Rw5G043050

SAGA-associated factor 11

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr5
OG0007301
Physical Location & Seq
Reverse (-)
75292927 .. 75294847
1921 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw5G043050.1

Sequence Viewer

Length: 540 bp
ATGTCGCTTCCTAATGAAGACAGTACGTCTTCAACTTCTGATGCACAGCTTAATAATATTTTTGGGGATCTACTCGATTCCATTATTGTTGATGTTGCATCTGAGTGTCACCGAATAGCAAAGTTGGGACTTGATCGTAATTTTGAAGAAGAGGAAGAAGAAATGAGGCTTTCAGCCCAAGCACGGGTAAGGGTTGCGGATCCTAGTAATAGTAGTGAAGCAAATGGCAAGTACCTGGTTGACATATTTGGACAGACTCATCCTCCTGTAGCCAATGAAATATTTGAGTGCATGAATTGTGGTCGAACTATCATGGCCGGAAGATTTGCTCCTCATTTGGAGAAGTGTATGGGAAAGGGTAGAAAGGCTCGTCTGAAGGTGACAAGAAGTAGCACGGCTGCACAGACTCGACATACACGAGGCAACCCTGGTTCCACATACTCCAATTATTCAAATTCCAACAGCACAAGCCGGCTACCAAATGGAACATCAAGTGCTGGAGGTGAGGAGTACTCGAATGGTGCACTGGAAGAGTCATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Sgf11

Protein Analysis

179

Amino Acids

19.42

Weight (kDa)

5.42

Isoelectric Point (pI)

49.57

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Sgf11 PF08209 92 - 122 1e-16 Sgf11 (transcriptional regulation protein)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 197
AclWI GGATC 3 cut(s) 75, 194, 207
AcoI YGGCCR 1 cut(s) 315
AcsI RAATTY 1 cut(s) 454
AcuI CTGAAG 1 cut(s) 395
AfaI GTAC 3 cut(s) 25, 233, 512
AfiI CCNNNNNNNGG 2 cut(s) 183, 184
AgsI TTSAA 3 cut(s) 33, 146, 453
AhdI GACNNNNNGTC 1 cut(s) 25
AjnI CCWGG 2 cut(s) 234, 427
AluBI AGCT 1 cut(s) 49
AluI AGCT 1 cut(s) 49
Alw21I GWGCWC 1 cut(s) 526
Alw44I GTGCAC 1 cut(s) 522
AlwI GGATC 3 cut(s) 75, 194, 207
AoxI GGCC 1 cut(s) 315
ApaLI GTGCAC 1 cut(s) 522
ApeKI GCWGC 1 cut(s) 398
ApoI RAATTY 1 cut(s) 454
AsuHPI GGTGA 3 cut(s) 101, 391, 515
BaeGI GKGCMC 1 cut(s) 526
BamHI GGATCC 1 cut(s) 199
BauI CACGAG 1 cut(s) 417
BbsI GAAGAC 2 cut(s) 21, 24
Bbv12I GWGCWC 1 cut(s) 526
BbvI GCAGC 1 cut(s) 385
BceAI ACGGC 1 cut(s) 411
BciT130I CCWGG 2 cut(s) 236, 429
BfaI CTAG 1 cut(s) 204
BfmI CTRYAG 1 cut(s) 267
BisI GCNGC 1 cut(s) 399
BlsI GCNGC 1 cut(s) 400
BmcAI AGTACT 1 cut(s) 512
Bme1390I CCNGG 2 cut(s) 236, 429
BmeRI GACNNNNNGTC 1 cut(s) 25
BmiI GGNNCC 2 cut(s) 201, 433
BmrFI CCNGG 2 cut(s) 236, 429
BmsI GCATC 2 cut(s) 31, 107
BpiI GAAGAC 2 cut(s) 21, 24
BplI GAGNNNNNCTC 2 cut(s) 497, 529
BpmI CTGGAG 1 cut(s) 519
BsaJI CCNNGG 1 cut(s) 427
BsaXI ACNNNNNCTCC 2 cut(s) 247, 277
Bsc4I CCNNNNNNNGG 2 cut(s) 183, 184
Bse118I RCCGGY 1 cut(s) 471
Bse1I ACTGG 1 cut(s) 531
BseBI CCWGG 2 cut(s) 236, 429
BseDI CCNNGG 1 cut(s) 427
BseGI GGATG 1 cut(s) 259
BseLI CCNNNNNNNGG 2 cut(s) 183, 184
BseMII CTCAG 1 cut(s) 93
BseNI ACTGG 1 cut(s) 531
BseRI GAGGAG 2 cut(s) 321, 521
BseSI GKGCMC 1 cut(s) 526
BseXI GCAGC 1 cut(s) 385
BsgI GTGCAG 1 cut(s) 384
BshFI GGCC 1 cut(s) 317
BsiHKAI GWGCWC 1 cut(s) 526
BsiSI CCGG 2 cut(s) 318, 472
BslFI GGGAC 1 cut(s) 141
BslI CCNNNNNNNGG 2 cut(s) 183, 184
BsmFI GGGAC 1 cut(s) 141
BsnI GGCC 1 cut(s) 317
Bsp1286I GDGCHC 1 cut(s) 526
Bsp143I GATC 3 cut(s) 67, 133, 199
BspACI CCGC 1 cut(s) 197
BspANI GGCC 1 cut(s) 317
BspCNI CTCAG 1 cut(s) 94
BspHI TCATGA 1 cut(s) 536
BspLI GGNNCC 2 cut(s) 201, 433
BspPI GGATC 3 cut(s) 75, 194, 207
BsrFI RCCGGY 1 cut(s) 471
BsrI ACTGG 1 cut(s) 531
BssAI RCCGGY 1 cut(s) 471
BssECI CCNNGG 1 cut(s) 427
BssMI GATC 3 cut(s) 67, 133, 199
BssSI CACGAG 1 cut(s) 417
Bst2BI CACGAG 1 cut(s) 417
Bst2UI CCWGG 2 cut(s) 236, 429
Bst4CI ACNGT 1 cut(s) 23
Bst6I CTCTTC 2 cut(s) 144, 525
BstC8I GCNNGC 1 cut(s) 473
BstDEI CTNAG 1 cut(s) 102
BstF5I GGATG 1 cut(s) 259
BstKTI GATC 3 cut(s) 70, 136, 202
BstMBI GATC 3 cut(s) 67, 133, 199
BstNI CCWGG 2 cut(s) 236, 429
BstSCI CCNGG 2 cut(s) 234, 427
BstSFI CTRYAG 1 cut(s) 267
BstSLI GKGCMC 1 cut(s) 526
BstV1I GCAGC 1 cut(s) 385
BstV2I GAAGAC 2 cut(s) 21, 24
BstX2I RGATCY 2 cut(s) 67, 199
BstYI RGATCY 2 cut(s) 67, 199
BsuRI GGCC 1 cut(s) 317
BtsCI GGATG 1 cut(s) 259
BtsIMutI CAGTG 1 cut(s) 524
Cac8I GCNNGC 1 cut(s) 473
CciI TCATGA 1 cut(s) 536
Cfr10I RCCGGY 1 cut(s) 471
CsiI ACCWGGT 1 cut(s) 234
Csp6I GTAC 3 cut(s) 24, 232, 511
CviAII CATG 3 cut(s) 292, 313, 537
CviJI RGCY 9 cut(s) 49, 169, 176, 272, 317, 368, 398, 471, 475
CviKI_1 RGCY 9 cut(s) 49, 169, 176, 272, 317, 368, 398, 471, 475
CviQI GTAC 3 cut(s) 24, 232, 511
DdeI CTNAG 1 cut(s) 102
DpnI GATC 3 cut(s) 69, 135, 201
DpnII GATC 3 cut(s) 67, 133, 199
DriI GACNNNNNGTC 1 cut(s) 25
EaeI YGGCCR 1 cut(s) 315
Eam1104I CTCTTC 2 cut(s) 144, 525
Eam1105I GACNNNNNGTC 1 cut(s) 25
EarI CTCTTC 2 cut(s) 144, 525
Eco57I CTGAAG 1 cut(s) 395
EcoRII CCWGG 2 cut(s) 234, 427
FaeI CATG 3 cut(s) 295, 316, 540
FaiI YATR 7 cut(s) 245, 293, 314, 350, 414, 439, 538
FaqI GGGAC 1 cut(s) 141
FatI CATG 3 cut(s) 291, 312, 536
Fnu4HI GCNGC 1 cut(s) 399
FokI GGATG 1 cut(s) 246
Fsp4HI GCNGC 1 cut(s) 399
FspBI CTAG 1 cut(s) 204
GluI GCNGC 1 cut(s) 399
GsuI CTGGAG 1 cut(s) 519
HaeIII GGCC 1 cut(s) 317
HapII CCGG 2 cut(s) 318, 472
Hin1II CATG 3 cut(s) 295, 316, 540
HincII GTYRAC 1 cut(s) 241
HindII GTYRAC 1 cut(s) 241
HinfI GANTC 4 cut(s) 77, 256, 406, 533
HpaII CCGG 2 cut(s) 318, 472
HphI GGTGA 3 cut(s) 101, 391, 515
Hpy166II GTNNAC 2 cut(s) 241, 524
Hpy188I TCNGA 3 cut(s) 40, 103, 375
Hpy188III TCNNGA 1 cut(s) 537
Hpy8I GTNNAC 2 cut(s) 241, 524
HpyAV CCTTC 1 cut(s) 370
HpyCH4III ACNGT 1 cut(s) 23
HpyCH4IV ACGT 1 cut(s) 26
HpyCH4V TGCA 5 cut(s) 44, 98, 291, 401, 524
HpyF3I CTNAG 1 cut(s) 102
HpySE526I ACGT 1 cut(s) 26
Hsp92II CATG 3 cut(s) 295, 316, 540
KroI GCCGGC 1 cut(s) 471
KroNI GCCGGC 1 cut(s) 473
Kzo9I GATC 3 cut(s) 67, 133, 199
LmnI GCTCC 1 cut(s) 334
LpnPI CCDG 9 cut(s) 221, 248, 279, 331, 414, 441, 483, 485, 512
Lsp1109I GCAGC 1 cut(s) 385
LweI GCATC 2 cut(s) 31, 107
MabI ACCWGGT 1 cut(s) 234
MaeI CTAG 1 cut(s) 204
MaeII ACGT 1 cut(s) 26
MaeIII GTNAC 2 cut(s) 107, 379
MalI GATC 3 cut(s) 69, 135, 201
MboI GATC 3 cut(s) 67, 133, 199
MboII GAAGA 7 cut(s) 21, 29, 158, 161, 167, 170, 333
MflI RGATCY 2 cut(s) 67, 199
MhlI GDGCHC 1 cut(s) 526
MluCI AATT 4 cut(s) 139, 295, 445, 454
MlyI GAGTC 2 cut(s) 250, 400
MmeI TCCRAC 1 cut(s) 483
MnlI CCTC 7 cut(s) 145, 159, 273, 342, 413, 494, 499
MroNI GCCGGC 1 cut(s) 471
MseI TTAA 1 cut(s) 51
MslI CAYNNNNRTG 1 cut(s) 103
MspI CCGG 2 cut(s) 318, 472
MspR9I CCNGG 2 cut(s) 236, 429
MvaI CCWGG 2 cut(s) 236, 429
NaeI GCCGGC 1 cut(s) 473
NdeII GATC 3 cut(s) 67, 133, 199
NgoMIV GCCGGC 1 cut(s) 471
NlaIII CATG 3 cut(s) 295, 316, 540
NlaIV GGNNCC 2 cut(s) 201, 433
NmuCI GTSAC 2 cut(s) 107, 379
PagI TCATGA 1 cut(s) 536
PcsI WCGNNNNNNNCGW 1 cut(s) 415
PdiI GCCGGC 1 cut(s) 473
PfeI GAWTC 1 cut(s) 77
PkrI GCNGC 1 cut(s) 400
PleI GAGTC 2 cut(s) 250, 400
PpsI GAGTC 2 cut(s) 250, 400
Psp6I CCWGG 2 cut(s) 234, 427
PspGI CCWGG 2 cut(s) 234, 427
PspN4I GGNNCC 2 cut(s) 201, 433
PsuI RGATCY 2 cut(s) 67, 199
RsaI GTAC 3 cut(s) 25, 233, 512
RsaNI GTAC 3 cut(s) 24, 232, 511
RseI CAYNNNNRTG 1 cut(s) 103
SaqAI TTAA 1 cut(s) 51
SatI GCNGC 1 cut(s) 399
Sau3AI GATC 3 cut(s) 67, 133, 199
ScaI AGTACT 1 cut(s) 512
SchI GAGTC 2 cut(s) 250, 400
ScrFI CCNGG 2 cut(s) 236, 429
SduI GDGCHC 1 cut(s) 526
SetI ASST 5 cut(s) 29, 51, 237, 381, 505
SexAI ACCWGGT 1 cut(s) 234
SfaNI GCATC 2 cut(s) 31, 107
SfcI CTRYAG 1 cut(s) 267
SmiMI CAYNNNNRTG 1 cut(s) 103
Sse9I AATT 4 cut(s) 139, 295, 445, 454
SsiI CCGC 1 cut(s) 197
SspI AATATT 2 cut(s) 58, 282
SspMI CTAG 1 cut(s) 204
StyD4I CCNGG 2 cut(s) 234, 427
TaaI ACNGT 1 cut(s) 23
TaiI ACGT 1 cut(s) 29
TaqI TCGA 4 cut(s) 75, 304, 409, 515
TasI AATT 4 cut(s) 139, 295, 445, 454
TatI WGTACW 1 cut(s) 510
TfiI GAWTC 1 cut(s) 77
Tru1I TTAA 1 cut(s) 51
Tru9I TTAA 1 cut(s) 51
TscAI CASTG 1 cut(s) 531
TseFI GTSAC 2 cut(s) 107, 379
TseI GCWGC 1 cut(s) 398
Tsp45I GTSAC 2 cut(s) 107, 379
TspDTI ATGAA 3 cut(s) 30, 291, 308
TspRI CASTG 1 cut(s) 531
VneI GTGCAC 1 cut(s) 522
XapI RAATTY 1 cut(s) 454
XspI CTAG 1 cut(s) 204
ZrmI AGTACT 1 cut(s) 512
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.