Rroxscaffold_1G00010640

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000001
OG0016046
Physical Location & Seq
Reverse (-)
13500106 .. 13500492
387 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_1G00010640.1

Sequence Viewer

Length: 387 bp
ATGATATTAGCTCTAACGGCAACATGGGCAGCAGCAGCAGCACCCCATCACAAATTTCCAGCCATGTCATCAGCACCTGCCATGGCTCCTAATAATCAAGATGGGATTCTGTTGTTGGATGATAAGCACTATGCTTTGCATGGAGAGATCATGTTGGTGGTGCTTATTGTTCTCTTCATCGCTTTCGTCTCCTGCCTTGCCGTGCTCACTCGTATCCGGCGAGCTAGGGCAGTCGAGGAGGATTTGGTTTCGAAGAACCTGTGCAACTGTTTTGGACTATGCAGTTTGGTGAGGAAGAAGAGGAACAGAGGAGATGAGGGTGCTGTACCAGAAGCTCCACTGAGGGCCAGTAATGAGATACCAGAAAGTCTACCTCATGAGAAGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

128

Amino Acids

13.95

Weight (kDa)

7.74

Isoelectric Point (pI)

57.73

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0016046)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G58570
fragaria_vesca FvH4_3g39160
malus_domestica MD11G1066400.v1.1
prunus_persica Prupe.6G052800_v2.0.a1
pyrus_communis pycom03g05050 pycom11g05620 pycom11g05630
rosa_chinensis RchiOBHm_Chr5g0070601
rosa_laevigata RLG00000036141
rosa_roxburghii Rroxscaffold_1G00010640
rosa_rugosa Rorug05G0407000
rosa_samantha Rh5BG480500 Rh5CG504800 Rh5DG492700
rosa_wichuraiana Rw5G043060

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 85
Acc36I ACCTGC 1 cut(s) 85
AccI GTMKAC 1 cut(s) 370
AcsI RAATTY 1 cut(s) 53
AfaI GTAC 1 cut(s) 327
AluBI AGCT 3 cut(s) 11, 224, 335
AluI AGCT 3 cut(s) 11, 224, 335
Alw21I GWGCWC 1 cut(s) 207
Alw26I GTCTC 1 cut(s) 193
AlwNI CAGNNNCTG 1 cut(s) 77
AoxI GGCC 1 cut(s) 345
ApeKI GCWGC 4 cut(s) 29, 32, 35, 38
ApoI RAATTY 1 cut(s) 53
AspS9I GGNCC 1 cut(s) 345
AsuHPI GGTGA 1 cut(s) 301
AsuII TTCGAA 1 cut(s) 251
Bbv12I GWGCWC 1 cut(s) 207
BbvI GCAGC 4 cut(s) 41, 44, 47, 50
BccI CCATC 2 cut(s) 54, 95
BceAI ACGGC 2 cut(s) 33, 185
BciVI GTATCC 1 cut(s) 224
BcoDI GTCTC 1 cut(s) 193
BfaI CTAG 1 cut(s) 225
BfuAI ACCTGC 1 cut(s) 85
BfuI GTATCC 1 cut(s) 224
BisI GCNGC 4 cut(s) 30, 33, 36, 39
BlsI GCNGC 4 cut(s) 31, 34, 37, 40
BmgT120I GGNCC 1 cut(s) 345
BmiI GGNNCC 1 cut(s) 87
Bpu14I TTCGAA 1 cut(s) 251
BsaJI CCNNGG 1 cut(s) 81
Bse1I ACTGG 1 cut(s) 348
BseDI CCNNGG 1 cut(s) 81
BseGI GGATG 1 cut(s) 124
BseMII CTCAG 1 cut(s) 332
BseNI ACTGG 1 cut(s) 348
BseRI GAGGAG 2 cut(s) 251, 324
BseXI GCAGC 4 cut(s) 41, 44, 47, 50
BshFI GGCC 1 cut(s) 347
BsiHKAI GWGCWC 1 cut(s) 207
BsiSI CCGG 1 cut(s) 217
BsmAI GTCTC 1 cut(s) 193
BsmBI CGTCTC 1 cut(s) 193
BsnI GGCC 1 cut(s) 347
Bsp119I TTCGAA 1 cut(s) 251
Bsp1286I GDGCHC 1 cut(s) 207
Bsp143I GATC 1 cut(s) 147
Bsp19I CCATGG 1 cut(s) 81
BspANI GGCC 1 cut(s) 347
BspCNI CTCAG 1 cut(s) 333
BspHI TCATGA 1 cut(s) 376
BspLI GGNNCC 1 cut(s) 87
BspMI ACCTGC 1 cut(s) 85
BspT104I TTCGAA 1 cut(s) 251
BsrI ACTGG 1 cut(s) 348
BssECI CCNNGG 1 cut(s) 81
BssMI GATC 1 cut(s) 147
BssT1I CCWWGG 1 cut(s) 81
Bst4CI ACNGT 1 cut(s) 269
Bst6I CTCTTC 2 cut(s) 179, 293
BstBI TTCGAA 1 cut(s) 251
BstC8I GCNNGC 1 cut(s) 222
BstDEI CTNAG 1 cut(s) 341
BstDSI CCRYGG 1 cut(s) 81
BstF5I GGATG 1 cut(s) 124
BstKTI GATC 1 cut(s) 150
BstMAI GTCTC 1 cut(s) 193
BstMBI GATC 1 cut(s) 147
BstMWI GCNNNNNNNGC 4 cut(s) 17, 26, 35, 38
BstV1I GCAGC 4 cut(s) 41, 44, 47, 50
BsuI GTATCC 1 cut(s) 224
BsuRI GGCC 1 cut(s) 347
BtgI CCRYGG 1 cut(s) 81
BtgZI GCGATG 1 cut(s) 163
BtsCI GGATG 1 cut(s) 124
BtsIMutI CAGTG 1 cut(s) 338
BveI ACCTGC 1 cut(s) 85
Cac8I GCNNGC 1 cut(s) 222
CaiI CAGNNNCTG 1 cut(s) 77
CciI TCATGA 1 cut(s) 376
Cfr13I GGNCC 1 cut(s) 345
Csp6I GTAC 1 cut(s) 326
CviAII CATG 6 cut(s) 24, 64, 82, 140, 151, 377
CviJI RGCY 6 cut(s) 11, 62, 86, 224, 335, 347
CviKI_1 RGCY 6 cut(s) 11, 62, 86, 224, 335, 347
CviQI GTAC 1 cut(s) 326
DdeI CTNAG 1 cut(s) 341
DpnI GATC 1 cut(s) 149
DpnII GATC 1 cut(s) 147
Eam1104I CTCTTC 2 cut(s) 179, 293
EarI CTCTTC 2 cut(s) 179, 293
Eco130I CCWWGG 1 cut(s) 81
EcoT14I CCWWGG 1 cut(s) 81
ErhI CCWWGG 1 cut(s) 81
Esp3I CGTCTC 1 cut(s) 193
FaeI CATG 6 cut(s) 27, 67, 85, 143, 154, 380
FaiI YATR 8 cut(s) 25, 65, 83, 132, 141, 152, 280, 378
FatI CATG 6 cut(s) 23, 63, 81, 139, 150, 376
FblI GTMKAC 1 cut(s) 370
Fnu4HI GCNGC 4 cut(s) 30, 33, 36, 39
FokI GGATG 1 cut(s) 131
Fsp4HI GCNGC 4 cut(s) 30, 33, 36, 39
FspBI CTAG 1 cut(s) 225
GluI GCNGC 4 cut(s) 30, 33, 36, 39
HaeIII GGCC 1 cut(s) 347
HapII CCGG 1 cut(s) 217
Hin1II CATG 6 cut(s) 27, 67, 85, 143, 154, 380
HinfI GANTC 1 cut(s) 106
HpaII CCGG 1 cut(s) 217
HphI GGTGA 1 cut(s) 301
Hpy166II GTNNAC 1 cut(s) 371
Hpy188III TCNNGA 2 cut(s) 98, 377
Hpy8I GTNNAC 1 cut(s) 371
HpyCH4III ACNGT 1 cut(s) 269
HpyCH4V TGCA 3 cut(s) 139, 264, 282
HpyF10VI GCNNNNNNNGC 4 cut(s) 17, 26, 35, 38
HpyF3I CTNAG 1 cut(s) 341
Hsp92II CATG 6 cut(s) 27, 67, 85, 143, 154, 380
Kzo9I GATC 1 cut(s) 147
LmnI GCTCC 2 cut(s) 91, 340
LpnPI CCDG 8 cut(s) 72, 90, 205, 230, 272, 342, 361, 375
Lsp1109I GCAGC 4 cut(s) 41, 44, 47, 50
MaeI CTAG 1 cut(s) 225
MalI GATC 1 cut(s) 149
MboI GATC 1 cut(s) 147
MboII GAAGA 4 cut(s) 166, 265, 307, 310
MhlI GDGCHC 1 cut(s) 207
MluCI AATT 1 cut(s) 53
MmeI TCCRAC 1 cut(s) 96
MnlI CCTC 8 cut(s) 229, 232, 285, 294, 302, 310, 336, 384
MslI CAYNNNNRTG 1 cut(s) 155
MspI CCGG 1 cut(s) 217
MwoI GCNNNNNNNGC 4 cut(s) 17, 26, 35, 38
NcoI CCATGG 1 cut(s) 81
NdeII GATC 1 cut(s) 147
NlaIII CATG 6 cut(s) 27, 67, 85, 143, 154, 380
NlaIV GGNNCC 1 cut(s) 87
NspV TTCGAA 1 cut(s) 251
PagI TCATGA 1 cut(s) 376
PaqCI CACCTGC 1 cut(s) 85
PcsI WCGNNNNNNNCGW 1 cut(s) 217
PfeI GAWTC 1 cut(s) 106
PkrI GCNGC 4 cut(s) 31, 34, 37, 40
PspN4I GGNNCC 1 cut(s) 87
PspPI GGNCC 1 cut(s) 345
PstNI CAGNNNCTG 1 cut(s) 77
RsaI GTAC 1 cut(s) 327
RsaNI GTAC 1 cut(s) 326
RseI CAYNNNNRTG 1 cut(s) 155
SatI GCNGC 4 cut(s) 30, 33, 36, 39
Sau3AI GATC 1 cut(s) 147
Sau96I GGNCC 1 cut(s) 345
SduI GDGCHC 1 cut(s) 207
SetI ASST 6 cut(s) 13, 79, 226, 261, 337, 376
SfuI TTCGAA 1 cut(s) 251
SmiMI CAYNNNNRTG 1 cut(s) 155
Sse9I AATT 1 cut(s) 53
SspMI CTAG 1 cut(s) 225
StyI CCWWGG 1 cut(s) 81
TaaI ACNGT 1 cut(s) 269
TaqI TCGA 2 cut(s) 234, 251
TasI AATT 1 cut(s) 53
TfiI GAWTC 1 cut(s) 106
TscAI CASTG 1 cut(s) 345
TseI GCWGC 4 cut(s) 29, 32, 35, 38
TspDTI ATGAA 1 cut(s) 166
TspRI CASTG 1 cut(s) 345
XapI RAATTY 1 cut(s) 53
XmiI GTMKAC 1 cut(s) 370
XspI CTAG 1 cut(s) 225
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.