RchiOBHm_Chr5g0070601

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
5
OG0016046
Physical Location & Seq
Forward (+)
76365685 .. 76366248
564 bp
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UTR
Exon/CDS
Intron
PRQ34579

Sequence Viewer

Length: 393 bp
ATGATATTAGCTCTAACGGCAACATGGGCAGCAGCAGCAGCAGCACCTCATCACAAATTTCCAGCCATGTCATCAGCACCTGCCATGGCTCCTAATAATCAAGATGAGATTCTGTTCTCGGATGATAAGCACTATGCTTTGCATGGAGAGATCATGTTGGTGGTGCTTATTGTTCTCTTCATCGCTTTCGTCTCCTGCCTTGCCGTGGTCACTCGTATCCGACGAGCTGGGGCAGTCGAGGAGGACTTGGTTTCGAAGAACCTGTGCAACTGTTACGGATTGCTAGGCAGTTTGGTGAGGAAGAAGAGGAACAGAGGAGATGAGGATGCTGCACCAGAATCTCCACTGAGGGCTAGTAATGAGATACCAGAAAGTCTACCTCATGAGAAGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

130

Amino Acids

14.12

Weight (kDa)

6.18

Isoelectric Point (pI)

62.69

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0016046)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G58570
fragaria_vesca FvH4_3g39160
malus_domestica MD11G1066400.v1.1
prunus_persica Prupe.6G052800_v2.0.a1
pyrus_communis pycom03g05050 pycom11g05620 pycom11g05630
rosa_chinensis RchiOBHm_Chr5g0070601
rosa_laevigata RLG00000036141
rosa_roxburghii Rroxscaffold_1G00010640
rosa_rugosa Rorug05G0407000
rosa_samantha Rh5BG480500 Rh5CG504800 Rh5DG492700
rosa_wichuraiana Rw5G043060

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 88
Acc36I ACCTGC 1 cut(s) 88
AccI GTMKAC 1 cut(s) 376
AcsI RAATTY 1 cut(s) 56
AfiI CCNNNNNNNGG 1 cut(s) 205
AluBI AGCT 2 cut(s) 11, 227
AluI AGCT 2 cut(s) 11, 227
Alw26I GTCTC 1 cut(s) 196
AlwNI CAGNNNCTG 1 cut(s) 80
ApeKI GCWGC 6 cut(s) 29, 32, 35, 38, 41, 329
ApoI RAATTY 1 cut(s) 56
AsuHPI GGTGA 1 cut(s) 307
AsuII TTCGAA 1 cut(s) 254
BbvI GCAGC 6 cut(s) 41, 44, 47, 50, 53, 316
BceAI ACGGC 2 cut(s) 33, 188
BciVI GTATCC 1 cut(s) 227
BcoDI GTCTC 1 cut(s) 196
BfaI CTAG 2 cut(s) 284, 354
BfuAI ACCTGC 1 cut(s) 88
BfuI GTATCC 1 cut(s) 227
BisI GCNGC 6 cut(s) 30, 33, 36, 39, 42, 330
BlsI GCNGC 6 cut(s) 31, 34, 37, 40, 43, 331
BmiI GGNNCC 1 cut(s) 90
BmsI GCATC 1 cut(s) 316
Bpu14I TTCGAA 1 cut(s) 254
BsaJI CCNNGG 2 cut(s) 84, 204
Bsc4I CCNNNNNNNGG 1 cut(s) 205
BseDI CCNNGG 2 cut(s) 84, 204
BseGI GGATG 2 cut(s) 127, 331
BseLI CCNNNNNNNGG 1 cut(s) 205
BseMII CTCAG 1 cut(s) 338
BseRI GAGGAG 2 cut(s) 254, 330
BseXI GCAGC 6 cut(s) 41, 44, 47, 50, 53, 316
BseYI CCCAGC 1 cut(s) 227
BsgI GTGCAG 1 cut(s) 315
BslI CCNNNNNNNGG 1 cut(s) 205
BsmAI GTCTC 1 cut(s) 196
BsmBI CGTCTC 1 cut(s) 196
Bsp119I TTCGAA 1 cut(s) 254
Bsp143I GATC 1 cut(s) 150
Bsp19I CCATGG 1 cut(s) 84
BspCNI CTCAG 1 cut(s) 339
BspHI TCATGA 1 cut(s) 382
BspLI GGNNCC 1 cut(s) 90
BspMI ACCTGC 1 cut(s) 88
BspT104I TTCGAA 1 cut(s) 254
BssECI CCNNGG 2 cut(s) 84, 204
BssMI GATC 1 cut(s) 150
BssT1I CCWWGG 1 cut(s) 84
Bst4CI ACNGT 1 cut(s) 272
Bst6I CTCTTC 2 cut(s) 182, 299
BstBI TTCGAA 1 cut(s) 254
BstDEI CTNAG 1 cut(s) 347
BstDSI CCRYGG 2 cut(s) 84, 204
BstF5I GGATG 2 cut(s) 127, 331
BstKTI GATC 1 cut(s) 153
BstMAI GTCTC 1 cut(s) 196
BstMBI GATC 1 cut(s) 150
BstMWI GCNNNNNNNGC 5 cut(s) 17, 26, 35, 38, 41
BstV1I GCAGC 6 cut(s) 41, 44, 47, 50, 53, 316
BsuI GTATCC 1 cut(s) 227
BtgI CCRYGG 2 cut(s) 84, 204
BtgZI GCGATG 1 cut(s) 166
BtsCI GGATG 2 cut(s) 127, 331
BtsIMutI CAGTG 1 cut(s) 344
BveI ACCTGC 1 cut(s) 88
CaiI CAGNNNCTG 1 cut(s) 80
CciI TCATGA 1 cut(s) 382
CviAII CATG 6 cut(s) 24, 67, 85, 143, 154, 383
CviJI RGCY 5 cut(s) 11, 65, 89, 227, 353
CviKI_1 RGCY 5 cut(s) 11, 65, 89, 227, 353
DdeI CTNAG 1 cut(s) 347
DpnI GATC 1 cut(s) 152
DpnII GATC 1 cut(s) 150
Eam1104I CTCTTC 2 cut(s) 182, 299
EarI CTCTTC 2 cut(s) 182, 299
Eco130I CCWWGG 1 cut(s) 84
EcoT14I CCWWGG 1 cut(s) 84
ErhI CCWWGG 1 cut(s) 84
Esp3I CGTCTC 1 cut(s) 196
FaeI CATG 6 cut(s) 27, 70, 88, 146, 157, 386
FaiI YATR 7 cut(s) 25, 68, 86, 135, 144, 155, 384
FatI CATG 6 cut(s) 23, 66, 84, 142, 153, 382
FblI GTMKAC 1 cut(s) 376
Fnu4HI GCNGC 6 cut(s) 30, 33, 36, 39, 42, 330
FokI GGATG 2 cut(s) 134, 338
Fsp4HI GCNGC 6 cut(s) 30, 33, 36, 39, 42, 330
FspBI CTAG 2 cut(s) 284, 354
GluI GCNGC 6 cut(s) 30, 33, 36, 39, 42, 330
GsaI CCCAGC 1 cut(s) 231
Hin1II CATG 6 cut(s) 27, 70, 88, 146, 157, 386
HinfI GANTC 2 cut(s) 109, 338
HphI GGTGA 1 cut(s) 307
Hpy166II GTNNAC 1 cut(s) 377
Hpy188I TCNGA 2 cut(s) 121, 221
Hpy188III TCNNGA 2 cut(s) 101, 383
Hpy8I GTNNAC 1 cut(s) 377
Hpy99I CGWCG 1 cut(s) 225
HpyCH4III ACNGT 1 cut(s) 272
HpyCH4V TGCA 3 cut(s) 142, 267, 332
HpyF10VI GCNNNNNNNGC 5 cut(s) 17, 26, 35, 38, 41
HpyF3I CTNAG 1 cut(s) 347
Hsp92II CATG 6 cut(s) 27, 70, 88, 146, 157, 386
Kzo9I GATC 1 cut(s) 150
LmnI GCTCC 1 cut(s) 94
LpnPI CCDG 7 cut(s) 75, 93, 208, 213, 275, 348, 381
Lsp1109I GCAGC 6 cut(s) 41, 44, 47, 50, 53, 316
LweI GCATC 1 cut(s) 316
MaeI CTAG 2 cut(s) 284, 354
MaeIII GTNAC 2 cut(s) 208, 272
MalI GATC 1 cut(s) 152
MboI GATC 1 cut(s) 150
MboII GAAGA 4 cut(s) 169, 268, 313, 316
MluCI AATT 1 cut(s) 56
MmeI TCCRAC 1 cut(s) 244
MnlI CCTC 9 cut(s) 57, 232, 235, 291, 300, 308, 316, 342, 390
MslI CAYNNNNRTG 1 cut(s) 158
MwoI GCNNNNNNNGC 5 cut(s) 17, 26, 35, 38, 41
NcoI CCATGG 1 cut(s) 84
NdeII GATC 1 cut(s) 150
NlaIII CATG 6 cut(s) 27, 70, 88, 146, 157, 386
NlaIV GGNNCC 1 cut(s) 90
NmuCI GTSAC 1 cut(s) 208
NspV TTCGAA 1 cut(s) 254
PagI TCATGA 1 cut(s) 382
PaqCI CACCTGC 1 cut(s) 88
PcsI WCGNNNNNNNCGW 1 cut(s) 220
PfeI GAWTC 2 cut(s) 109, 338
PkrI GCNGC 6 cut(s) 31, 34, 37, 40, 43, 331
PspFI CCCAGC 1 cut(s) 227
PspN4I GGNNCC 1 cut(s) 90
PstNI CAGNNNCTG 1 cut(s) 80
RseI CAYNNNNRTG 1 cut(s) 158
SatI GCNGC 6 cut(s) 30, 33, 36, 39, 42, 330
Sau3AI GATC 1 cut(s) 150
SetI ASST 6 cut(s) 13, 49, 82, 229, 264, 382
SfaNI GCATC 1 cut(s) 316
SfuI TTCGAA 1 cut(s) 254
SmiMI CAYNNNNRTG 1 cut(s) 158
Sse9I AATT 1 cut(s) 56
SspMI CTAG 2 cut(s) 284, 354
StyI CCWWGG 1 cut(s) 84
TaaI ACNGT 1 cut(s) 272
TaqI TCGA 2 cut(s) 237, 254
TasI AATT 1 cut(s) 56
TfiI GAWTC 2 cut(s) 109, 338
TscAI CASTG 1 cut(s) 351
TseFI GTSAC 1 cut(s) 208
TseI GCWGC 6 cut(s) 29, 32, 35, 38, 41, 329
Tsp45I GTSAC 1 cut(s) 208
TspDTI ATGAA 1 cut(s) 169
TspGWI ACGGA 1 cut(s) 291
TspRI CASTG 1 cut(s) 351
XapI RAATTY 1 cut(s) 56
XmiI GTMKAC 1 cut(s) 376
XspI CTAG 2 cut(s) 284, 354
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.