Rh5DG492700

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5D
OG0016046
Physical Location & Seq
Forward (+)
77390787 .. 77391110
324 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh5DG492700.1

Sequence Viewer

Length: 324 bp
ATGTCATCAGCACCTGCCATGGCTCCTAATAATCAAGATGAGATTCTGTTCTTGGATGATAAGCACTATGCTTTGCATGGAGAGATCATGTTGGTGGTGCTTATTGTTCTCTTCATCGCTTTCGTCTCCTGCCTTGCCGTGGTCACTCGTATCCGGCGAGCTAGGGCAGTCGAGGAGGACTTGGTTTCGAAGAACCTGTGCAACTGTTTTGGACTATGCAGTTTGGTGAGGAAGAAGAGGAACAGAGGAGATGAGGATGCTGCACCAGAAGCTCCACTGAGGGCCAGTAATGAGATACCAGAAAGTCTACCTCATGAGAAGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

107

Amino Acids

11.9

Weight (kDa)

5.88

Isoelectric Point (pI)

64.89

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0016046)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G58570
fragaria_vesca FvH4_3g39160
malus_domestica MD11G1066400.v1.1
prunus_persica Prupe.6G052800_v2.0.a1
pyrus_communis pycom03g05050 pycom11g05620 pycom11g05630
rosa_chinensis RchiOBHm_Chr5g0070601
rosa_laevigata RLG00000036141
rosa_roxburghii Rroxscaffold_1G00010640
rosa_rugosa Rorug05G0407000
rosa_samantha Rh5BG480500 Rh5CG504800 Rh5DG492700
rosa_wichuraiana Rw5G043060

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 22
Acc36I ACCTGC 1 cut(s) 22
AccI GTMKAC 1 cut(s) 307
AfiI CCNNNNNNNGG 1 cut(s) 139
AluBI AGCT 2 cut(s) 161, 272
AluI AGCT 2 cut(s) 161, 272
Alw26I GTCTC 1 cut(s) 130
AlwNI CAGNNNCTG 1 cut(s) 14
AoxI GGCC 1 cut(s) 282
ApeKI GCWGC 1 cut(s) 260
AspS9I GGNCC 1 cut(s) 282
AsuHPI GGTGA 1 cut(s) 238
AsuII TTCGAA 1 cut(s) 188
BbvI GCAGC 1 cut(s) 247
BceAI ACGGC 1 cut(s) 122
BciVI GTATCC 1 cut(s) 161
BcoDI GTCTC 1 cut(s) 130
BfaI CTAG 1 cut(s) 162
BfuAI ACCTGC 1 cut(s) 22
BfuI GTATCC 1 cut(s) 161
BisI GCNGC 1 cut(s) 261
BlsI GCNGC 1 cut(s) 262
BmgT120I GGNCC 1 cut(s) 282
BmiI GGNNCC 1 cut(s) 24
BmsI GCATC 1 cut(s) 247
Bpu14I TTCGAA 1 cut(s) 188
BsaJI CCNNGG 2 cut(s) 18, 138
Bsc4I CCNNNNNNNGG 1 cut(s) 139
Bse1I ACTGG 1 cut(s) 285
BseDI CCNNGG 2 cut(s) 18, 138
BseGI GGATG 2 cut(s) 61, 262
BseLI CCNNNNNNNGG 1 cut(s) 139
BseMII CTCAG 1 cut(s) 269
BseNI ACTGG 1 cut(s) 285
BseRI GAGGAG 2 cut(s) 188, 261
BseXI GCAGC 1 cut(s) 247
BsgI GTGCAG 1 cut(s) 246
BshFI GGCC 1 cut(s) 284
BsiSI CCGG 1 cut(s) 154
BslI CCNNNNNNNGG 1 cut(s) 139
BsmAI GTCTC 1 cut(s) 130
BsmBI CGTCTC 1 cut(s) 130
BsnI GGCC 1 cut(s) 284
Bsp119I TTCGAA 1 cut(s) 188
Bsp143I GATC 1 cut(s) 84
Bsp19I CCATGG 1 cut(s) 18
BspANI GGCC 1 cut(s) 284
BspCNI CTCAG 1 cut(s) 270
BspHI TCATGA 1 cut(s) 313
BspLI GGNNCC 1 cut(s) 24
BspMI ACCTGC 1 cut(s) 22
BspT104I TTCGAA 1 cut(s) 188
BsrI ACTGG 1 cut(s) 285
BssECI CCNNGG 2 cut(s) 18, 138
BssMI GATC 1 cut(s) 84
BssT1I CCWWGG 1 cut(s) 18
Bst4CI ACNGT 1 cut(s) 206
Bst6I CTCTTC 2 cut(s) 116, 230
BstBI TTCGAA 1 cut(s) 188
BstC8I GCNNGC 1 cut(s) 159
BstDEI CTNAG 1 cut(s) 278
BstDSI CCRYGG 2 cut(s) 18, 138
BstF5I GGATG 2 cut(s) 61, 262
BstKTI GATC 1 cut(s) 87
BstMAI GTCTC 1 cut(s) 130
BstMBI GATC 1 cut(s) 84
BstMWI GCNNNNNNNGC 1 cut(s) 269
BstV1I GCAGC 1 cut(s) 247
BsuI GTATCC 1 cut(s) 161
BsuRI GGCC 1 cut(s) 284
BtgI CCRYGG 2 cut(s) 18, 138
BtgZI GCGATG 1 cut(s) 100
BtsCI GGATG 2 cut(s) 61, 262
BtsIMutI CAGTG 1 cut(s) 275
BveI ACCTGC 1 cut(s) 22
Cac8I GCNNGC 1 cut(s) 159
CaiI CAGNNNCTG 1 cut(s) 14
CciI TCATGA 1 cut(s) 313
Cfr13I GGNCC 1 cut(s) 282
CviAII CATG 4 cut(s) 19, 77, 88, 314
CviJI RGCY 4 cut(s) 23, 161, 272, 284
CviKI_1 RGCY 4 cut(s) 23, 161, 272, 284
DdeI CTNAG 1 cut(s) 278
DpnI GATC 1 cut(s) 86
DpnII GATC 1 cut(s) 84
Eam1104I CTCTTC 2 cut(s) 116, 230
EarI CTCTTC 2 cut(s) 116, 230
Eco130I CCWWGG 1 cut(s) 18
EcoT14I CCWWGG 1 cut(s) 18
ErhI CCWWGG 1 cut(s) 18
Esp3I CGTCTC 1 cut(s) 130
FaeI CATG 4 cut(s) 22, 80, 91, 317
FaiI YATR 6 cut(s) 20, 69, 78, 89, 217, 315
FatI CATG 4 cut(s) 18, 76, 87, 313
FblI GTMKAC 1 cut(s) 307
Fnu4HI GCNGC 1 cut(s) 261
FokI GGATG 2 cut(s) 68, 269
Fsp4HI GCNGC 1 cut(s) 261
FspBI CTAG 1 cut(s) 162
GluI GCNGC 1 cut(s) 261
HaeIII GGCC 1 cut(s) 284
HapII CCGG 1 cut(s) 154
Hin1II CATG 4 cut(s) 22, 80, 91, 317
HinfI GANTC 1 cut(s) 43
HpaII CCGG 1 cut(s) 154
HphI GGTGA 1 cut(s) 238
Hpy166II GTNNAC 1 cut(s) 308
Hpy188III TCNNGA 2 cut(s) 35, 314
Hpy8I GTNNAC 1 cut(s) 308
HpyCH4III ACNGT 1 cut(s) 206
HpyCH4V TGCA 4 cut(s) 76, 201, 219, 263
HpyF10VI GCNNNNNNNGC 1 cut(s) 269
HpyF3I CTNAG 1 cut(s) 278
Hsp92II CATG 4 cut(s) 22, 80, 91, 317
Kzo9I GATC 1 cut(s) 84
LmnI GCTCC 2 cut(s) 28, 277
LpnPI CCDG 7 cut(s) 27, 142, 167, 209, 279, 298, 312
Lsp1109I GCAGC 1 cut(s) 247
LweI GCATC 1 cut(s) 247
MaeI CTAG 1 cut(s) 162
MaeIII GTNAC 1 cut(s) 142
MalI GATC 1 cut(s) 86
MboI GATC 1 cut(s) 84
MboII GAAGA 4 cut(s) 103, 202, 244, 247
MnlI CCTC 8 cut(s) 166, 169, 222, 231, 239, 247, 273, 321
MslI CAYNNNNRTG 1 cut(s) 92
MspI CCGG 1 cut(s) 154
MwoI GCNNNNNNNGC 1 cut(s) 269
NcoI CCATGG 1 cut(s) 18
NdeII GATC 1 cut(s) 84
NlaIII CATG 4 cut(s) 22, 80, 91, 317
NlaIV GGNNCC 1 cut(s) 24
NmuCI GTSAC 1 cut(s) 142
NspV TTCGAA 1 cut(s) 188
PagI TCATGA 1 cut(s) 313
PaqCI CACCTGC 1 cut(s) 22
PcsI WCGNNNNNNNCGW 1 cut(s) 154
PfeI GAWTC 1 cut(s) 43
PkrI GCNGC 1 cut(s) 262
PspN4I GGNNCC 1 cut(s) 24
PspPI GGNCC 1 cut(s) 282
PstNI CAGNNNCTG 1 cut(s) 14
RseI CAYNNNNRTG 1 cut(s) 92
SatI GCNGC 1 cut(s) 261
Sau3AI GATC 1 cut(s) 84
Sau96I GGNCC 1 cut(s) 282
SetI ASST 5 cut(s) 16, 163, 198, 274, 313
SfaNI GCATC 1 cut(s) 247
SfuI TTCGAA 1 cut(s) 188
SmiMI CAYNNNNRTG 1 cut(s) 92
SspMI CTAG 1 cut(s) 162
StyI CCWWGG 1 cut(s) 18
TaaI ACNGT 1 cut(s) 206
TaqI TCGA 2 cut(s) 171, 188
TfiI GAWTC 1 cut(s) 43
TscAI CASTG 1 cut(s) 282
TseFI GTSAC 1 cut(s) 142
TseI GCWGC 1 cut(s) 260
Tsp45I GTSAC 1 cut(s) 142
TspDTI ATGAA 1 cut(s) 103
TspRI CASTG 1 cut(s) 282
XmiI GTMKAC 1 cut(s) 307
XspI CTAG 1 cut(s) 162
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.