FvH4_3g39160

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb3
OG0016046
Physical Location & Seq
Forward (+)
33381708 .. 33382568
861 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_3g39160.t1

Sequence Viewer

Length: 405 bp
ATGATATTAGCTCTAACGGCAACATGGGCTGCAGCAGCAGCAGAACCTCATCACAAACTTCCAGCTATGTCATCAGCAGTAGTACCTTCCATGGCTCCTAATAACCAAGATGGGATTCTGTTCTTGGATGACAAGCACTATGCTTTGCATGGGGAGATCATGTTGGTGGTGCTTATTGTTCTTTTTATCGCTTTCGTCTCCTGTCTTGCTGTGGTCACTCGTCTCCGGCGAGCTAGGGCAGTCGAGGAGGACATGGTGTCGAAGAAGCCGTGCAGCTGTTTTGAATTGCTATGCTGTTTGGTGAGGAAGAAGAGGAACAGAGGAGATGAGGATGCTGCTGCACCAGCTGCAGCTCCACTTAGGGGCAATAATGAGATACCAGAACGTCTACCTCATCAGAAGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

135

Amino Acids

14.67

Weight (kDa)

8.34

Isoelectric Point (pI)

58.23

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0016046)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G58570
fragaria_vesca FvH4_3g39160
malus_domestica MD11G1066400.v1.1
prunus_persica Prupe.6G052800_v2.0.a1
pyrus_communis pycom03g05050 pycom11g05620 pycom11g05630
rosa_chinensis RchiOBHm_Chr5g0070601
rosa_laevigata RLG00000036141
rosa_roxburghii Rroxscaffold_1G00010640
rosa_rugosa Rorug05G0407000
rosa_samantha Rh5BG480500 Rh5CG504800 Rh5DG492700
rosa_wichuraiana Rw5G043060

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 388
AfaI GTAC 1 cut(s) 84
AfiI CCNNNNNNNGG 1 cut(s) 362
AgsI TTSAA 1 cut(s) 284
AhdI GACNNNNNGTC 1 cut(s) 256
AjuI GAANNNNNNNTTGG 2 cut(s) 99, 131
AluBI AGCT 6 cut(s) 11, 65, 233, 276, 347, 353
AluI AGCT 6 cut(s) 11, 65, 233, 276, 347, 353
Alw26I GTCTC 2 cut(s) 202, 227
ApeKI GCWGC 9 cut(s) 29, 32, 35, 38, 273, 335, 338, 347, 350
AsuHPI GGTGA 1 cut(s) 313
BbvI GCAGC 9 cut(s) 16, 44, 47, 50, 285, 322, 325, 334, 362
BccI CCATC 1 cut(s) 104
BceAI ACGGC 2 cut(s) 33, 253
BcoDI GTCTC 2 cut(s) 202, 227
BfaI CTAG 1 cut(s) 234
BfmI CTRYAG 2 cut(s) 30, 348
BisI GCNGC 9 cut(s) 30, 33, 36, 39, 274, 336, 339, 348, 351
BlsI GCNGC 9 cut(s) 31, 34, 37, 40, 275, 337, 340, 349, 352
BmeRI GACNNNNNGTC 1 cut(s) 256
BmiI GGNNCC 1 cut(s) 96
BmsI GCATC 1 cut(s) 322
BsaJI CCNNGG 1 cut(s) 90
BsaXI ACNNNNNCTCC 2 cut(s) 146, 176
Bsc4I CCNNNNNNNGG 1 cut(s) 362
BseDI CCNNGG 1 cut(s) 90
BseGI GGATG 2 cut(s) 133, 337
BseLI CCNNNNNNNGG 1 cut(s) 362
BseRI GAGGAG 2 cut(s) 260, 336
BseXI GCAGC 9 cut(s) 16, 44, 47, 50, 285, 322, 325, 334, 362
BsgI GTGCAG 2 cut(s) 292, 324
BsiSI CCGG 1 cut(s) 226
BslI CCNNNNNNNGG 1 cut(s) 362
BsmAI GTCTC 2 cut(s) 202, 227
BsmBI CGTCTC 2 cut(s) 202, 227
Bsp143I GATC 1 cut(s) 156
Bsp19I CCATGG 1 cut(s) 90
BspLI GGNNCC 1 cut(s) 96
BspMAI CTGCAG 2 cut(s) 34, 352
BssECI CCNNGG 1 cut(s) 90
BssMI GATC 1 cut(s) 156
BssT1I CCWWGG 1 cut(s) 90
Bst6I CTCTTC 1 cut(s) 305
BstAPI GCANNNNNTGC 1 cut(s) 347
BstC8I GCNNGC 1 cut(s) 231
BstDEI CTNAG 1 cut(s) 359
BstDSI CCRYGG 1 cut(s) 90
BstF5I GGATG 2 cut(s) 133, 337
BstKTI GATC 1 cut(s) 159
BstMAI GTCTC 2 cut(s) 202, 227
BstMBI GATC 1 cut(s) 156
BstMWI GCNNNNNNNGC 6 cut(s) 17, 26, 35, 38, 344, 347
BstSFI CTRYAG 2 cut(s) 30, 348
BstV1I GCAGC 9 cut(s) 16, 44, 47, 50, 285, 322, 325, 334, 362
BtgI CCRYGG 1 cut(s) 90
BtsCI GGATG 2 cut(s) 133, 337
Cac8I GCNNGC 1 cut(s) 231
Csp6I GTAC 1 cut(s) 83
CviAII CATG 5 cut(s) 24, 91, 149, 160, 253
CviJI RGCY 9 cut(s) 11, 29, 65, 95, 233, 268, 276, 347, 353
CviKI_1 RGCY 9 cut(s) 11, 29, 65, 95, 233, 268, 276, 347, 353
CviQI GTAC 1 cut(s) 83
DdeI CTNAG 1 cut(s) 359
DpnI GATC 1 cut(s) 158
DpnII GATC 1 cut(s) 156
DriI GACNNNNNGTC 1 cut(s) 256
Eam1104I CTCTTC 1 cut(s) 305
Eam1105I GACNNNNNGTC 1 cut(s) 256
EarI CTCTTC 1 cut(s) 305
Eco130I CCWWGG 1 cut(s) 90
EcoT14I CCWWGG 1 cut(s) 90
ErhI CCWWGG 1 cut(s) 90
Esp3I CGTCTC 2 cut(s) 202, 227
FaeI CATG 5 cut(s) 27, 94, 152, 163, 256
FaiI YATR 8 cut(s) 25, 68, 92, 141, 150, 161, 254, 292
FatI CATG 5 cut(s) 23, 90, 148, 159, 252
FblI GTMKAC 1 cut(s) 388
Fnu4HI GCNGC 9 cut(s) 30, 33, 36, 39, 274, 336, 339, 348, 351
FokI GGATG 2 cut(s) 140, 344
Fsp4HI GCNGC 9 cut(s) 30, 33, 36, 39, 274, 336, 339, 348, 351
FspBI CTAG 1 cut(s) 234
GluI GCNGC 9 cut(s) 30, 33, 36, 39, 274, 336, 339, 348, 351
HapII CCGG 1 cut(s) 226
Hin1II CATG 5 cut(s) 27, 94, 152, 163, 256
HinfI GANTC 1 cut(s) 115
HpaII CCGG 1 cut(s) 226
HphI GGTGA 1 cut(s) 313
Hpy166II GTNNAC 1 cut(s) 389
Hpy188I TCNGA 1 cut(s) 399
Hpy8I GTNNAC 1 cut(s) 389
HpyAV CCTTC 1 cut(s) 96
HpyCH4IV ACGT 1 cut(s) 385
HpyCH4V TGCA 5 cut(s) 32, 148, 273, 341, 350
HpyF10VI GCNNNNNNNGC 6 cut(s) 17, 26, 35, 38, 344, 347
HpyF3I CTNAG 1 cut(s) 359
HpySE526I ACGT 1 cut(s) 385
Hsp92II CATG 5 cut(s) 27, 94, 152, 163, 256
Kzo9I GATC 1 cut(s) 156
LmnI GCTCC 2 cut(s) 100, 358
LpnPI CCDG 5 cut(s) 75, 214, 239, 357, 393
Lsp1109I GCAGC 9 cut(s) 16, 44, 47, 50, 285, 322, 325, 334, 362
LweI GCATC 1 cut(s) 322
MaeI CTAG 1 cut(s) 234
MaeII ACGT 1 cut(s) 385
MaeIII GTNAC 1 cut(s) 214
MalI GATC 1 cut(s) 158
MboI GATC 1 cut(s) 156
MboII GAAGA 3 cut(s) 274, 319, 322
MluCI AATT 1 cut(s) 284
MnlI CCTC 8 cut(s) 57, 238, 241, 297, 306, 314, 322, 402
MslI CAYNNNNRTG 1 cut(s) 164
MspA1I CMGCKG 2 cut(s) 276, 347
MspI CCGG 1 cut(s) 226
MwoI GCNNNNNNNGC 6 cut(s) 17, 26, 35, 38, 344, 347
NcoI CCATGG 1 cut(s) 90
NdeII GATC 1 cut(s) 156
NlaIII CATG 5 cut(s) 27, 94, 152, 163, 256
NlaIV GGNNCC 1 cut(s) 96
NmuCI GTSAC 1 cut(s) 214
PcsI WCGNNNNNNNCGW 2 cut(s) 226, 266
PfeI GAWTC 1 cut(s) 115
PkrI GCNGC 9 cut(s) 31, 34, 37, 40, 275, 337, 340, 349, 352
PspN4I GGNNCC 1 cut(s) 96
PstI CTGCAG 2 cut(s) 34, 352
PvuII CAGCTG 2 cut(s) 276, 347
RsaI GTAC 1 cut(s) 84
RsaNI GTAC 1 cut(s) 83
RseI CAYNNNNRTG 1 cut(s) 164
SatI GCNGC 9 cut(s) 30, 33, 36, 39, 274, 336, 339, 348, 351
Sau3AI GATC 1 cut(s) 156
SfaNI GCATC 1 cut(s) 322
SfcI CTRYAG 2 cut(s) 30, 348
SmiMI CAYNNNNRTG 1 cut(s) 164
Sse9I AATT 1 cut(s) 284
SspMI CTAG 1 cut(s) 234
StyI CCWWGG 1 cut(s) 90
TaiI ACGT 1 cut(s) 388
TaqI TCGA 2 cut(s) 243, 260
TasI AATT 1 cut(s) 284
TfiI GAWTC 1 cut(s) 115
TseFI GTSAC 1 cut(s) 214
TseI GCWGC 9 cut(s) 29, 32, 35, 38, 273, 335, 338, 347, 350
Tsp45I GTSAC 1 cut(s) 214
XmiI GTMKAC 1 cut(s) 388
XspI CTAG 1 cut(s) 234
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.