Rorug05G0407000

SAGA-associated factor 11

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000005
OG0007301
Physical Location & Seq
Reverse (-)
56084969 .. 56087494
2526 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug05G0407000.1

Sequence Viewer

Length: 750 bp
ATGATTTTGTTTTTTAATTTCACCAGAATGAACAGTGAAAGTACTACTCCTTCAACGGGCCAATCCAGCCTTTGGAAAGCTACGTTTAATACAACTAGTGTGTTTTTAGGGATAGGCATTATTACTCTACCGTACGCACTCTCCAGAGGAGGGTGGGTATCGCTCCTTCTTTGCATTGTCATCGCCATGATGACATGCTATACTGGCATGCTACTAAAAGCATGCATGGATGCGAACCCATCATTAACCACGTACTTCGATATTGTCGAACGAGCGTTTGGCAATAAATGGAGGATTATAGCTTCCGTGTTTTTAAACACGGAACTATACTTAGTCGCTCTCAGCTTGATGATAGTCGAAAGTGAAAATTTACACAAATTATTCCCCACGTTTGCCATTAAGCATGGCGGCGGGGCAACAATAATTAGCGGTAGAAAGACTTTCGTCTTAATTACCGCTTGCATTACTTTACCGACAATGCTACTCACGGATTTGAGCATATTGTCGTATGTGTCGGTCATGGGAGTTCTTTCTTCTCTCCTTATCGTGGGATCGCTCATATCCGTCGGAATATCAAAAGTTGGCTTTCACGCACAAGGGGGTCAACTGTGGAACATGAGTGGAATCCCAACCGCTATGAGTTTCTACATTTTCTGCTTCGCGGGCCACCCGGTTCTACCTTCCATTTATGTGTCTATGAGACATCGACAACAGTTCATTACGGTAATCTCGCTAGGTGTTGATGATTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Sgf11

Protein Analysis

249

Amino Acids

27.21

Weight (kDa)

8.85

Isoelectric Point (pI)

36.37

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Aa_trans PF01490 21 - 240 7.6e-35 Transmembrane amino acid transporter protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 72
AccII CGCG 1 cut(s) 662
AciI CCGC 6 cut(s) 408, 411, 429, 456, 633, 662
AclWI GGATC 1 cut(s) 559
AcsI RAATTY 1 cut(s) 367
AfaI GTAC 3 cut(s) 43, 134, 254
AfiI CCNNNNNNNGG 4 cut(s) 56, 72, 150, 547
AgsI TTSAA 1 cut(s) 54
AhlI ACTAGT 1 cut(s) 95
AjuI GAANNNNNNNTTGG 2 cut(s) 261, 293
AluBI AGCT 3 cut(s) 80, 302, 345
AluI AGCT 3 cut(s) 80, 302, 345
Alw26I GTCTC 1 cut(s) 694
AlwI GGATC 1 cut(s) 559
AoxI GGCC 2 cut(s) 58, 664
ApoI RAATTY 1 cut(s) 367
AspS9I GGNCC 2 cut(s) 58, 664
AsuC2I CCSGG 1 cut(s) 671
AsuHPI GGTGA 1 cut(s) 13
BarI GAAGNNNNNNTAC 4 cut(s) 34, 66, 150, 182
BccI CCATC 1 cut(s) 247
BcgI CGANNNNNNTGC 2 cut(s) 163, 197
BcnI CCSGG 1 cut(s) 671
BcoDI GTCTC 1 cut(s) 694
BcuI ACTAGT 1 cut(s) 95
BfaI CTAG 2 cut(s) 96, 734
BisI GCNGC 1 cut(s) 409
BlsI GCNGC 1 cut(s) 410
BmcAI AGTACT 1 cut(s) 43
Bme1390I CCNGG 1 cut(s) 671
BmgT120I GGNCC 2 cut(s) 58, 664
BmrFI CCNGG 1 cut(s) 671
BmsI GCATC 1 cut(s) 220
BoxI GACNNNNGTC 1 cut(s) 443
BpmI CTGGAG 1 cut(s) 127
BpuMI CCSGG 1 cut(s) 671
BsaAI YACGTR 1 cut(s) 252
BsaXI ACNNNNNCTCC 4 cut(s) 125, 141, 155, 171
Bsc4I CCNNNNNNNGG 4 cut(s) 56, 72, 150, 547
Bse1I ACTGG 1 cut(s) 208
BseGI GGATG 1 cut(s) 235
BseLI CCNNNNNNNGG 4 cut(s) 56, 72, 150, 547
BseMII CTCAG 1 cut(s) 355
BseNI ACTGG 1 cut(s) 208
BseRI GAGGAG 1 cut(s) 162
Bsh1236I CGCG 1 cut(s) 662
BshFI GGCC 2 cut(s) 60, 666
BsiSI CCGG 1 cut(s) 671
BsiWI CGTACG 1 cut(s) 132
BslI CCNNNNNNNGG 4 cut(s) 56, 72, 150, 547
BsmAI GTCTC 1 cut(s) 694
BsnI GGCC 2 cut(s) 60, 666
Bsp143I GATC 1 cut(s) 551
BspACI CCGC 6 cut(s) 408, 411, 429, 456, 633, 662
BspANI GGCC 2 cut(s) 60, 666
BspCNI CTCAG 1 cut(s) 354
BspFNI CGCG 1 cut(s) 662
BspPI GGATC 1 cut(s) 559
BsrI ACTGG 1 cut(s) 208
BssMI GATC 1 cut(s) 551
Bst4CI ACNGT 5 cut(s) 35, 132, 609, 714, 724
BstBAI YACGTR 1 cut(s) 252
BstC8I GCNNGC 4 cut(s) 209, 223, 460, 664
BstDEI CTNAG 2 cut(s) 331, 341
BstF5I GGATG 1 cut(s) 235
BstFNI CGCG 1 cut(s) 662
BstKTI GATC 1 cut(s) 554
BstMAI GTCTC 1 cut(s) 694
BstMBI GATC 1 cut(s) 551
BstMWI GCNNNNNNNGC 3 cut(s) 66, 204, 663
BstNSI RCATGY 3 cut(s) 198, 211, 225
BstPAI GACNNNNGTC 1 cut(s) 443
BstSCI CCNGG 1 cut(s) 669
BstUI CGCG 1 cut(s) 662
BsuRI GGCC 2 cut(s) 60, 666
BtgZI GCGATG 1 cut(s) 166
BtsCI GGATG 1 cut(s) 235
BtsIMutI CAGTG 1 cut(s) 40
Cac8I GCNNGC 4 cut(s) 209, 223, 460, 664
Cfr13I GGNCC 2 cut(s) 58, 664
Csp6I GTAC 3 cut(s) 42, 133, 253
CviAII CATG 8 cut(s) 187, 195, 208, 222, 226, 404, 520, 616
CviJI RGCY 7 cut(s) 60, 69, 80, 302, 345, 585, 666
CviKI_1 RGCY 7 cut(s) 60, 69, 80, 302, 345, 585, 666
CviQI GTAC 3 cut(s) 42, 133, 253
DdeI CTNAG 2 cut(s) 331, 341
DpnI GATC 1 cut(s) 553
DpnII GATC 1 cut(s) 551
DraI TTTAAA 1 cut(s) 315
EcoT22I ATGCAT 1 cut(s) 227
FaeI CATG 8 cut(s) 190, 198, 211, 225, 229, 407, 523, 619
FatI CATG 8 cut(s) 186, 194, 207, 221, 225, 403, 519, 615
FauI CCCGC 2 cut(s) 404, 655
Fnu4HI GCNGC 1 cut(s) 409
FokI GGATG 1 cut(s) 242
Fsp4HI GCNGC 1 cut(s) 409
FspBI CTAG 2 cut(s) 96, 734
GluI GCNGC 1 cut(s) 409
GsuI CTGGAG 1 cut(s) 127
HaeIII GGCC 2 cut(s) 60, 666
HapII CCGG 1 cut(s) 671
Hin1II CATG 8 cut(s) 190, 198, 211, 225, 229, 407, 523, 619
HincII GTYRAC 1 cut(s) 605
HindII GTYRAC 1 cut(s) 605
HinfI GANTC 1 cut(s) 624
HpaII CCGG 1 cut(s) 671
HphI GGTGA 1 cut(s) 13
Hpy166II GTNNAC 1 cut(s) 605
Hpy188I TCNGA 1 cut(s) 569
Hpy188III TCNNGA 1 cut(s) 144
Hpy8I GTNNAC 1 cut(s) 605
Hpy99I CGWCG 1 cut(s) 569
HpyAV CCTTC 3 cut(s) 60, 176, 690
HpyCH4III ACNGT 5 cut(s) 35, 132, 609, 714, 724
HpyCH4IV ACGT 3 cut(s) 83, 251, 389
HpyCH4V TGCA 3 cut(s) 174, 225, 462
HpyF10VI GCNNNNNNNGC 3 cut(s) 66, 204, 663
HpyF3I CTNAG 2 cut(s) 331, 341
HpySE526I ACGT 3 cut(s) 83, 251, 389
Hsp92II CATG 8 cut(s) 190, 198, 211, 225, 229, 407, 523, 619
Kzo9I GATC 1 cut(s) 551
LmnI GCTCC 1 cut(s) 168
LpnPI CCDG 5 cut(s) 37, 79, 157, 189, 684
LweI GCATC 1 cut(s) 220
MaeI CTAG 2 cut(s) 96, 734
MaeII ACGT 3 cut(s) 83, 251, 389
MalI GATC 1 cut(s) 553
MboI GATC 1 cut(s) 551
MboII GAAGA 1 cut(s) 525
MluCI AATT 5 cut(s) 16, 367, 377, 423, 450
MmeI TCCRAC 1 cut(s) 547
MnlI CCTC 3 cut(s) 140, 143, 285
Mph1103I ATGCAT 1 cut(s) 227
MseI TTAA 6 cut(s) 15, 87, 245, 314, 399, 449
MslI CAYNNNNRTG 3 cut(s) 26, 185, 689
MspI CCGG 1 cut(s) 671
MspR9I CCNGG 1 cut(s) 671
MvnI CGCG 1 cut(s) 662
MwoI GCNNNNNNNGC 3 cut(s) 66, 204, 663
NciI CCSGG 1 cut(s) 671
NdeII GATC 1 cut(s) 551
NlaIII CATG 8 cut(s) 190, 198, 211, 225, 229, 407, 523, 619
NsiI ATGCAT 1 cut(s) 227
NspI RCATGY 3 cut(s) 198, 211, 225
PaeI GCATGC 2 cut(s) 211, 225
PcsI WCGNNNNNNNCGW 1 cut(s) 264
PfeI GAWTC 1 cut(s) 624
Pfl23II CGTACG 1 cut(s) 132
PflMI CCANNNNNTGG 1 cut(s) 72
PkrI GCNGC 1 cut(s) 410
Ppu21I YACGTR 1 cut(s) 252
PshAI GACNNNNGTC 1 cut(s) 443
PspLI CGTACG 1 cut(s) 132
PspPI GGNCC 2 cut(s) 58, 664
RsaI GTAC 3 cut(s) 43, 134, 254
RsaNI GTAC 3 cut(s) 42, 133, 253
RseI CAYNNNNRTG 3 cut(s) 26, 185, 689
SaqAI TTAA 6 cut(s) 15, 87, 245, 314, 399, 449
SatI GCNGC 1 cut(s) 409
Sau3AI GATC 1 cut(s) 551
Sau96I GGNCC 2 cut(s) 58, 664
ScaI AGTACT 1 cut(s) 43
ScrFI CCNGG 1 cut(s) 671
SetI ASST 8 cut(s) 82, 86, 254, 304, 347, 392, 682, 739
SfaNI GCATC 1 cut(s) 220
SmiMI CAYNNNNRTG 3 cut(s) 26, 185, 689
SpeI ACTAGT 1 cut(s) 95
SphI GCATGC 2 cut(s) 211, 225
Sse9I AATT 5 cut(s) 16, 367, 377, 423, 450
SsiI CCGC 6 cut(s) 408, 411, 429, 456, 633, 662
SspMI CTAG 2 cut(s) 96, 734
StyD4I CCNGG 1 cut(s) 669
TaaI ACNGT 5 cut(s) 35, 132, 609, 714, 724
TaiI ACGT 3 cut(s) 86, 254, 392
TaqI TCGA 4 cut(s) 258, 267, 357, 706
TaqII GACCGA 1 cut(s) 505
TasI AATT 5 cut(s) 16, 367, 377, 423, 450
TatI WGTACW 1 cut(s) 41
TauI GCSGC 1 cut(s) 411
TfiI GAWTC 1 cut(s) 624
Tru1I TTAA 6 cut(s) 15, 87, 245, 314, 399, 449
Tru9I TTAA 6 cut(s) 15, 87, 245, 314, 399, 449
TscAI CASTG 1 cut(s) 40
TspDTI ATGAA 2 cut(s) 44, 706
TspGWI ACGGA 4 cut(s) 295, 335, 503, 553
TspRI CASTG 1 cut(s) 40
Van91I CCANNNNNTGG 1 cut(s) 72
XapI RAATTY 1 cut(s) 367
XceI RCATGY 3 cut(s) 198, 211, 225
XspI CTAG 2 cut(s) 96, 734
ZrmI AGTACT 1 cut(s) 43
Zsp2I ATGCAT 1 cut(s) 227
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.