pycom03g05050

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr3
OG0016046
Physical Location & Seq
Reverse (-)
3936012 .. 3936383
372 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom03g05050.1

Sequence Viewer

Length: 372 bp
ATGAGGATGGTGACAGAAGCAGCAGCTTGGGCACCTTCCATGGCTCCTACGCCTTCTTCCCCACAAGACCAAGACGGGATTCGCACCTTGCTTGACAGGCACTACGCCTTGCATGGAGAGGTCATGATGGTGGTTGTGATTCTTCTGTTTGCTGCCTTCATTTTCTGCCTTCTCGTGATTTCCCGTCTCCGGCGAGCGAAGAATTGTCATCCGCGATCTTCGCTCGATGAAGACTCCAACGTCGTTCGGAAGCCGTGTAGTTGTTTTTCATCATGGTTTATGAAAAGGAGGGCAGATGAACATGGTGCAAGCTCAACAGAGTTGCCATTGAGGAGGTGTAGTAGTGAAGTTATAAGAAACCCTAGTTCATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

124

Amino Acids

13.85

Weight (kDa)

9.04

Isoelectric Point (pI)

76.3

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0016046)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G58570
fragaria_vesca FvH4_3g39160
malus_domestica MD11G1066400.v1.1
prunus_persica Prupe.6G052800_v2.0.a1
pyrus_communis pycom03g05050 pycom11g05620 pycom11g05630
rosa_chinensis RchiOBHm_Chr5g0070601
rosa_laevigata RLG00000036141
rosa_roxburghii Rroxscaffold_1G00010640
rosa_rugosa Rorug05G0407000
rosa_samantha Rh5BG480500 Rh5CG504800 Rh5DG492700
rosa_wichuraiana Rw5G043060

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 353
AasI GACNNNNNNGTC 1 cut(s) 239
AccB1I GGYRCC 1 cut(s) 31
AccII CGCG 1 cut(s) 214
AciI CCGC 1 cut(s) 212
AfiI CCNNNNNNNGG 1 cut(s) 189
AjuI GAANNNNNNNTTGG 2 cut(s) 63, 95
AluBI AGCT 2 cut(s) 26, 312
AluI AGCT 2 cut(s) 26, 312
Alw26I GTCTC 1 cut(s) 191
ApeKI GCWGC 3 cut(s) 20, 23, 152
AsuHPI GGTGA 1 cut(s) 22
BaeGI GKGCMC 1 cut(s) 34
BanI GGYRCC 1 cut(s) 31
BauI CACGAG 1 cut(s) 173
BbsI GAAGAC 1 cut(s) 237
BbvI GCAGC 3 cut(s) 32, 35, 139
BccI CCATC 1 cut(s) 121
BceAI ACGGC 1 cut(s) 238
BcoDI GTCTC 1 cut(s) 191
BfaI CTAG 1 cut(s) 363
BisI GCNGC 3 cut(s) 21, 24, 153
BlsI GCNGC 3 cut(s) 22, 25, 154
BmiI GGNNCC 2 cut(s) 33, 45
BpiI GAAGAC 1 cut(s) 237
BsaJI CCNNGG 1 cut(s) 39
BsaXI ACNNNNNCTCC 2 cut(s) 325, 355
Bsc4I CCNNNNNNNGG 1 cut(s) 189
BseDI CCNNGG 1 cut(s) 39
BseGI GGATG 2 cut(s) 12, 208
BseLI CCNNNNNNNGG 1 cut(s) 189
BseRI GAGGAG 1 cut(s) 346
BseSI GKGCMC 1 cut(s) 34
BseXI GCAGC 3 cut(s) 32, 35, 139
Bsh1236I CGCG 1 cut(s) 214
BshNI GGYRCC 1 cut(s) 31
BsiSI CCGG 1 cut(s) 190
BslI CCNNNNNNNGG 1 cut(s) 189
BsmAI GTCTC 1 cut(s) 191
BsmBI CGTCTC 1 cut(s) 191
Bsp1286I GDGCHC 1 cut(s) 34
Bsp143I GATC 1 cut(s) 215
Bsp19I CCATGG 1 cut(s) 39
BspACI CCGC 1 cut(s) 212
BspFNI CGCG 1 cut(s) 214
BspHI TCATGA 1 cut(s) 123
BspLI GGNNCC 2 cut(s) 33, 45
BspT107I GGYRCC 1 cut(s) 31
BssECI CCNNGG 1 cut(s) 39
BssMI GATC 1 cut(s) 215
BssSI CACGAG 1 cut(s) 173
BssT1I CCWWGG 1 cut(s) 39
Bst2BI CACGAG 1 cut(s) 173
BstC8I GCNNGC 2 cut(s) 195, 310
BstDSI CCRYGG 1 cut(s) 39
BstF5I GGATG 2 cut(s) 12, 208
BstFNI CGCG 1 cut(s) 214
BstKTI GATC 1 cut(s) 218
BstMAI GTCTC 1 cut(s) 191
BstMBI GATC 1 cut(s) 215
BstMWI GCNNNNNNNGC 3 cut(s) 29, 97, 220
BstSLI GKGCMC 1 cut(s) 34
BstUI CGCG 1 cut(s) 214
BstV1I GCAGC 3 cut(s) 32, 35, 139
BstV2I GAAGAC 1 cut(s) 237
BtgI CCRYGG 1 cut(s) 39
BtsCI GGATG 2 cut(s) 12, 208
Cac8I GCNNGC 2 cut(s) 195, 310
CciI TCATGA 1 cut(s) 123
CviAII CATG 5 cut(s) 40, 113, 124, 273, 302
CviJI RGCY 4 cut(s) 26, 44, 253, 312
CviKI_1 RGCY 4 cut(s) 26, 44, 253, 312
DpnI GATC 1 cut(s) 217
DpnII GATC 1 cut(s) 215
DrdI GACNNNNNNGTC 1 cut(s) 239
DseDI GACNNNNNNGTC 1 cut(s) 239
Eco130I CCWWGG 1 cut(s) 39
EcoT14I CCWWGG 1 cut(s) 39
ErhI CCWWGG 1 cut(s) 39
Esp3I CGTCTC 1 cut(s) 191
FaeI CATG 5 cut(s) 43, 116, 127, 276, 305
FaiI YATR 8 cut(s) 41, 114, 125, 274, 281, 303, 353, 370
FatI CATG 5 cut(s) 39, 112, 123, 272, 301
Fnu4HI GCNGC 3 cut(s) 21, 24, 153
FokI GGATG 2 cut(s) 19, 195
Fsp4HI GCNGC 3 cut(s) 21, 24, 153
FspBI CTAG 1 cut(s) 363
GluI GCNGC 3 cut(s) 21, 24, 153
HapII CCGG 1 cut(s) 190
Hin1II CATG 5 cut(s) 43, 116, 127, 276, 305
HinfI GANTC 3 cut(s) 79, 139, 233
HpaII CCGG 1 cut(s) 190
HphI GGTGA 1 cut(s) 22
Hpy188I TCNGA 1 cut(s) 249
Hpy188III TCNNGA 2 cut(s) 124, 175
Hpy99I CGWCG 1 cut(s) 245
HpyAV CCTTC 4 cut(s) 45, 63, 166, 179
HpyCH4IV ACGT 1 cut(s) 240
HpyCH4V TGCA 2 cut(s) 112, 308
HpyF10VI GCNNNNNNNGC 3 cut(s) 29, 97, 220
HpySE526I ACGT 1 cut(s) 240
Hsp92II CATG 5 cut(s) 43, 116, 127, 276, 305
Kzo9I GATC 1 cut(s) 215
LmnI GCTCC 1 cut(s) 49
LpnPI CCDG 2 cut(s) 82, 203
Lsp1109I GCAGC 3 cut(s) 32, 35, 139
MaeI CTAG 1 cut(s) 363
MaeII ACGT 1 cut(s) 240
MaeIII GTNAC 1 cut(s) 10
MalI GATC 1 cut(s) 217
MboI GATC 1 cut(s) 215
MboII GAAGA 5 cut(s) 48, 134, 210, 211, 242
MhlI GDGCHC 1 cut(s) 34
MluCI AATT 1 cut(s) 202
MlyI GAGTC 1 cut(s) 227
MmeI TCCRAC 1 cut(s) 261
MnlI CCTC 4 cut(s) 112, 282, 324, 327
MslI CAYNNNNRTG 1 cut(s) 128
MspI CCGG 1 cut(s) 190
MvnI CGCG 1 cut(s) 214
MwoI GCNNNNNNNGC 3 cut(s) 29, 97, 220
NcoI CCATGG 1 cut(s) 39
NdeII GATC 1 cut(s) 215
NlaIII CATG 5 cut(s) 43, 116, 127, 276, 305
NlaIV GGNNCC 2 cut(s) 33, 45
NmuCI GTSAC 1 cut(s) 10
PagI TCATGA 1 cut(s) 123
PfeI GAWTC 2 cut(s) 79, 139
PkrI GCNGC 3 cut(s) 22, 25, 154
PleI GAGTC 1 cut(s) 227
PpsI GAGTC 1 cut(s) 227
PsiI TTATAA 1 cut(s) 353
PspN4I GGNNCC 2 cut(s) 33, 45
RseI CAYNNNNRTG 1 cut(s) 128
SatI GCNGC 3 cut(s) 21, 24, 153
Sau3AI GATC 1 cut(s) 215
SchI GAGTC 1 cut(s) 227
SduI GDGCHC 1 cut(s) 34
SetI ASST 7 cut(s) 28, 37, 89, 123, 243, 314, 338
SmiMI CAYNNNNRTG 1 cut(s) 128
Sse9I AATT 1 cut(s) 202
SsiI CCGC 1 cut(s) 212
SspMI CTAG 1 cut(s) 363
StyI CCWWGG 1 cut(s) 39
TaiI ACGT 1 cut(s) 243
TaqI TCGA 1 cut(s) 225
TasI AATT 1 cut(s) 202
TfiI GAWTC 2 cut(s) 79, 139
TseFI GTSAC 1 cut(s) 10
TseI GCWGC 3 cut(s) 20, 23, 152
Tsp45I GTSAC 1 cut(s) 10
TspDTI ATGAA 6 cut(s) 148, 243, 258, 296, 312, 357
XspI CTAG 1 cut(s) 363
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.