pycom11g05950

SAGA-associated factor 11

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr11
OG0007301
Physical Location & Seq
Reverse (-)
4579545 .. 4579899
355 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom11g05950.1

Sequence Viewer

Length: 249 bp
ATGAATTGCAGTCGGTCTATCATGGATGGGAGGTTTGCTCCTCATTTGGAGAATTGTATGGGAAAGGGTAGGAAGGCTCACCTTAAGGTGACAAGAAGTACCCCGGCTGCACATACTCATAATTCATGGGGAAACCCTGCTTCCACATACTCAAAATATTCAAGTTCCAACAGTATAAGCCAGTTATCAAATGGAGCATCGGGTGTTGCTGGTGAGGAGTACTCGAATGGTGCATTGGAAGAGCCATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Sgf11

Protein Analysis

83

Amino Acids

8.73

Weight (kDa)

8.71

Isoelectric Point (pI)

36.02

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Sgf11 PF08209 2 - 25 1.6e-11 Sgf11 (transcriptional regulation protein)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AfaI GTAC 2 cut(s) 100, 221
AflII CTTAAG 1 cut(s) 83
AgsI TTSAA 1 cut(s) 162
AjuI GAANNNNNNNTTGG 1 cut(s) 218
ApeKI GCWGC 1 cut(s) 107
AsuC2I CCSGG 1 cut(s) 104
AsuHPI GGTGA 3 cut(s) 71, 100, 224
BbvI GCAGC 1 cut(s) 94
BccI CCATC 1 cut(s) 20
BcnI CCSGG 1 cut(s) 104
BfrI CTTAAG 1 cut(s) 83
BisI GCNGC 1 cut(s) 108
BlsI GCNGC 1 cut(s) 109
BmcAI AGTACT 1 cut(s) 221
Bme1390I CCNGG 1 cut(s) 104
BmrFI CCNGG 1 cut(s) 104
BmsI GCATC 1 cut(s) 206
BplI GAGNNNNNCTC 4 cut(s) 22, 54, 206, 238
BpuMI CCSGG 1 cut(s) 104
BsaJI CCNNGG 1 cut(s) 102
Bse1I ACTGG 1 cut(s) 181
BseDI CCNNGG 1 cut(s) 102
BseGI GGATG 1 cut(s) 31
BseNI ACTGG 1 cut(s) 181
BseRI GAGGAG 2 cut(s) 30, 230
BseXI GCAGC 1 cut(s) 94
BsgI GTGCAG 1 cut(s) 93
BsiSI CCGG 1 cut(s) 104
BspQI GCTCTTC 1 cut(s) 234
BspTI CTTAAG 1 cut(s) 83
BsrI ACTGG 1 cut(s) 181
BssECI CCNNGG 1 cut(s) 102
Bst4CI ACNGT 1 cut(s) 173
Bst6I CTCTTC 1 cut(s) 234
BstAFI CTTAAG 1 cut(s) 83
BstF5I GGATG 1 cut(s) 31
BstSCI CCNGG 1 cut(s) 102
BstV1I GCAGC 1 cut(s) 94
BtsCI GGATG 1 cut(s) 31
Csp6I GTAC 2 cut(s) 99, 220
CviAII CATG 3 cut(s) 22, 126, 246
CviJI RGCY 4 cut(s) 77, 107, 180, 244
CviKI_1 RGCY 4 cut(s) 77, 107, 180, 244
CviQI GTAC 2 cut(s) 99, 220
Eam1104I CTCTTC 1 cut(s) 234
EarI CTCTTC 1 cut(s) 234
FaeI CATG 3 cut(s) 25, 129, 249
FaiI YATR 8 cut(s) 23, 59, 114, 120, 127, 148, 176, 247
FatI CATG 3 cut(s) 21, 125, 245
Fnu4HI GCNGC 1 cut(s) 108
FokI GGATG 1 cut(s) 38
Fsp4HI GCNGC 1 cut(s) 108
GluI GCNGC 1 cut(s) 108
HapII CCGG 1 cut(s) 104
Hin1II CATG 3 cut(s) 25, 129, 249
HpaII CCGG 1 cut(s) 104
HphI GGTGA 3 cut(s) 71, 100, 224
HpyAV CCTTC 1 cut(s) 67
HpyCH4III ACNGT 1 cut(s) 173
HpyCH4V TGCA 3 cut(s) 9, 110, 233
Hsp92II CATG 3 cut(s) 25, 129, 249
LguI GCTCTTC 1 cut(s) 234
LmnI GCTCC 2 cut(s) 43, 194
LpnPI CCDG 4 cut(s) 117, 150, 194, 195
Lsp1109I GCAGC 1 cut(s) 94
LweI GCATC 1 cut(s) 206
MaeIII GTNAC 1 cut(s) 88
MluCI AATT 3 cut(s) 4, 52, 121
MmeI TCCRAC 1 cut(s) 192
MnlI CCTC 3 cut(s) 24, 51, 208
MseI TTAA 1 cut(s) 84
MspCI CTTAAG 1 cut(s) 83
MspI CCGG 1 cut(s) 104
MspR9I CCNGG 1 cut(s) 104
NciI CCSGG 1 cut(s) 104
NlaIII CATG 3 cut(s) 25, 129, 249
NmuCI GTSAC 1 cut(s) 88
PciSI GCTCTTC 1 cut(s) 234
PkrI GCNGC 1 cut(s) 109
RsaI GTAC 2 cut(s) 100, 221
RsaNI GTAC 2 cut(s) 99, 220
SapI GCTCTTC 1 cut(s) 234
SaqAI TTAA 1 cut(s) 84
SatI GCNGC 1 cut(s) 108
ScaI AGTACT 1 cut(s) 221
ScrFI CCNGG 1 cut(s) 104
SetI ASST 3 cut(s) 35, 84, 90
SfaNI GCATC 1 cut(s) 206
SmlI CTYRAG 1 cut(s) 83
SmoI CTYRAG 1 cut(s) 83
Sse9I AATT 3 cut(s) 4, 52, 121
SspI AATATT 1 cut(s) 158
StyD4I CCNGG 1 cut(s) 102
TaaI ACNGT 1 cut(s) 173
TaqI TCGA 1 cut(s) 224
TasI AATT 3 cut(s) 4, 52, 121
TatI WGTACW 1 cut(s) 219
Tru1I TTAA 1 cut(s) 84
Tru9I TTAA 1 cut(s) 84
TseFI GTSAC 1 cut(s) 88
TseI GCWGC 1 cut(s) 107
Tsp45I GTSAC 1 cut(s) 88
TspDTI ATGAA 2 cut(s) 17, 114
Vha464I CTTAAG 1 cut(s) 83
XcmI CCANNNNNNNNNTGG 1 cut(s) 188
ZrmI AGTACT 1 cut(s) 221
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.