SAGA-associated factor 11
Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.
| Species | Orthologous Gene IDs |
|---|---|
| arabidopsis_thaliana | AT5G58575 AT5G58575 |
| fragaria_vesca | FvH4_3g39150 FvH4_3g39150 |
| malus_domestica | MD03G1063100.v1.1 MD11G1066600.v1.1 MD11G1071300.v1.1 MD11G1152800.v1.1 |
| prunus_persica | Prupe.6G053100_v2.0.a1 Prupe.6G053100_v2.0.a1 Prupe.6G053100_v2.0.a1 |
| pyrus_communis | pycom11g05640 pycom11g05660 pycom11g05950 |
| rosa_chinensis | RchiOBHm_Chr5g0070551 |
| rosa_laevigata | RLG00000036140 |
| rosa_multiflora | Rmu_sc0002443.1_g000005 |
| rosa_roxburghii | Rroxscaffold_1G00010650 |
| rosa_rugosa | Rorug05G0406900 Rorug05G0407000 |
| rosa_samantha | Rh5AG462300 Rh5BG480400 Rh5CG504700 Rh5DG492400 |
| rosa_wichuraiana | Rw5G043050 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AclWI | GGATC | 2 cut(s) | 81, 201 |
| AfiI | CCNNNNNNNGG | 3 cut(s) | 17, 189, 190 |
| AgsI | TTSAA | 1 cut(s) | 152 |
| AluBI | AGCT | 1 cut(s) | 52 |
| AluI | AGCT | 1 cut(s) | 52 |
| AlwI | GGATC | 2 cut(s) | 81, 201 |
| AsuHPI | GGTGA | 1 cut(s) | 205 |
| BfaI | CTAG | 1 cut(s) | 211 |
| BlpI | GCTNAGC | 1 cut(s) | 48 |
| BmiI | GGNNCC | 1 cut(s) | 9 |
| BmsI | GCATC | 2 cut(s) | 34, 113 |
| Bpu1102I | GCTNAGC | 1 cut(s) | 48 |
| Bsa29I | ATCGAT | 1 cut(s) | 205 |
| Bsc4I | CCNNNNNNNGG | 3 cut(s) | 17, 189, 190 |
| BseCI | ATCGAT | 1 cut(s) | 205 |
| BseLI | CCNNNNNNNGG | 3 cut(s) | 17, 189, 190 |
| BseMII | CTCAG | 2 cut(s) | 62, 99 |
| BseRI | GAGGAG | 1 cut(s) | 68 |
| BshVI | ATCGAT | 1 cut(s) | 205 |
| BslI | CCNNNNNNNGG | 3 cut(s) | 17, 189, 190 |
| Bsp143I | GATC | 5 cut(s) | 73, 87, 139, 202, 206 |
| Bsp1720I | GCTNAGC | 1 cut(s) | 48 |
| BspCNI | CTCAG | 2 cut(s) | 61, 100 |
| BspDI | ATCGAT | 1 cut(s) | 205 |
| BspLI | GGNNCC | 1 cut(s) | 9 |
| BspPI | GGATC | 2 cut(s) | 81, 201 |
| BssMI | GATC | 5 cut(s) | 73, 87, 139, 202, 206 |
| Bst6I | CTCTTC | 2 cut(s) | 40, 150 |
| BstDEI | CTNAG | 3 cut(s) | 48, 108, 170 |
| BstKTI | GATC | 5 cut(s) | 76, 90, 142, 205, 209 |
| BstMBI | GATC | 5 cut(s) | 73, 87, 139, 202, 206 |
| BstX2I | RGATCY | 1 cut(s) | 73 |
| BstYI | RGATCY | 1 cut(s) | 73 |
| Bsu15I | ATCGAT | 1 cut(s) | 205 |
| BsuTUI | ATCGAT | 1 cut(s) | 205 |
| ClaI | ATCGAT | 1 cut(s) | 205 |
| CviAII | CATG | 1 cut(s) | 62 |
| CviJI | RGCY | 2 cut(s) | 52, 182 |
| CviKI_1 | RGCY | 2 cut(s) | 52, 182 |
| DdeI | CTNAG | 3 cut(s) | 48, 108, 170 |
| DpnI | GATC | 5 cut(s) | 75, 89, 141, 204, 208 |
| DpnII | GATC | 5 cut(s) | 73, 87, 139, 202, 206 |
| Eam1104I | CTCTTC | 2 cut(s) | 40, 150 |
| EarI | CTCTTC | 2 cut(s) | 40, 150 |
| FaeI | CATG | 1 cut(s) | 65 |
| FaiI | YATR | 2 cut(s) | 29, 63 |
| FatI | CATG | 1 cut(s) | 61 |
| FspBI | CTAG | 1 cut(s) | 211 |
| Hin1II | CATG | 1 cut(s) | 65 |
| HinfI | GANTC | 1 cut(s) | 83 |
| HphI | GGTGA | 1 cut(s) | 205 |
| Hpy188I | TCNGA | 2 cut(s) | 43, 109 |
| Hpy188III | TCNNGA | 1 cut(s) | 137 |
| HpyAV | CCTTC | 1 cut(s) | 11 |
| HpyCH4V | TGCA | 1 cut(s) | 104 |
| HpyF3I | CTNAG | 3 cut(s) | 48, 108, 170 |
| Hsp92II | CATG | 1 cut(s) | 65 |
| Kzo9I | GATC | 5 cut(s) | 73, 87, 139, 202, 206 |
| LweI | GCATC | 2 cut(s) | 34, 113 |
| MaeI | CTAG | 1 cut(s) | 211 |
| MalI | GATC | 5 cut(s) | 75, 89, 141, 204, 208 |
| MboI | GATC | 5 cut(s) | 73, 87, 139, 202, 206 |
| MboII | GAAGA | 6 cut(s) | 27, 30, 164, 167, 173, 176 |
| MflI | RGATCY | 1 cut(s) | 73 |
| MluCI | AATT | 1 cut(s) | 145 |
| MnlI | CCTC | 4 cut(s) | 43, 89, 151, 189 |
| MslI | CAYNNNNRTG | 1 cut(s) | 109 |
| MspA1I | CMGCKG | 1 cut(s) | 52 |
| NdeII | GATC | 5 cut(s) | 73, 87, 139, 202, 206 |
| NlaIII | CATG | 1 cut(s) | 65 |
| NlaIV | GGNNCC | 1 cut(s) | 9 |
| PfeI | GAWTC | 1 cut(s) | 83 |
| PspN4I | GGNNCC | 1 cut(s) | 9 |
| PsuI | RGATCY | 1 cut(s) | 73 |
| PvuII | CAGCTG | 1 cut(s) | 52 |
| RseI | CAYNNNNRTG | 1 cut(s) | 109 |
| Sau3AI | GATC | 5 cut(s) | 73, 87, 139, 202, 206 |
| SetI | ASST | 3 cut(s) | 54, 176, 200 |
| SfaNI | GCATC | 2 cut(s) | 34, 113 |
| SgeI | CNNG | 6 cut(s) | 74, 92, 149, 197, 201, 203 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 109 |
| Sse9I | AATT | 1 cut(s) | 145 |
| SspMI | CTAG | 1 cut(s) | 211 |
| TaqI | TCGA | 4 cut(s) | 81, 86, 118, 205 |
| TasI | AATT | 1 cut(s) | 145 |
| TfiI | GAWTC | 1 cut(s) | 83 |
| XspI | CTAG | 1 cut(s) | 211 |