RLG00000036141

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr7
OG0016046
Physical Location & Seq
Forward (+)
76341642 .. 76342200
559 bp
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UTR
Exon/CDS
Intron
RLM00000036141

Sequence Viewer

Length: 417 bp
ATGTCATCCTCCATTTATGCTAATGAGACACCGCCCTCAGAATCTCTTAACCCTCCAGCATCAGCAGCACCTCATCACAAATTTCCAGCCATGTCATCAGCACCTGCCATGGCTCCCAATAATCAAGATGAGATTCTGTTCTTGGATGATAAGCACTATGCTTTGCATGGAGAGATCATGTTGGTGGTGCTTATTGTTCTCTTCATCGCTTTCGTCTCCTGCCTTGCCGTGGTCACTCGTGTCCGGCGAGCTAGGGCAGTCGAGGAGGACTTGGTTTCGAAGAACCTGTGCAACTGTTTTGGATTGCTATGCAGTTTGGTGAGGAAGAAGAGGAACAGAGGAGATGAGGATACTGCACCAGAAGATCCACTGAGGGCTAGTAATGAGATACCAGAAAGTCTACCTCATGAGAAGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

139

Amino Acids

15.19

Weight (kDa)

5.69

Isoelectric Point (pI)

73.23

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0016046)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G58570
fragaria_vesca FvH4_3g39160
malus_domestica MD11G1066400.v1.1
prunus_persica Prupe.6G052800_v2.0.a1
pyrus_communis pycom03g05050 pycom11g05620 pycom11g05630
rosa_chinensis RchiOBHm_Chr5g0070601
rosa_laevigata RLG00000036141
rosa_roxburghii Rroxscaffold_1G00010640
rosa_rugosa Rorug05G0407000
rosa_samantha Rh5BG480500 Rh5CG504800 Rh5DG492700
rosa_wichuraiana Rw5G043060

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 112
Acc36I ACCTGC 1 cut(s) 112
AccI GTMKAC 1 cut(s) 400
AciI CCGC 1 cut(s) 32
AclWI GGATC 1 cut(s) 359
AcsI RAATTY 1 cut(s) 80
AfiI CCNNNNNNNGG 1 cut(s) 229
AluBI AGCT 1 cut(s) 251
AluI AGCT 1 cut(s) 251
Alw26I GTCTC 2 cut(s) 20, 220
AlwI GGATC 1 cut(s) 359
AlwNI CAGNNNCTG 1 cut(s) 104
ApeKI GCWGC 1 cut(s) 65
ApoI RAATTY 1 cut(s) 80
AsuHPI GGTGA 1 cut(s) 331
AsuII TTCGAA 1 cut(s) 278
BauI CACGAG 1 cut(s) 237
BbvI GCAGC 1 cut(s) 77
BceAI ACGGC 1 cut(s) 212
BciVI GTATCC 1 cut(s) 343
BcoDI GTCTC 2 cut(s) 20, 220
BfaI CTAG 2 cut(s) 252, 378
BfuAI ACCTGC 1 cut(s) 112
BfuI GTATCC 1 cut(s) 343
BisI GCNGC 1 cut(s) 66
BlsI GCNGC 1 cut(s) 67
BmiI GGNNCC 1 cut(s) 114
BmsI GCATC 1 cut(s) 68
BpmI CTGGAG 1 cut(s) 39
Bpu14I TTCGAA 1 cut(s) 278
BsaJI CCNNGG 2 cut(s) 108, 228
Bsc4I CCNNNNNNNGG 1 cut(s) 229
BseDI CCNNGG 2 cut(s) 108, 228
BseGI GGATG 2 cut(s) 5, 151
BseLI CCNNNNNNNGG 1 cut(s) 229
BseMII CTCAG 2 cut(s) 51, 362
BseRI GAGGAG 2 cut(s) 278, 354
BseXI GCAGC 1 cut(s) 77
BsgI GTGCAG 1 cut(s) 339
BsiSI CCGG 1 cut(s) 244
BslI CCNNNNNNNGG 1 cut(s) 229
BsmAI GTCTC 2 cut(s) 20, 220
BsmBI CGTCTC 1 cut(s) 220
Bsp119I TTCGAA 1 cut(s) 278
Bsp143I GATC 2 cut(s) 174, 364
Bsp19I CCATGG 1 cut(s) 108
BspACI CCGC 1 cut(s) 32
BspCNI CTCAG 2 cut(s) 50, 363
BspHI TCATGA 1 cut(s) 406
BspLI GGNNCC 1 cut(s) 114
BspMI ACCTGC 1 cut(s) 112
BspPI GGATC 1 cut(s) 359
BspT104I TTCGAA 1 cut(s) 278
BssECI CCNNGG 2 cut(s) 108, 228
BssMI GATC 2 cut(s) 174, 364
BssSI CACGAG 1 cut(s) 237
BssT1I CCWWGG 1 cut(s) 108
Bst2BI CACGAG 1 cut(s) 237
Bst4CI ACNGT 1 cut(s) 296
Bst6I CTCTTC 2 cut(s) 206, 323
BstBI TTCGAA 1 cut(s) 278
BstC8I GCNNGC 1 cut(s) 249
BstDEI CTNAG 2 cut(s) 37, 371
BstDSI CCRYGG 2 cut(s) 108, 228
BstF5I GGATG 2 cut(s) 5, 151
BstKTI GATC 2 cut(s) 177, 367
BstMAI GTCTC 2 cut(s) 20, 220
BstMBI GATC 2 cut(s) 174, 364
BstMWI GCNNNNNNNGC 1 cut(s) 65
BstV1I GCAGC 1 cut(s) 77
BstX2I RGATCY 1 cut(s) 364
BstYI RGATCY 1 cut(s) 364
BsuI GTATCC 1 cut(s) 343
BtgI CCRYGG 2 cut(s) 108, 228
BtgZI GCGATG 1 cut(s) 190
BtsCI GGATG 2 cut(s) 5, 151
BtsIMutI CAGTG 1 cut(s) 368
BveI ACCTGC 1 cut(s) 112
Cac8I GCNNGC 1 cut(s) 249
CaiI CAGNNNCTG 1 cut(s) 104
CciI TCATGA 1 cut(s) 406
CviAII CATG 5 cut(s) 91, 109, 167, 178, 407
CviJI RGCY 4 cut(s) 89, 113, 251, 377
CviKI_1 RGCY 4 cut(s) 89, 113, 251, 377
DdeI CTNAG 2 cut(s) 37, 371
DpnI GATC 2 cut(s) 176, 366
DpnII GATC 2 cut(s) 174, 364
Eam1104I CTCTTC 2 cut(s) 206, 323
EarI CTCTTC 2 cut(s) 206, 323
Eco130I CCWWGG 1 cut(s) 108
EcoT14I CCWWGG 1 cut(s) 108
ErhI CCWWGG 1 cut(s) 108
Esp3I CGTCTC 1 cut(s) 220
FaeI CATG 5 cut(s) 94, 112, 170, 181, 410
FaiI YATR 8 cut(s) 18, 92, 110, 159, 168, 179, 310, 408
FatI CATG 5 cut(s) 90, 108, 166, 177, 406
FblI GTMKAC 1 cut(s) 400
Fnu4HI GCNGC 1 cut(s) 66
FokI GGATG 1 cut(s) 158
Fsp4HI GCNGC 1 cut(s) 66
FspBI CTAG 2 cut(s) 252, 378
GluI GCNGC 1 cut(s) 66
GsuI CTGGAG 1 cut(s) 39
HapII CCGG 1 cut(s) 244
Hin1II CATG 5 cut(s) 94, 112, 170, 181, 410
HinfI GANTC 2 cut(s) 41, 133
HpaII CCGG 1 cut(s) 244
HphI GGTGA 1 cut(s) 331
Hpy166II GTNNAC 1 cut(s) 401
Hpy188I TCNGA 1 cut(s) 40
Hpy188III TCNNGA 2 cut(s) 125, 407
Hpy8I GTNNAC 1 cut(s) 401
HpyCH4III ACNGT 1 cut(s) 296
HpyCH4V TGCA 4 cut(s) 166, 291, 312, 356
HpyF10VI GCNNNNNNNGC 1 cut(s) 65
HpyF3I CTNAG 2 cut(s) 37, 371
Hsp92II CATG 5 cut(s) 94, 112, 170, 181, 410
Kzo9I GATC 2 cut(s) 174, 364
LmnI GCTCC 1 cut(s) 118
LpnPI CCDG 8 cut(s) 69, 99, 117, 232, 257, 299, 372, 405
Lsp1109I GCAGC 1 cut(s) 77
LweI GCATC 1 cut(s) 68
MaeI CTAG 2 cut(s) 252, 378
MaeIII GTNAC 1 cut(s) 232
MalI GATC 2 cut(s) 176, 366
MboI GATC 2 cut(s) 174, 364
MboII GAAGA 5 cut(s) 193, 292, 337, 340, 374
MflI RGATCY 1 cut(s) 364
MluCI AATT 1 cut(s) 80
MseI TTAA 1 cut(s) 48
MslI CAYNNNNRTG 1 cut(s) 182
MspI CCGG 1 cut(s) 244
MwoI GCNNNNNNNGC 1 cut(s) 65
NcoI CCATGG 1 cut(s) 108
NdeII GATC 2 cut(s) 174, 364
NlaIII CATG 5 cut(s) 94, 112, 170, 181, 410
NlaIV GGNNCC 1 cut(s) 114
NmuCI GTSAC 1 cut(s) 232
NspV TTCGAA 1 cut(s) 278
PagI TCATGA 1 cut(s) 406
PaqCI CACCTGC 1 cut(s) 112
PcsI WCGNNNNNNNCGW 1 cut(s) 244
PfeI GAWTC 2 cut(s) 41, 133
PkrI GCNGC 1 cut(s) 67
PspN4I GGNNCC 1 cut(s) 114
PstNI CAGNNNCTG 1 cut(s) 104
PsuI RGATCY 1 cut(s) 364
RseI CAYNNNNRTG 1 cut(s) 182
SaqAI TTAA 1 cut(s) 48
SatI GCNGC 1 cut(s) 66
Sau3AI GATC 2 cut(s) 174, 364
SetI ASST 5 cut(s) 73, 106, 253, 288, 406
SfaNI GCATC 1 cut(s) 68
SfuI TTCGAA 1 cut(s) 278
SmiMI CAYNNNNRTG 1 cut(s) 182
Sse9I AATT 1 cut(s) 80
SsiI CCGC 1 cut(s) 32
SspMI CTAG 2 cut(s) 252, 378
StyI CCWWGG 1 cut(s) 108
TaaI ACNGT 1 cut(s) 296
TaqI TCGA 2 cut(s) 261, 278
TasI AATT 1 cut(s) 80
TfiI GAWTC 2 cut(s) 41, 133
Tru1I TTAA 1 cut(s) 48
Tru9I TTAA 1 cut(s) 48
TscAI CASTG 1 cut(s) 375
TseFI GTSAC 1 cut(s) 232
TseI GCWGC 1 cut(s) 65
Tsp45I GTSAC 1 cut(s) 232
TspDTI ATGAA 1 cut(s) 193
TspRI CASTG 1 cut(s) 375
XapI RAATTY 1 cut(s) 80
XmiI GTMKAC 1 cut(s) 400
XspI CTAG 2 cut(s) 252, 378
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.