cut(s)	145, 307, 499, 536, 733
MaeIII	GTNAC	3 cut(s)	253, 608, 667
MalI	GATC	9 cut(s)	80, 203, 241, 429, 462, 658, 680, 768, 860
MboI	GATC	9 cut(s)	78, 201, 239, 427, 460, 656, 678, 766, 858
MboII	GAAGA	9 cut(s)	49, 132, 138, 234, 277, 380, 443, 797, 822
MfeI	CAATTG	1 cut(s)	260
MflI	RGATCY	2 cut(s)	201, 239
MhlI	GDGCHC	1 cut(s)	11
MluCI	AATT	6 cut(s)	154, 260, 518, 584, 801, 865
MlyI	GAGTC	1 cut(s)	82
MroNI	GCCGGC	1 cut(s)	277
MseI	TTAA	2 cut(s)	447, 636
MslI	CAYNNNNRTG	1 cut(s)	501
MspA1I	CMGCKG	1 cut(s)	651
MspI	CCGG	5 cut(s)	32, 237, 251, 278, 776
MspR9I	CCNGG	1 cut(s)	237
MunI	CAATTG	1 cut(s)	260
Mva1269I	GAATGC	1 cut(s)	291
MvnI	CGCG	1 cut(s)	17
MwoI	GCNNNNNNNGC	7 cut(s)	130, 193, 283, 326, 512, 521, 752
NaeI	GCCGGC	1 cut(s)	279
NciI	CCSGG	1 cut(s)	237
NdeII	GATC	9 cut(s)	78, 201, 239, 427, 460, 656, 678, 766, 858
NgoMIV	GCCGGC	1 cut(s)	277
NlaIII	CATG	4 cut(s)	79, 500, 608, 663
NlaIV	GGNNCC	3 cut(s)	203, 234, 691
NmuCI	GTSAC	2 cut(s)	253, 667
PcsI	WCGNNNNNNNCGW	3 cut(s)	149, 176, 185
PctI	GAATGC	1 cut(s)	291
PdiI	GCCGGC	1 cut(s)	279
PfeI	GAWTC	3 cut(s)	593, 623, 842
PflFI	GACNNNGTC	1 cut(s)	334
PfoI	TCCNGGA	1 cut(s)	235
PkrI	GCNGC	9 cut(s)	48, 135, 276, 322, 343, 346, 514, 526, 748
PleI	GAGTC	1 cut(s)	82
PpsI	GAGTC	1 cut(s)	82
PspEI	GGTNACC	1 cut(s)	608
PspN4I	GGNNCC	3 cut(s)	203, 234, 691
PspPI	GGNCC	1 cut(s)	795
PstI	CTGCAG	1 cut(s)	751
PstNI	CAGNNNCTG	1 cut(s)	626
PsuI	RGATCY	2 cut(s)	201, 239
PsyI	GACNNNGTC	1 cut(s)	334
RsaI	GTAC	2 cut(s)	383, 434
RsaNI	GTAC	2 cut(s)	382, 433
RseI	CAYNNNNRTG	1 cut(s)	501
SaqAI	TTAA	2 cut(s)	447, 636
SatI	GCNGC	9 cut(s)	47, 134, 275, 321, 342, 345, 513, 525, 747
Sau3AI	GATC	9 cut(s)	78, 201, 239, 427, 460, 656, 678, 766, 858
Sau96I	GGNCC	1 cut(s)	795
SchI	GAGTC	1 cut(s)	82
ScrFI	CCNGG	1 cut(s)	237
SduI	GDGCHC	1 cut(s)	11
SfcI	CTRYAG	2 cut(s)	747, 837
SinI	GGWCC	1 cut(s)	795
SmiMI	CAYNNNNRTG	1 cut(s)	501
Sse9I	AATT	6 cut(s)	154, 260, 518, 584, 801, 865
SsiI	CCGC	9 cut(s)	17, 44, 47, 164, 230, 274, 341, 344, 651
StyD4I	CCNGG	1 cut(s)	235
TaaI	ACNGT	1 cut(s)	129
TaqI	TCGA	4 cut(s)	23, 86, 305, 772
TasI	AATT	6 cut(s)	154, 260, 518, 584, 801, 865
TauI	GCSGC	4 cut(s)	49, 277, 344, 347
TfiI	GAWTC	3 cut(s)	593, 623, 842
Tru1I	TTAA	2 cut(s)	447, 636
Tru9I	TTAA	2 cut(s)	447, 636
TseFI	GTSAC	2 cut(s)	253, 667
TseI	GCWGC	5 cut(s)	133, 320, 512, 524, 746
Tsp45I	GTSAC	2 cut(s)	253, 667
TspDTI	ATGAA	2 cut(s)	570, 804
TspGWI	ACGGA	2 cut(s)	379, 702
Tth111I	GACNNNGTC	1 cut(s)	334
VpaK11BI	GGWCC	1 cut(s)	795
XapI	RAATTY	3 cut(s)	154, 518, 584

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.