Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp06

Orthogroup ID

OG0016046

Physical Location & Seq

Genomic Coordinates Reverse (-)

3718291 .. 3719468

Gene Structure 1178 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.6G052800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 384 bp

ATGACGAAGAAACCGACATCAACAGCAACATGGGCACTTCACAAATTGCTTAGCATGTCACCTGCCATGGCTCCCAACCAAGACCAAGAACAAGATGGGATTCCCTTCTTGAGTGATAGGCACTTTGCCTTGCATGGGGAGGTCATGATGGTTGTTGTGGTTGTTCTCTTTGCTGCTTTCATTCTCTGCCTTGCTGTGCTTCCATGTCTCAAGCGAGCTAAGAGTCCTCAACTGCGATTGAATTCAGTTGATGAAGAAGACTCTGCTGTTGTTGCGAAGCCATTCAATTGTTTCTCACTGTGGTTGAAGAAAAAGAGGACAGATGATGTTGGTGCACAGGAAAATGGTGCAGCAGAGTTGCCATTGACGTCTTCTAGTTCATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

128

Amino Acids

13.88

Weight (kDa)

6.82

Isoelectric Point (pI)

51.52

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0016046)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G58570
fragaria_vesca	FvH4_3g39160
malus_domestica	MD11G1066400.v1.1
prunus_persica	Prupe.6G052800_v2.0.a1
pyrus_communis	pycom03g05050 pycom11g05620 pycom11g05630
rosa_chinensis	RchiOBHm_Chr5g0070601
rosa_laevigata	RLG00000036141
rosa_roxburghii	Rroxscaffold_1G00010640
rosa_rugosa	Rorug05G0407000
rosa_samantha	Rh5BG480500 Rh5CG504800 Rh5DG492700
rosa_wichuraiana	Rw5G043060

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	70
AatII	GACGTC	1 cut(s)	371
Acc36I	ACCTGC	1 cut(s)	70
AcsI	RAATTY	1 cut(s)	241
AcyI	GRCGYC	1 cut(s)	368
AfiI	CCNNNNNNNGG	1 cut(s)	135
AgsI	TTSAA	3 cut(s)	241, 286, 307
AluBI	AGCT	1 cut(s)	218
AluI	AGCT	1 cut(s)	218
Alw21I	GWGCWC	1 cut(s)	337
Alw26I	GTCTC	1 cut(s)	212
Alw44I	GTGCAC	1 cut(s)	333
ApaLI	GTGCAC	1 cut(s)	333
ApeKI	GCWGC	2 cut(s)	173, 350
ApoI	RAATTY	1 cut(s)	241
Asp700I	GAANNNNTTC	1 cut(s)	281
AsuHPI	GGTGA	1 cut(s)	51
BaeGI	GKGCMC	2 cut(s)	37, 337
BbsI	GAAGAC	2 cut(s)	264, 363
Bbv12I	GWGCWC	1 cut(s)	337
BbvI	GCAGC	2 cut(s)	160, 362
BccI	CCATC	2 cut(s)	89, 142
BcoDI	GTCTC	1 cut(s)	212
BfaI	CTAG	1 cut(s)	375
BfuAI	ACCTGC	1 cut(s)	70
BisI	GCNGC	2 cut(s)	174, 351
BlpI	GCTNAGC	1 cut(s)	50
BlsI	GCNGC	2 cut(s)	175, 352
BmiI	GGNNCC	1 cut(s)	72
BpiI	GAAGAC	2 cut(s)	264, 363
Bpu1102I	GCTNAGC	1 cut(s)	50
BpuEI	CTTGAG	2 cut(s)	130, 194
BsaHI	GRCGYC	1 cut(s)	368
BsaJI	CCNNGG	1 cut(s)	66
Bsc4I	CCNNNNNNNGG	1 cut(s)	135
BseDI	CCNNGG	1 cut(s)	66
BseLI	CCNNNNNNNGG	1 cut(s)	135
BseSI	GKGCMC	2 cut(s)	37, 337
BseXI	GCAGC	2 cut(s)	160, 362
BsgI	GTGCAG	1 cut(s)	369
BsiHKAI	GWGCWC	1 cut(s)	337
BslI	CCNNNNNNNGG	1 cut(s)	135
BsmAI	GTCTC	1 cut(s)	212
Bsp1286I	GDGCHC	2 cut(s)	37, 337
Bsp1720I	GCTNAGC	1 cut(s)	50
Bsp19I	CCATGG	1 cut(s)	66
BspHI	TCATGA	1 cut(s)	144
BspLI	GGNNCC	1 cut(s)	72
BspMI	ACCTGC	1 cut(s)	70
BssECI	CCNNGG	1 cut(s)	66
BssNI	GRCGYC	1 cut(s)	368
BssT1I	CCWWGG	1 cut(s)	66
Bst4CI	ACNGT	1 cut(s)	300
BstACI	GRCGYC	1 cut(s)	368
BstC8I	GCNNGC	1 cut(s)	216
BstDEI	CTNAG	2 cut(s)	50, 219
BstDSI	CCRYGG	1 cut(s)	66
BstMAI	GTCTC	1 cut(s)	212
BstMWI	GCNNNNNNNGC	2 cut(s)	32, 272
BstNSI	RCATGY	1 cut(s)	58
BstSLI	GKGCMC	2 cut(s)	37, 337
BstV1I	GCAGC	2 cut(s)	160, 362
BstV2I	GAAGAC	2 cut(s)	264, 363
BtgI	CCRYGG	1 cut(s)	66
BtsIMutI	CAGTG	1 cut(s)	296
BveI	ACCTGC	1 cut(s)	70
Cac8I	GCNNGC	1 cut(s)	216
CciI	TCATGA	1 cut(s)	144
CviAII	CATG	6 cut(s)	30, 55, 67, 134, 145, 204
CviJI	RGCY	3 cut(s)	71, 218, 280
CviKI_1	RGCY	3 cut(s)	71, 218, 280
DdeI	CTNAG	2 cut(s)	50, 219
Eco130I	CCWWGG	1 cut(s)	66
EcoRI	GAATTC	1 cut(s)	241
EcoT14I	CCWWGG	1 cut(s)	66
ErhI	CCWWGG	1 cut(s)	66
FaeI	CATG	6 cut(s)	33, 58, 70, 137, 148, 207
FaiI	YATR	7 cut(s)	31, 56, 68, 135, 146, 205, 382
FatI	CATG	6 cut(s)	29, 54, 66, 133, 144, 203
Fnu4HI	GCNGC	2 cut(s)	174, 351
Fsp4HI	GCNGC	2 cut(s)	174, 351
FspBI	CTAG	1 cut(s)	375
GluI	GCNGC	2 cut(s)	174, 351
Hin1I	GRCGYC	1 cut(s)	368
Hin1II	CATG	6 cut(s)	33, 58, 70, 137, 148, 207
HinfI	GANTC	3 cut(s)	100, 223, 260
HphI	GGTGA	1 cut(s)	51
Hpy166II	GTNNAC	1 cut(s)	335
Hpy188III	TCNNGA	2 cut(s)	109, 145
Hpy8I	GTNNAC	1 cut(s)	335
HpyAV	CCTTC	1 cut(s)	115
HpyCH4III	ACNGT	1 cut(s)	300
HpyCH4IV	ACGT	1 cut(s)	368
HpyCH4V	TGCA	3 cut(s)	133, 335, 350
HpyF10VI	GCNNNNNNNGC	2 cut(s)	32, 272
HpyF3I	CTNAG	2 cut(s)	50, 219
HpySE526I	ACGT	1 cut(s)	368
Hsp92I	GRCGYC	1 cut(s)	368
Hsp92II	CATG	6 cut(s)	33, 58, 70, 137, 148, 207
LmnI	GCTCC	1 cut(s)	76
LpnPI	CCDG	2 cut(s)	75, 323
Lsp1109I	GCAGC	2 cut(s)	160, 362
MaeI	CTAG	1 cut(s)	375
MaeII	ACGT	1 cut(s)	368
MaeIII	GTNAC	1 cut(s)	57
MboII	GAAGA	5 cut(s)	19, 266, 269, 319, 363
MfeI	CAATTG	1 cut(s)	286
MhlI	GDGCHC	2 cut(s)	37, 337
MluCI	AATT	3 cut(s)	44, 241, 286
MlyI	GAGTC	2 cut(s)	232, 254
MnlI	CCTC	3 cut(s)	133, 237, 309
MroXI	GAANNNNTTC	1 cut(s)	281
MunI	CAATTG	1 cut(s)	286
MwoI	GCNNNNNNNGC	2 cut(s)	32, 272
NcoI	CCATGG	1 cut(s)	66
NlaIII	CATG	6 cut(s)	33, 58, 70, 137, 148, 207
NlaIV	GGNNCC	1 cut(s)	72
NmuCI	GTSAC	1 cut(s)	57
NspI	RCATGY	1 cut(s)	58
PagI	TCATGA	1 cut(s)	144
PaqCI	CACCTGC	1 cut(s)	70
PcsI	WCGNNNNNNNCGW	1 cut(s)	11
PdmI	GAANNNNTTC	1 cut(s)	281
PfeI	GAWTC	1 cut(s)	100
PkrI	GCNGC	2 cut(s)	175, 352
PleI	GAGTC	2 cut(s)	231, 254
PpsI	GAGTC	2 cut(s)	231, 254
PspN4I	GGNNCC	1 cut(s)	72
SatI	GCNGC	2 cut(s)	174, 351
SchI	GAGTC	2 cut(s)	232, 254
SduI	GDGCHC	2 cut(s)	37, 337
SetI	ASST	4 cut(s)	64, 144, 220, 371
SmlI	CTYRAG	2 cut(s)	109, 209
SmoI	CTYRAG	2 cut(s)	109, 209
Sse9I	AATT	3 cut(s)	44, 241, 286
SspMI	CTAG	1 cut(s)	375
StyI	CCWWGG	1 cut(s)	66
TaaI	ACNGT	1 cut(s)	300
TaiI	ACGT	1 cut(s)	371
TasI	AATT	3 cut(s)	44, 241, 286
TfiI	GAWTC	1 cut(s)	100
TscAI	CASTG	1 cut(s)	303
TseFI	GTSAC	1 cut(s)	57
TseI	GCWGC	2 cut(s)	173, 350
Tsp45I	GTSAC	1 cut(s)	57
TspDTI	ATGAA	3 cut(s)	169, 267, 369
TspRI	CASTG	1 cut(s)	303
VneI	GTGCAC	1 cut(s)	333
XapI	RAATTY	1 cut(s)	241
XceI	RCATGY	1 cut(s)	58
XcmI	CCANNNNNNNNNTGG	1 cut(s)	92
XmnI	GAANNNNTTC	1 cut(s)	281
XspI	CTAG	1 cut(s)	375
ZraI	GACGTC	1 cut(s)	369

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.